| http://purl.uniprot.org/unirules/MF_01850#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:648498 up:source unirule:MF_01850 .
_:648499 up:source unirule:MF_01850 .
_:648500 up:source unirule:MF_01850 .
_:648501 up:source unirule:MF_01850 .
_:648502 up:source unirule:MF_01850 .
_:648503 up:source unirule:MF_01850 .
_:648504 up:source unirule:MF_01850 .
_:648505 up:source unirule:MF_01850 .
_:648506 up:source unirule:MF_01850 .
_:648507 up:source unirule:MF_01850 .
_:648508 up:source unirule:MF_01850 .
_:648509 up:source unirule:MF_01850 .
_:648510 up:source unirule:MF_01850 .
_:648511 up:source unirule:MF_01850 .
_:648512 up:source unirule:MF_01850 .
_:648513 up:source unirule:MF_01850 .
_:648514 up:source unirule:MF_01850 .
_:648515 up:source unirule:MF_01850 .
_:648516 up:source unirule:MF_01850 .
_:648517 up:source unirule:MF_01850 .
_:648518 up:source unirule:MF_01850 .
_:648519 up:source unirule:MF_01850 .
_:648520 up:source unirule:MF_01850 .
_:648521 up:source unirule:MF_01850 .
_:648522 up:source unirule:MF_01850 .
_:648523 up:source unirule:MF_01850 .
_:648524 up:source unirule:MF_01850 .
_:648525 up:source unirule:MF_01850 .
_:648526 up:source unirule:MF_01850 .
_:648527 up:source unirule:MF_01850 .
_:648528 up:source unirule:MF_01850 .
_:648529 up:source unirule:MF_01850 .
_:648530 up:source unirule:MF_01850 .
_:648531 up:source unirule:MF_01850 .
_:648532 up:source unirule:MF_01850 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation13 ,
?annotation14 ;
up:classifiedWith GO:0000287 ,
GO:0005524 ,
GO:0005737 ,
GO:0016783 ,
GO:0034227 ,
GO:0051539 ,
keyword:408 ,
keyword:411 ,
keyword:460 ,
keyword:479 ,
keyword:4 ,
keyword:547 ,
keyword:67 ,
keyword:694 ,
keyword:808 ,
keyword:819 ,
keyword:820 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.8.1.-' ;
up:fullName 'tRNA-cytidine(32) 2-sulfurtransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Two-thiocytidine biosynthesis protein A' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'tRNA 2-thiocytidine biosynthesis protein TtcA' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'ttcA' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity .
?annotation7 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 [4Fe-4S] cluster per subunit. The cluster is chelated by three Cys residues, the fourth Fe has a free coordination site that may bind a sulfur atom transferred from the persulfide of IscS' .
?annotation8 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'tRNA modification.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation11 a up:Subcellular_Location_Annotation .
?annotation11li12 up:cellularComponent .
?annotation13 a up:Annotation ;
rdfs:comment 'The thiolation reaction likely consists of two steps: a first activation step by ATP to form an adenylated intermediate of the target base of tRNA, and a second nucleophilic substitution step of the sulfur (S) atom supplied by the hydrosulfide attached to the Fe-S cluster.' .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TtcA family.' .
?pfs15 up:annotation ?annotation16 ,
?annotation22 ,
?annotation28 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:49883 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:49883 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:49883 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'PP-loop motif' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
_:648533 a rdf:Statement ;
up:attribution _:648498 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:648534 a rdf:Statement ;
up:attribution _:648499 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:648535 a rdf:Statement ;
up:attribution _:648500 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:648536 a rdf:Statement ;
up:attribution _:648501 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:648537 a rdf:Statement ;
up:attribution _:648502 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:648538 a rdf:Statement ;
up:attribution _:648503 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:648539 a rdf:Statement ;
up:attribution _:648504 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:648540 a rdf:Statement ;
up:attribution _:648505 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:648541 a rdf:Statement ;
up:attribution _:648506 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:648542 a rdf:Statement ;
up:attribution _:648507 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:648543 a rdf:Statement ;
up:attribution _:648508 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:648544 a rdf:Statement ;
up:attribution _:648509 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:648545 a rdf:Statement ;
up:attribution _:648510 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:648546 a rdf:Statement ;
up:attribution _:648511 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:648547 a rdf:Statement ;
up:attribution _:648512 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:648548 a rdf:Statement ;
up:attribution _:648513 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:648549 a rdf:Statement ;
up:attribution _:648514 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:648550 a rdf:Statement ;
up:attribution _:648515 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:648551 a rdf:Statement ;
up:attribution _:648516 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:648552 a rdf:Statement ;
up:attribution _:648517 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:648553 a rdf:Statement ;
up:attribution _:648518 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:648554 a rdf:Statement ;
up:attribution _:648519 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:648555 a rdf:Statement ;
up:attribution _:648520 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:648556 a rdf:Statement ;
up:attribution _:648521 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:648557 a rdf:Statement ;
up:attribution _:648522 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:820 .
_:648558 a rdf:Statement ;
up:attribution _:648523 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:648559 a rdf:Statement ;
up:attribution _:648524 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:648560 a rdf:Statement ;
up:attribution _:648525 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016783 .
_:648561 a rdf:Statement ;
up:attribution _:648526 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
_:648562 a rdf:Statement ;
up:attribution _:648527 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0034227 .
