| http://purl.uniprot.org/unirules/MF_01698#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:621783 up:source unirule:MF_01698 .
_:621784 up:source unirule:MF_01698 .
_:621785 up:source unirule:MF_01698 .
_:621786 up:source unirule:MF_01698 .
_:621787 up:source unirule:MF_01698 .
_:621788 up:source unirule:MF_01698 .
_:621789 up:source unirule:MF_01698 .
_:621790 up:source unirule:MF_01698 .
_:621791 up:source unirule:MF_01698 .
_:621792 up:source unirule:MF_01698 .
_:621793 up:source unirule:MF_01698 .
_:621794 up:source unirule:MF_01698 .
_:621795 up:source unirule:MF_01698 .
_:621796 up:source unirule:MF_01698 .
_:621797 up:source unirule:MF_01698 .
_:621798 up:source unirule:MF_01698 .
_:621799 up:source unirule:MF_01698 .
_:621800 up:source unirule:MF_01698 .
_:621801 up:source unirule:MF_01698 .
_:621802 up:source unirule:MF_01698 .
_:621803 up:source unirule:MF_01698 .
_:621804 up:source unirule:MF_01698 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0010125 ,
GO:0035447 ,
keyword:12 ,
keyword:677 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.189' ;
up:fullName 'Mycothiol acetyltransferase' ;
up:shortName 'MSH acetyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Mycothiol synthase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mshD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the acetyltransferase family. MshD subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:57288 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:57288 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:57288 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:57288 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:57288 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:58887 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:58887 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:58887 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:58887 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:58887 .
_:621805 a rdf:Statement ;
up:attribution _:621783 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:621806 a rdf:Statement ;
up:attribution _:621784 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:621807 a rdf:Statement ;
up:attribution _:621785 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:621808 a rdf:Statement ;
up:attribution _:621786 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:621809 a rdf:Statement ;
up:attribution _:621787 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:621810 a rdf:Statement ;
up:attribution _:621788 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:621811 a rdf:Statement ;
up:attribution _:621789 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:621812 a rdf:Statement ;
up:attribution _:621790 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:621813 a rdf:Statement ;
up:attribution _:621791 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:621814 a rdf:Statement ;
up:attribution _:621792 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:621815 a rdf:Statement ;
up:attribution _:621793 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0035447 .
_:621816 a rdf:Statement ;
up:attribution _:621794 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010125 .
_:621817 a rdf:Statement ;
up:source unirule:MF_01698 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:621818 a rdf:Statement ;
up:attribution _:621795 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:621819 a rdf:Statement ;
up:source unirule:MF_01698 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:621820 a rdf:Statement ;
up:attribution _:621796 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:621821 a rdf:Statement ;
up:source unirule:MF_01698 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:621822 a rdf:Statement ;
up:attribution _:621797 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:621823 a rdf:Statement ;
up:source unirule:MF_01698 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:621824 a rdf:Statement ;
up:attribution _:621798 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:621825 a rdf:Statement ;
up:source unirule:MF_01698 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:621826 a rdf:Statement ;
up:attribution _:621799 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:621827 a rdf:Statement ;
up:source unirule:MF_01698 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:621828 a rdf:Statement ;
up:attribution _:621800 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:621829 a rdf:Statement ;
up:source unirule:MF_01698 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:621830 a rdf:Statement ;
up:attribution _:621801 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:621831 a rdf:Statement ;
up:source unirule:MF_01698 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:621832 a rdf:Statement ;
up:attribution _:621802 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:621833 a rdf:Statement ;
up:source unirule:MF_01698 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:621834 a rdf:Statement ;
up:attribution _:621803 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:621835 a rdf:Statement ;
up:source unirule:MF_01698 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:621836 a rdf:Statement ;
up:attribution _:621804 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01698
#Rule MF_01698 Created by:? on:2010-09-20 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01698 .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(URI(CONCAT(STR(?this), '#MF_01698a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionP9WJM783 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJM785 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJM7MF_0169878 .
?templateMotifSequenceMatchRegionP9WJM783 faldo:begin ?templateMotifSequenceMatchBeginP9WJM784 .
?templateMotifSequenceMatchBeginP9WJM784 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJM779 ;
faldo:reference isoform:P9WJM7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJM785 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0169889 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJM7MF_0169880 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0169888 .
