| http://purl.uniprot.org/unirules/MF_01931#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:675468 up:source unirule:MF_01931 .
_:675469 up:source unirule:MF_01931 .
_:675470 up:source unirule:MF_01931 .
_:675471 up:source unirule:MF_01931 .
_:675472 up:source unirule:MF_01931 .
_:675473 up:source unirule:MF_01931 .
_:675474 up:source unirule:MF_01931 .
_:675475 up:source unirule:MF_01931 .
_:675476 up:source unirule:MF_01931 .
_:675477 up:source unirule:MF_01931 .
_:675478 up:source unirule:MF_01931 .
_:675479 up:source unirule:MF_01931 .
_:675480 up:source unirule:MF_01931 .
_:675481 up:source unirule:MF_01931 .
_:675482 up:source unirule:MF_01931 .
_:675483 up:source unirule:MF_01931 .
_:675484 up:source unirule:MF_01931 .
_:675485 up:source unirule:MF_01931 .
_:675486 up:source unirule:MF_01931 .
_:675487 up:source unirule:MF_01931 .
_:675488 up:source unirule:MF_01931 .
_:675489 up:source unirule:MF_01931 .
_:675490 up:source unirule:MF_01931 .
_:675491 up:source unirule:MF_01931 .
_:675492 up:source unirule:MF_01931 .
_:675493 up:source unirule:MF_01931 .
_:675494 up:source unirule:MF_01931 .
_:675495 up:source unirule:MF_01931 .
_:675496 up:source unirule:MF_01931 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0004044 ,
GO:0006189 ,
keyword:315 ,
keyword:328 ,
keyword:658 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.2.14' ;
up:fullName 'Amidophosphoribosyltransferase' ;
up:shortName 'ATase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Glutamine phosphoribosylpyrophosphate amidotransferase' ;
up:shortName 'GPATase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'purF' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/2.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.' .
?case8 up:classifiedWith GO:0051536 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 .
?case9 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?pfs10 up:annotation ?annotation11 ,
?annotation17 ,
?annotation23 ,
?annotation29 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:49883 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:49883 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:49883 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:49883 .
?pfs35 up:annotation ?annotation36 ,
?annotation42 ,
?annotation48 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:18420 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:18420 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:18420 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
_:675497 a rdf:Statement ;
up:attribution _:675468 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:675498 a rdf:Statement ;
up:attribution _:675469 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:675499 a rdf:Statement ;
up:attribution _:675470 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:675500 a rdf:Statement ;
up:attribution _:675471 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:675501 a rdf:Statement ;
up:attribution _:675472 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:675502 a rdf:Statement ;
up:attribution _:675473 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:675503 a rdf:Statement ;
up:attribution _:675474 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:675504 a rdf:Statement ;
up:attribution _:675475 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:315 .
_:675505 a rdf:Statement ;
up:attribution _:675476 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:675506 a rdf:Statement ;
up:attribution _:675477 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:658 .
_:675507 a rdf:Statement ;
up:attribution _:675478 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:675508 a rdf:Statement ;
up:attribution _:675479 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004044 .
_:675509 a rdf:Statement ;
up:attribution _:675480 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006189 .
_:675510 a rdf:Statement ;
up:attribution _:675481 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:675511 a rdf:Statement ;
up:attribution _:675482 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:675512 a rdf:Statement ;
up:attribution _:675483 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:675513 a rdf:Statement ;
up:attribution _:675484 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:675514 a rdf:Statement ;
up:attribution _:675485 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051536 .
_:675515 a rdf:Statement ;
up:attribution _:675486 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:675516 a rdf:Statement ;
up:attribution _:675487 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:675517 a rdf:Statement ;
up:attribution _:675488 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:675518 a rdf:Statement ;
up:source unirule:MF_01931 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:675519 a rdf:Statement ;
up:attribution _:675489 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:675520 a rdf:Statement ;
up:source unirule:MF_01931 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:675521 a rdf:Statement ;
up:attribution _:675490 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:675522 a rdf:Statement ;
up:source unirule:MF_01931 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:675523 a rdf:Statement ;
up:attribution _:675491 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:675524 a rdf:Statement ;
up:source unirule:MF_01931 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:675525 a rdf:Statement ;
up:attribution _:675492 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:675526 a rdf:Statement ;
up:source unirule:MF_01931 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:675527 a rdf:Statement ;
up:attribution _:675493 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:675528 a rdf:Statement ;
up:source unirule:MF_01931 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:675529 a rdf:Statement ;
up:attribution _:675494 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:675530 a rdf:Statement ;
up:source unirule:MF_01931 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:675531 a rdf:Statement ;
up:attribution _:675495 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:675532 a rdf:Statement ;
up:source unirule:MF_01931 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:675533 a rdf:Statement ;
up:attribution _:675496 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01931
#Rule MF_01931 Created by:? on:2014-09-04 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon60 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01931 .
?thisOrganism rdfs:subClassOf+ ?supertaxon60 .
BIND(URI(CONCAT(STR(?this), '#MF_01931a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01931a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01931a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01931a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01931a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01931a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP0049766 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0049768 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00497MF_0193161 .
