| http://purl.uniprot.org/unirules/MF_01886#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:660402 up:source unirule:MF_01886 .
_:660403 up:source unirule:MF_01886 .
_:660404 up:source unirule:MF_01886 .
_:660405 up:source unirule:MF_01886 .
_:660406 up:source unirule:MF_01886 .
_:660407 up:source unirule:MF_01886 .
_:660408 up:source unirule:MF_01886 .
_:660409 up:source unirule:MF_01886 .
_:660410 up:source unirule:MF_01886 .
_:660411 up:source unirule:MF_01886 .
_:660412 up:source unirule:MF_01886 .
_:660413 up:source unirule:MF_01886 .
_:660414 up:source unirule:MF_01886 .
_:660415 up:source unirule:MF_01886 .
_:660416 up:source unirule:MF_01886 .
_:660417 up:source unirule:MF_01886 .
_:660418 up:source unirule:MF_01886 .
_:660419 up:source unirule:MF_01886 .
_:660420 up:source unirule:MF_01886 .
_:660421 up:source unirule:MF_01886 .
_:660422 up:source unirule:MF_01886 .
_:660423 up:source unirule:MF_01886 .
_:660424 up:source unirule:MF_01886 .
_:660425 up:source unirule:MF_01886 .
_:660426 up:source unirule:MF_01886 .
_:660427 up:source unirule:MF_01886 .
_:660428 up:source unirule:MF_01886 .
_:660429 up:source unirule:MF_01886 .
_:660430 up:source unirule:MF_01886 .
_:660431 up:source unirule:MF_01886 .
_:660432 up:source unirule:MF_01886 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0000049 ,
GO:0002101 ,
GO:0005524 ,
GO:0005737 ,
GO:0051391 ,
GO:0051392 ,
keyword:12 ,
keyword:547 ,
keyword:67 ,
keyword:694 ,
keyword:808 ,
keyword:819 ,
keyword:820 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.193' ;
up:fullName 'tRNA(Met) cytidine acetyltransferase TmcA' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'tmcA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TmcA family.' .
?case8 up:classifiedWith GO:1990882 ,
keyword:698 ,
keyword:699 .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:30616 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:30616 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:57288 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:57288 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:30616 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:30616 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:57288 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:57288 .
_:660433 a rdf:Statement ;
up:attribution _:660402 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:660434 a rdf:Statement ;
up:attribution _:660403 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:660435 a rdf:Statement ;
up:attribution _:660404 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:660436 a rdf:Statement ;
up:attribution _:660405 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:660437 a rdf:Statement ;
up:attribution _:660406 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:660438 a rdf:Statement ;
up:attribution _:660407 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:660439 a rdf:Statement ;
up:attribution _:660408 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:660440 a rdf:Statement ;
up:attribution _:660409 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:660441 a rdf:Statement ;
up:attribution _:660410 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:660442 a rdf:Statement ;
up:attribution _:660411 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:660443 a rdf:Statement ;
up:attribution _:660412 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:660444 a rdf:Statement ;
up:attribution _:660413 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:660445 a rdf:Statement ;
up:attribution _:660414 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:660446 a rdf:Statement ;
up:attribution _:660415 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:820 .
_:660447 a rdf:Statement ;
up:attribution _:660416 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:660448 a rdf:Statement ;
up:attribution _:660417 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000049 .
_:660449 a rdf:Statement ;
up:attribution _:660418 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051392 .
_:660450 a rdf:Statement ;
up:attribution _:660419 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051391 .
_:660451 a rdf:Statement ;
up:attribution _:660420 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002101 .
_:660452 a rdf:Statement ;
up:attribution _:660421 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:660453 a rdf:Statement ;
up:attribution _:660422 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:660454 a rdf:Statement ;
up:attribution _:660423 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:699 .
_:660455 a rdf:Statement ;
up:attribution _:660424 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1990882 .