?targetMotifMatchRegionMatchBeginMF_0169888 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169881 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0169889 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_0169878, 1, (STRLEN(?templateMotifCigarP9WJM7MF_0169878) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_0169878, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP9WJM779) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_0169880, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_0169880) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_0169880, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_0169880, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_0169880) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_0169880, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0169881) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_0169878, 1, (STRLEN(?templateMotifCigarP9WJM7MF_0169878) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_0169878, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP9WJM779) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_0169880, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_0169880) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_0169880, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_0169880, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_0169880) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_0169880, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0169881) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[LAIV][ARNDCQEGHILKMFPSTWYVBZJUOX][VADIT]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP9WJM7100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJM7102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJM7MF_0169895 .
?templateMotifSequenceMatchRegionP9WJM7100 faldo:begin ?templateMotifSequenceMatchBeginP9WJM7101 .
?templateMotifSequenceMatchBeginP9WJM7101 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJM796 ;
faldo:reference isoform:P9WJM7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJM7102 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01698106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJM7MF_0169897 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01698105 .
?targetMotifMatchRegionMatchBeginMF_01698105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0169898 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01698106 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_0169895, 1, (STRLEN(?templateMotifCigarP9WJM7MF_0169895) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_0169895, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP9WJM796) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_0169897, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_0169897) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_0169897, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_0169897, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_0169897) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_0169897, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0169898) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_0169895, 1, (STRLEN(?templateMotifCigarP9WJM7MF_0169895) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_0169895, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP9WJM796) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_0169897, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_0169897) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_0169897, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_0169897, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_0169897) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_0169897, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0169898) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[RHK][RQEHILN][GA][ARNDCQEGHILKMFPSTWYVBZJUOX][GAV][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP9WJM7117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJM7119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJM7MF_01698112 .
?templateMotifSequenceMatchRegionP9WJM7117 faldo:begin ?templateMotifSequenceMatchBeginP9WJM7118 .
?templateMotifSequenceMatchBeginP9WJM7118 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJM7113 ;
faldo:reference isoform:P9WJM7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJM7119 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01698123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJM7MF_01698114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01698122 .
?targetMotifMatchRegionMatchBeginMF_01698122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01698115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01698123 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_01698112, 1, (STRLEN(?templateMotifCigarP9WJM7MF_01698112) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_01698112, CONCAT('^(?:-*[^-]){', STR(((238 - ?templateMotifSequenceMatchBeginPositionP9WJM7113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698114, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698114) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698114, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698114) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01698115) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_01698112, 1, (STRLEN(?templateMotifCigarP9WJM7MF_01698112) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_01698112, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP9WJM7113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698114, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698114) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698114, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698114) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01698115) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('[LIV][ARNDCQEGHILKMFPSTWYVBZJUOX][VILT]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP9WJM7134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJM7136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJM7MF_01698129 .
?templateMotifSequenceMatchRegionP9WJM7134 faldo:begin ?templateMotifSequenceMatchBeginP9WJM7135 .
?templateMotifSequenceMatchBeginP9WJM7135 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJM7130 ;
faldo:reference isoform:P9WJM7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJM7136 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01698140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJM7MF_01698131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01698139 .
?targetMotifMatchRegionMatchBeginMF_01698139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01698132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01698140 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_01698129, 1, (STRLEN(?templateMotifCigarP9WJM7MF_01698129) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_01698129, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionP9WJM7130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698131, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698131) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698131, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698131) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01698132) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_01698129, 1, (STRLEN(?templateMotifCigarP9WJM7MF_01698129) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_01698129, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP9WJM7130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698131, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698131) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698131, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698131) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01698132) - 1) AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][RACGI][ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX][AG][DHKQRSTY]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, (?thisPositionOn35 - ?thisPositionOn34)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP9WJM7151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJM7153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJM7MF_01698146 .
?templateMotifSequenceMatchRegionP9WJM7151 faldo:begin ?templateMotifSequenceMatchBeginP9WJM7152 .
?templateMotifSequenceMatchBeginP9WJM7152 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJM7147 ;
faldo:reference isoform:P9WJM7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJM7153 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01698157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJM7MF_01698148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01698156 .
?targetMotifMatchRegionMatchBeginMF_01698156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01698149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01698157 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_01698146, 1, (STRLEN(?templateMotifCigarP9WJM7MF_01698146) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_01698146, CONCAT('^(?:-*[^-]){', STR(((287 - ?templateMotifSequenceMatchBeginPositionP9WJM7147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698148, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698148) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698148, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698148) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_01698149) - 1) AS ?thisPositionOn41) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_01698146, 1, (STRLEN(?templateMotifCigarP9WJM7MF_01698146) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_01698146, CONCAT('^(?:-*[^-]){', STR(((292 - ?templateMotifSequenceMatchBeginPositionP9WJM7147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698148, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698148) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698148, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698148) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_01698149) - 1) AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX]{4)[RHKNQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP9WJM7168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJM7170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJM7MF_01698163 .
