| http://purl.uniprot.org/unirules/MF_01969#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:691424 up:source unirule:MF_01969 .
_:691425 up:source unirule:MF_01969 .
_:691426 up:source unirule:MF_01969 .
_:691427 up:source unirule:MF_01969 .
_:691428 up:source unirule:MF_01969 .
_:691429 up:source unirule:MF_01969 .
_:691430 up:source unirule:MF_01969 .
_:691431 up:source unirule:MF_01969 .
_:691432 up:source unirule:MF_01969 .
_:691433 up:source unirule:MF_01969 .
_:691434 up:source unirule:MF_01969 .
_:691435 up:source unirule:MF_01969 .
_:691436 up:source unirule:MF_01969 .
_:691437 up:source unirule:MF_01969 .
_:691438 up:source unirule:MF_01969 .
_:691439 up:source unirule:MF_01969 .
_:691440 up:source unirule:MF_01969 .
_:691441 up:source unirule:MF_01969 .
_:691442 up:source unirule:MF_01969 .
_:691443 up:source unirule:MF_01969 .
_:691444 up:source unirule:MF_01969 .
_:691445 up:source unirule:MF_01969 .
_:691446 up:source unirule:MF_01969 .
_:691447 up:source unirule:MF_01969 .
_:691448 up:source unirule:MF_01969 .
_:691449 up:source unirule:MF_01969 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0004061 ,
GO:0008270 ,
GO:0019441 ,
keyword:378 ,
keyword:479 ,
keyword:823 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.9' ;
up:fullName 'Kynurenine formamidase' ;
up:shortName 'KFase' ,
'KFA' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Arylformamidase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'N-formylkynurenine formamidase' ;
up:shortName 'FKF' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'kynB' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolysis of N-formyl-L-kynurenine to L-kynurenine, the second step in the kynurenine pathway of tryptophan degradation.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 zinc ions per subunit.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-tryptophan degradation via kynurenine pathway; L-kynurenine from L-tryptophan: step 2/2.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Cyclase 1 superfamily. KynB family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:29105 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:29105 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:29105 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:29105 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:29105 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:29105 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf ?molecule71 .
?molecule71 rdfs:label 'substrate' .
_:691450 a rdf:Statement ;
up:attribution _:691424 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:691451 a rdf:Statement ;
up:attribution _:691425 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:691452 a rdf:Statement ;
up:attribution _:691426 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:691453 a rdf:Statement ;
up:attribution _:691427 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:691454 a rdf:Statement ;
up:attribution _:691428 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:691455 a rdf:Statement ;
up:attribution _:691429 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:691456 a rdf:Statement ;
up:attribution _:691430 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:691457 a rdf:Statement ;
up:attribution _:691431 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:691458 a rdf:Statement ;
up:attribution _:691432 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:691459 a rdf:Statement ;
up:attribution _:691433 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:691460 a rdf:Statement ;
up:attribution _:691434 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:691461 a rdf:Statement ;
up:attribution _:691435 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:691462 a rdf:Statement ;
up:attribution _:691436 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:823 .
_:691463 a rdf:Statement ;
up:attribution _:691437 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:691464 a rdf:Statement ;
up:attribution _:691438 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004061 .
_:691465 a rdf:Statement ;
up:attribution _:691439 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:691466 a rdf:Statement ;
up:attribution _:691440 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019441 .
_:691467 a rdf:Statement ;
up:source unirule:MF_01969 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:691468 a rdf:Statement ;
up:attribution _:691441 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:691469 a rdf:Statement ;
up:source unirule:MF_01969 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:691470 a rdf:Statement ;
up:attribution _:691442 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:691471 a rdf:Statement ;
up:source unirule:MF_01969 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:691472 a rdf:Statement ;
up:attribution _:691443 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:691473 a rdf:Statement ;
up:source unirule:MF_01969 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:691474 a rdf:Statement ;
up:attribution _:691444 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:691475 a rdf:Statement ;
up:source unirule:MF_01969 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:691476 a rdf:Statement ;
up:attribution _:691445 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:691477 a rdf:Statement ;
up:source unirule:MF_01969 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:691478 a rdf:Statement ;
up:attribution _:691446 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:691479 a rdf:Statement ;
up:source unirule:MF_01969 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:691480 a rdf:Statement ;
up:attribution _:691447 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:691481 a rdf:Statement ;
up:source unirule:MF_01969 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:691482 a rdf:Statement ;
up:attribution _:691448 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:691483 a rdf:Statement ;
up:source unirule:MF_01969 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:691484 a rdf:Statement ;
up:attribution _:691449 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01969
#Rule MF_01969 Created by:? on:2012-07-30 Modified by:Catherine Rivoire on:2025-01-14
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01969 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01969a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionQ81PP979 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81PP981 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81PP9MF_0196974 .