?templateMotifSequenceMatchRegionP0049766 faldo:begin ?templateMotifSequenceMatchBeginP0049767 .
?templateMotifSequenceMatchBeginP0049767 faldo:position ?templateMotifSequenceMatchBeginPositionP0049762 ;
faldo:reference isoform:P00497-1 .
?templateMotifSequenceProfileAlignmentOperationP0049768 edam:has_input signature:MF_01931 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0193172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00497MF_0193163 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193171 .
?targetMotifMatchRegionMatchBeginMF_0193171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0193172 edam:has_input signature:MF_01931 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00497MF_0193161, 1, (STRLEN(?templateMotifCigarP00497MF_0193161) - STRLEN(REPLACE(?templateMotifCigarP00497MF_0193161, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP0049762) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00497MF_0193163, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193163) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00497MF_0193163, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193163) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0193164) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00497MF_0193161, 1, (STRLEN(?templateMotifCigarP00497MF_0193161) - STRLEN(REPLACE(?templateMotifCigarP00497MF_0193161, CONCAT('^(?:-*[^-]){', STR(((393 - ?templateMotifSequenceMatchBeginPositionP0049762) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00497MF_0193163, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193163) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00497MF_0193163, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193163) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0193164) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00497MF_0193161, 1, (STRLEN(?templateMotifCigarP00497MF_0193161) - STRLEN(REPLACE(?templateMotifCigarP00497MF_0193161, CONCAT('^(?:-*[^-]){', STR(((448 - ?templateMotifSequenceMatchBeginPositionP0049762) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00497MF_0193163, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193163) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00497MF_0193163, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193163) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0193164) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00497MF_0193161, 1, (STRLEN(?templateMotifCigarP00497MF_0193161) - STRLEN(REPLACE(?templateMotifCigarP00497MF_0193161, CONCAT('^(?:-*[^-]){', STR(((451 - ?templateMotifSequenceMatchBeginPositionP0049762) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00497MF_0193163, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193163) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00497MF_0193163, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193163) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0193164) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'C')) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP0049790 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0049792 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00497MF_0193185 .
?templateMotifSequenceMatchRegionP0049790 faldo:begin ?templateMotifSequenceMatchBeginP0049791 .
?templateMotifSequenceMatchBeginP0049791 faldo:position ?templateMotifSequenceMatchBeginPositionP0049786 ;
faldo:reference isoform:P00497-1 .
?templateMotifSequenceProfileAlignmentOperationP0049792 edam:has_input signature:MF_01931 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0193196 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00497MF_0193187 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0193195 .
?targetMotifMatchRegionMatchBeginMF_0193195 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0193188 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0193196 edam:has_input signature:MF_01931 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00497MF_0193185, 1, (STRLEN(?templateMotifCigarP00497MF_0193185) - STRLEN(REPLACE(?templateMotifCigarP00497MF_0193185, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionP0049786) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00497MF_0193187, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193187) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00497MF_0193187, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193187) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0193188) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00497MF_0193185, 1, (STRLEN(?templateMotifCigarP00497MF_0193185) - STRLEN(REPLACE(?templateMotifCigarP00497MF_0193185, CONCAT('^(?:-*[^-]){', STR(((356 - ?templateMotifSequenceMatchBeginPositionP0049786) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00497MF_0193187, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193187) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00497MF_0193187, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193187) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0193188) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs2t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00497MF_0193185, 1, (STRLEN(?templateMotifCigarP00497MF_0193185) - STRLEN(REPLACE(?templateMotifCigarP00497MF_0193185, CONCAT('^(?:-*[^-]){', STR(((357 - ?templateMotifSequenceMatchBeginPositionP0049786) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00497MF_0193187, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193187) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00497MF_0193187, 1, (STRLEN(?targetMotifMatchCigarP00497MF_0193187) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_0193187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0193188) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs2t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'D')) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionP00497111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00497113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00497MF_01931106 .
?templateMotifSequenceMatchRegionP00497111 faldo:begin ?templateMotifSequenceMatchBeginP00497112 .
?templateMotifSequenceMatchBeginP00497112 faldo:position ?templateMotifSequenceMatchBeginPositionP00497107 ;
faldo:reference isoform:P00497-1 .
?templateMotifSequenceProfileAlignmentOperationP00497113 edam:has_input signature:MF_01931 ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01931117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00497MF_01931108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01931116 .
?targetMotifMatchRegionMatchBeginMF_01931116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01931109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01931117 edam:has_input signature:MF_01931 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00497MF_01931106, 1, (STRLEN(?templateMotifCigarP00497MF_01931106) - STRLEN(REPLACE(?templateMotifCigarP00497MF_01931106, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP00497107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00497MF_01931108, 1, (STRLEN(?targetMotifMatchCigarP00497MF_01931108) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_01931108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00497MF_01931108, 1, (STRLEN(?targetMotifMatchCigarP00497MF_01931108) - STRLEN(REPLACE(?targetMotifMatchCigarP00497MF_01931108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_01931109) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs3t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01931a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag121) .
}
BIND(IF(BOUND(?tagFTGRP_2), ?caseWithTag121, ?UNBOUND_VARIABLE) AS ?case8) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag122) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag122, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