?templateMotifSequenceMatchRegionP9WJM7168 faldo:begin ?templateMotifSequenceMatchBeginP9WJM7169 .
?templateMotifSequenceMatchBeginP9WJM7169 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJM7164 ;
faldo:reference isoform:P9WJM7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJM7170 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01698174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJM7MF_01698165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01698173 .
?targetMotifMatchRegionMatchBeginMF_01698173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01698166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01698174 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_01698163, 1, (STRLEN(?templateMotifCigarP9WJM7MF_01698163) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_01698163, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP9WJM7164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698165, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698165) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698165, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698165) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_01698166) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP9WJM7183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJM7185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJM7MF_01698178 .
?templateMotifSequenceMatchRegionP9WJM7183 faldo:begin ?templateMotifSequenceMatchBeginP9WJM7184 .
?templateMotifSequenceMatchBeginP9WJM7184 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJM7179 ;
faldo:reference isoform:P9WJM7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJM7185 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01698189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJM7MF_01698180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01698188 .
?targetMotifMatchRegionMatchBeginMF_01698188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01698181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01698189 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_01698178, 1, (STRLEN(?templateMotifCigarP9WJM7MF_01698178) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_01698178, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP9WJM7179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698180, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698180) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698180, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698180) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_01698181) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionP9WJM7198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJM7200 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJM7MF_01698193 .
?templateMotifSequenceMatchRegionP9WJM7198 faldo:begin ?templateMotifSequenceMatchBeginP9WJM7199 .
?templateMotifSequenceMatchBeginP9WJM7199 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJM7194 ;
faldo:reference isoform:P9WJM7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJM7200 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01698204 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJM7MF_01698195 .
?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01698203 .
?targetMotifMatchRegionMatchBeginMF_01698203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01698196 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01698204 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_01698193, 1, (STRLEN(?templateMotifCigarP9WJM7MF_01698193) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_01698193, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP9WJM7194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698195, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698195) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698195, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698195) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_01698196) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t207) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP9WJM7213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJM7215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJM7MF_01698208 .
?templateMotifSequenceMatchRegionP9WJM7213 faldo:begin ?templateMotifSequenceMatchBeginP9WJM7214 .
?templateMotifSequenceMatchBeginP9WJM7214 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJM7209 ;
faldo:reference isoform:P9WJM7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJM7215 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01698219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJM7MF_01698210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01698218 .
?targetMotifMatchRegionMatchBeginMF_01698218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01698211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01698219 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_01698208, 1, (STRLEN(?templateMotifCigarP9WJM7MF_01698208) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_01698208, CONCAT('^(?:-*[^-]){', STR(((234 - ?templateMotifSequenceMatchBeginPositionP9WJM7209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698210, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698210) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698210, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698210) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_01698211) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t222) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch227 faldo:location ?templateMotifSequenceMatchRegionP9WJM7228 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WJM7230 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WJM7MF_01698223 .
?templateMotifSequenceMatchRegionP9WJM7228 faldo:begin ?templateMotifSequenceMatchBeginP9WJM7229 .
?templateMotifSequenceMatchBeginP9WJM7229 faldo:position ?templateMotifSequenceMatchBeginPositionP9WJM7224 ;
faldo:reference isoform:P9WJM7-1 .
?templateMotifSequenceProfileAlignmentOperationP9WJM7230 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
?targetMotifMatch231 faldo:location ?targetMotifMatchRegionMatch232 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01698234 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WJM7MF_01698225 .
?targetMotifMatchRegionMatch232 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01698233 .
?targetMotifMatchRegionMatchBeginMF_01698233 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01698226 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01698234 edam:has_input signature:MF_01698 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WJM7MF_01698223, 1, (STRLEN(?templateMotifCigarP9WJM7MF_01698223) - STRLEN(REPLACE(?templateMotifCigarP9WJM7MF_01698223, CONCAT('^(?:-*[^-]){', STR(((282 - ?templateMotifSequenceMatchBeginPositionP9WJM7224) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1235) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698225, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698225) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WJM7MF_01698225, 1, (STRLEN(?targetMotifMatchCigarP9WJM7MF_01698225) - STRLEN(REPLACE(?targetMotifMatchCigarP9WJM7MF_01698225, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1235), '}'), '')))), '[^-]', ''))) AS ?step2236) .
BIND(((?step2236 + ?targetMotifMatchRegionMatchBeginPositionMF_01698226) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t237) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01698a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
}
"xsd:string |