_:648563 a rdf:Statement ;
up:attribution _:648528 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:648564 a rdf:Statement ;
up:source unirule:MF_01850 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:648565 a rdf:Statement ;
up:attribution _:648529 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:648566 a rdf:Statement ;
up:source unirule:MF_01850 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:648567 a rdf:Statement ;
up:attribution _:648530 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:648568 a rdf:Statement ;
up:source unirule:MF_01850 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:648569 a rdf:Statement ;
up:attribution _:648531 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:648570 a rdf:Statement ;
up:source unirule:MF_01850 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:648571 a rdf:Statement ;
up:attribution _:648532 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01850
#Rule MF_01850 Created by:? on:2008-07-15 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon40 {taxon:976 taxon:155977 taxon:1297 taxon:1224}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01850 .
?thisOrganism rdfs:subClassOf+ ?supertaxon40 .
BIND(URI(CONCAT(STR(?this), '#MF_01850a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a14')) AS ?annotation14) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP7605546 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7605548 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76055MF_0185041 .
?templateMotifSequenceMatchRegionP7605546 faldo:begin ?templateMotifSequenceMatchBeginP7605547 .
?templateMotifSequenceMatchBeginP7605547 faldo:position ?templateMotifSequenceMatchBeginPositionP7605542 ;
faldo:reference isoform:P76055-1 .
?templateMotifSequenceProfileAlignmentOperationP7605548 edam:has_input signature:MF_01850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0185052 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76055MF_0185043 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0185051 .
?targetMotifMatchRegionMatchBeginMF_0185051 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0185044 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0185052 edam:has_input signature:MF_01850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76055MF_0185041, 1, (STRLEN(?templateMotifCigarP76055MF_0185041) - STRLEN(REPLACE(?templateMotifCigarP76055MF_0185041, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP7605542) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76055MF_0185043, 1, (STRLEN(?targetMotifMatchCigarP76055MF_0185043) - STRLEN(REPLACE(?targetMotifMatchCigarP76055MF_0185043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76055MF_0185043, 1, (STRLEN(?targetMotifMatchCigarP76055MF_0185043) - STRLEN(REPLACE(?targetMotifMatchCigarP76055MF_0185043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0185044) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76055MF_0185041, 1, (STRLEN(?templateMotifCigarP76055MF_0185041) - STRLEN(REPLACE(?templateMotifCigarP76055MF_0185041, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP7605542) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76055MF_0185043, 1, (STRLEN(?targetMotifMatchCigarP76055MF_0185043) - STRLEN(REPLACE(?targetMotifMatchCigarP76055MF_0185043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76055MF_0185043, 1, (STRLEN(?targetMotifMatchCigarP76055MF_0185043) - STRLEN(REPLACE(?targetMotifMatchCigarP76055MF_0185043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0185044) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76055MF_0185041, 1, (STRLEN(?templateMotifCigarP76055MF_0185041) - STRLEN(REPLACE(?templateMotifCigarP76055MF_0185041, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP7605542) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76055MF_0185043, 1, (STRLEN(?targetMotifMatchCigarP76055MF_0185043) - STRLEN(REPLACE(?targetMotifMatchCigarP76055MF_0185043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76055MF_0185043, 1, (STRLEN(?targetMotifMatchCigarP76055MF_0185043) - STRLEN(REPLACE(?targetMotifMatchCigarP76055MF_0185043, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0185044) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'C')) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP7605567 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7605569 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76055MF_0185062 .
?templateMotifSequenceMatchRegionP7605567 faldo:begin ?templateMotifSequenceMatchBeginP7605568 .
?templateMotifSequenceMatchBeginP7605568 faldo:position ?templateMotifSequenceMatchBeginPositionP7605563 ;
faldo:reference isoform:P76055-1 .
?templateMotifSequenceProfileAlignmentOperationP7605569 edam:has_input signature:MF_01850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0185073 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76055MF_0185064 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0185072 .
?targetMotifMatchRegionMatchBeginMF_0185072 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0185065 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0185073 edam:has_input signature:MF_01850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76055MF_0185062, 1, (STRLEN(?templateMotifCigarP76055MF_0185062) - STRLEN(REPLACE(?templateMotifCigarP76055MF_0185062, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP7605563) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76055MF_0185064, 1, (STRLEN(?targetMotifMatchCigarP76055MF_0185064) - STRLEN(REPLACE(?targetMotifMatchCigarP76055MF_0185064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76055MF_0185064, 1, (STRLEN(?targetMotifMatchCigarP76055MF_0185064) - STRLEN(REPLACE(?targetMotifMatchCigarP76055MF_0185064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0185065) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76055MF_0185062, 1, (STRLEN(?templateMotifCigarP76055MF_0185062) - STRLEN(REPLACE(?templateMotifCigarP76055MF_0185062, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP7605563) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76055MF_0185064, 1, (STRLEN(?targetMotifMatchCigarP76055MF_0185064) - STRLEN(REPLACE(?targetMotifMatchCigarP76055MF_0185064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76055MF_0185064, 1, (STRLEN(?targetMotifMatchCigarP76055MF_0185064) - STRLEN(REPLACE(?targetMotifMatchCigarP76055MF_0185064, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0185065) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)) = 'SGGKDS')) .
BIND(URI(CONCAT(STR(?this), '#MF_01850a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
}
"xsd:string |