_:660456 a rdf:Statement ;
up:source unirule:MF_01886 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:660457 a rdf:Statement ;
up:attribution _:660425 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:660458 a rdf:Statement ;
up:source unirule:MF_01886 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:660459 a rdf:Statement ;
up:attribution _:660426 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:660460 a rdf:Statement ;
up:source unirule:MF_01886 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:660461 a rdf:Statement ;
up:attribution _:660427 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:660462 a rdf:Statement ;
up:source unirule:MF_01886 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:660463 a rdf:Statement ;
up:attribution _:660428 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:660464 a rdf:Statement ;
up:source unirule:MF_01886 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:660465 a rdf:Statement ;
up:attribution _:660429 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:660466 a rdf:Statement ;
up:source unirule:MF_01886 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:660467 a rdf:Statement ;
up:attribution _:660430 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:660468 a rdf:Statement ;
up:source unirule:MF_01886 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:660469 a rdf:Statement ;
up:attribution _:660431 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:660470 a rdf:Statement ;
up:source unirule:MF_01886 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:660471 a rdf:Statement ;
up:attribution _:660432 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01886
#Rule MF_01886 Created by:? on:2010-11-04 Modified by:Catherine Rivoire on:2025-06-12
VALUES ?supertaxon65 {taxon:1236 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01886 .
?thisOrganism rdfs:subClassOf+ ?supertaxon65 .
BIND(URI(CONCAT(STR(?this), '#MF_01886a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP7656271 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7656273 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76562MF_0188666 .
?templateMotifSequenceMatchRegionP7656271 faldo:begin ?templateMotifSequenceMatchBeginP7656272 .
?templateMotifSequenceMatchBeginP7656272 faldo:position ?templateMotifSequenceMatchBeginPositionP7656267 ;
faldo:reference isoform:P76562-1 .
?templateMotifSequenceProfileAlignmentOperationP7656273 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188677 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76562MF_0188668 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188676 .
?targetMotifMatchRegionMatchBeginMF_0188676 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188669 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0188677 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188666, 1, (STRLEN(?templateMotifCigarP76562MF_0188666) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188666, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP7656267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188668, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188668) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188668, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188668, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188668) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188668, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0188669) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188666, 1, (STRLEN(?templateMotifCigarP76562MF_0188666) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188666, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP7656267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188668, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188668) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188668, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188668, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188668) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188668, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0188669) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'GA')) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP7656288 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7656290 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76562MF_0188683 .
?templateMotifSequenceMatchRegionP7656288 faldo:begin ?templateMotifSequenceMatchBeginP7656289 .
?templateMotifSequenceMatchBeginP7656289 faldo:position ?templateMotifSequenceMatchBeginPositionP7656284 ;
faldo:reference isoform:P76562-1 .
?templateMotifSequenceProfileAlignmentOperationP7656290 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0188694 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76562MF_0188685 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0188693 .
?targetMotifMatchRegionMatchBeginMF_0188693 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0188686 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0188694 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188683, 1, (STRLEN(?templateMotifCigarP76562MF_0188683) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188683, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP7656284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188685, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188685) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188685, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188685, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188685) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188685, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0188686) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_0188683, 1, (STRLEN(?templateMotifCigarP76562MF_0188683) - STRLEN(REPLACE(?templateMotifCigarP76562MF_0188683, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionP7656284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_0188685, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188685) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188685, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_0188685, 1, (STRLEN(?targetMotifMatchCigarP76562MF_0188685) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_0188685, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0188686) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)) = 'GRGKSALAGQ')) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP76562105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76562MF_01886100 .
?templateMotifSequenceMatchRegionP76562105 faldo:begin ?templateMotifSequenceMatchBeginP76562106 .
?templateMotifSequenceMatchBeginP76562106 faldo:position ?templateMotifSequenceMatchBeginPositionP76562101 ;
faldo:reference isoform:P76562-1 .
?templateMotifSequenceProfileAlignmentOperationP76562107 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76562MF_01886102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886110 .
?targetMotifMatchRegionMatchBeginMF_01886110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01886111 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886100, 1, (STRLEN(?templateMotifCigarP76562MF_01886100) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886100, CONCAT('^(?:-*[^-]){', STR(((461 - ?templateMotifSequenceMatchBeginPositionP76562101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886102, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886102) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886102, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886102) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01886103) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886100, 1, (STRLEN(?templateMotifCigarP76562MF_01886100) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886100, CONCAT('^(?:-*[^-]){', STR(((463 - ?templateMotifSequenceMatchBeginPositionP76562101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886102, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886102) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886102, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886102) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01886103) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER (REGEX('[IV]A[VT]', SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP76562122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76562MF_01886117 .
?templateMotifSequenceMatchRegionP76562122 faldo:begin ?templateMotifSequenceMatchBeginP76562123 .
?templateMotifSequenceMatchBeginP76562123 faldo:position ?templateMotifSequenceMatchBeginPositionP76562118 ;
faldo:reference isoform:P76562-1 .
?templateMotifSequenceProfileAlignmentOperationP76562124 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76562MF_01886119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886127 .
?targetMotifMatchRegionMatchBeginMF_01886127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01886128 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886117, 1, (STRLEN(?templateMotifCigarP76562MF_01886117) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886117, CONCAT('^(?:-*[^-]){', STR(((468 - ?templateMotifSequenceMatchBeginPositionP76562118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886119, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886119) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886119, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886119) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01886120) - 1) AS ?thisPositionOn35) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886117, 1, (STRLEN(?templateMotifCigarP76562MF_01886117) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886117, CONCAT('^(?:-*[^-]){', STR(((474 - ?templateMotifSequenceMatchBeginPositionP76562118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886119, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886119) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886119, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886119) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01886120) - 1) AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)) = 'QREGTGR')) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP76562139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76562MF_01886134 .
?templateMotifSequenceMatchRegionP76562139 faldo:begin ?templateMotifSequenceMatchBeginP76562140 .
?templateMotifSequenceMatchBeginP76562140 faldo:position ?templateMotifSequenceMatchBeginPositionP76562135 ;
faldo:reference isoform:P76562-1 .
?templateMotifSequenceProfileAlignmentOperationP76562141 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76562MF_01886136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886144 .
?targetMotifMatchRegionMatchBeginMF_01886144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01886145 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886134, 1, (STRLEN(?templateMotifCigarP76562MF_01886134) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886134, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP76562135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886136, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886136) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886136, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886136) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01886137) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP76562154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76562MF_01886149 .
?templateMotifSequenceMatchRegionP76562154 faldo:begin ?templateMotifSequenceMatchBeginP76562155 .
?templateMotifSequenceMatchBeginP76562155 faldo:position ?templateMotifSequenceMatchBeginPositionP76562150 ;
faldo:reference isoform:P76562-1 .
?templateMotifSequenceProfileAlignmentOperationP76562156 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76562MF_01886151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886159 .
?targetMotifMatchRegionMatchBeginMF_01886159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01886160 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886149, 1, (STRLEN(?templateMotifCigarP76562MF_01886149) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886149, CONCAT('^(?:-*[^-]){', STR(((319 - ?templateMotifSequenceMatchBeginPositionP76562150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886151, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886151) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886151, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886151) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01886152) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP76562169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76562MF_01886164 .
?templateMotifSequenceMatchRegionP76562169 faldo:begin ?templateMotifSequenceMatchBeginP76562170 .
?templateMotifSequenceMatchBeginP76562170 faldo:position ?templateMotifSequenceMatchBeginPositionP76562165 ;
faldo:reference isoform:P76562-1 .
?templateMotifSequenceProfileAlignmentOperationP76562171 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76562MF_01886166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886174 .
?targetMotifMatchRegionMatchBeginMF_01886174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01886175 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886164, 1, (STRLEN(?templateMotifCigarP76562MF_01886164) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886164, CONCAT('^(?:-*[^-]){', STR(((499 - ?templateMotifSequenceMatchBeginPositionP76562165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886166, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886166) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886166, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886166) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01886167) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionP76562184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76562186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76562MF_01886179 .
?templateMotifSequenceMatchRegionP76562184 faldo:begin ?templateMotifSequenceMatchBeginP76562185 .
?templateMotifSequenceMatchBeginP76562185 faldo:position ?templateMotifSequenceMatchBeginPositionP76562180 ;
faldo:reference isoform:P76562-1 .
?templateMotifSequenceProfileAlignmentOperationP76562186 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01886190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76562MF_01886181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01886189 .
?targetMotifMatchRegionMatchBeginMF_01886189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01886182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01886190 edam:has_input signature:MF_01886 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76562MF_01886179, 1, (STRLEN(?templateMotifCigarP76562MF_01886179) - STRLEN(REPLACE(?templateMotifCigarP76562MF_01886179, CONCAT('^(?:-*[^-]){', STR(((506 - ?templateMotifSequenceMatchBeginPositionP76562180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76562MF_01886181, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886181) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76562MF_01886181, 1, (STRLEN(?targetMotifMatchCigarP76562MF_01886181) - STRLEN(REPLACE(?targetMotifMatchCigarP76562MF_01886181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_01886182) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t193) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01886a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2258 .
BIND(?this AS ?case8) .
}
}
"xsd:string |