?templateMotifSequenceMatchRegionQ81PP979 faldo:begin ?templateMotifSequenceMatchBeginQ81PP980 .
?templateMotifSequenceMatchBeginQ81PP980 faldo:position ?templateMotifSequenceMatchBeginPositionQ81PP975 ;
faldo:reference isoform:Q81PP9-1 .
?templateMotifSequenceProfileAlignmentOperationQ81PP981 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0196985 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81PP9MF_0196976 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0196984 .
?targetMotifMatchRegionMatchBeginMF_0196984 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196977 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0196985 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81PP9MF_0196974, 1, (STRLEN(?templateMotifCigarQ81PP9MF_0196974) - STRLEN(REPLACE(?templateMotifCigarQ81PP9MF_0196974, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionQ81PP975) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81PP9MF_0196976, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_0196976) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_0196976, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81PP9MF_0196976, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_0196976) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_0196976, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0196977) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionQ81PP994 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81PP996 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81PP9MF_0196989 .
?templateMotifSequenceMatchRegionQ81PP994 faldo:begin ?templateMotifSequenceMatchBeginQ81PP995 .
?templateMotifSequenceMatchBeginQ81PP995 faldo:position ?templateMotifSequenceMatchBeginPositionQ81PP990 ;
faldo:reference isoform:Q81PP9-1 .
?templateMotifSequenceProfileAlignmentOperationQ81PP996 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01969100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81PP9MF_0196991 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0196999 .
?targetMotifMatchRegionMatchBeginMF_0196999 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196992 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01969100 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81PP9MF_0196989, 1, (STRLEN(?templateMotifCigarQ81PP9MF_0196989) - STRLEN(REPLACE(?templateMotifCigarQ81PP9MF_0196989, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionQ81PP990) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81PP9MF_0196991, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_0196991) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_0196991, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81PP9MF_0196991, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_0196991) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_0196991, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0196992) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionQ81PP9109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81PP9111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81PP9MF_01969104 .
?templateMotifSequenceMatchRegionQ81PP9109 faldo:begin ?templateMotifSequenceMatchBeginQ81PP9110 .
?templateMotifSequenceMatchBeginQ81PP9110 faldo:position ?templateMotifSequenceMatchBeginPositionQ81PP9105 ;
faldo:reference isoform:Q81PP9-1 .
?templateMotifSequenceProfileAlignmentOperationQ81PP9111 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01969115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81PP9MF_01969106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01969114 .
?targetMotifMatchRegionMatchBeginMF_01969114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01969107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01969115 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81PP9MF_01969104, 1, (STRLEN(?templateMotifCigarQ81PP9MF_01969104) - STRLEN(REPLACE(?templateMotifCigarQ81PP9MF_01969104, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionQ81PP9105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969106, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969106) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969106, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969106) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01969107) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionQ81PP9124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81PP9126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81PP9MF_01969119 .
?templateMotifSequenceMatchRegionQ81PP9124 faldo:begin ?templateMotifSequenceMatchBeginQ81PP9125 .
?templateMotifSequenceMatchBeginQ81PP9125 faldo:position ?templateMotifSequenceMatchBeginPositionQ81PP9120 ;
faldo:reference isoform:Q81PP9-1 .
?templateMotifSequenceProfileAlignmentOperationQ81PP9126 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01969130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81PP9MF_01969121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01969129 .
?targetMotifMatchRegionMatchBeginMF_01969129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01969122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01969130 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81PP9MF_01969119, 1, (STRLEN(?templateMotifCigarQ81PP9MF_01969119) - STRLEN(REPLACE(?templateMotifCigarQ81PP9MF_01969119, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ81PP9120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969121, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969121) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969121, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969121) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01969122) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionQ81PP9139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81PP9141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81PP9MF_01969134 .
?templateMotifSequenceMatchRegionQ81PP9139 faldo:begin ?templateMotifSequenceMatchBeginQ81PP9140 .
?templateMotifSequenceMatchBeginQ81PP9140 faldo:position ?templateMotifSequenceMatchBeginPositionQ81PP9135 ;
faldo:reference isoform:Q81PP9-1 .
?templateMotifSequenceProfileAlignmentOperationQ81PP9141 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01969145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81PP9MF_01969136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01969144 .
?targetMotifMatchRegionMatchBeginMF_01969144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01969137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01969145 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81PP9MF_01969134, 1, (STRLEN(?templateMotifCigarQ81PP9MF_01969134) - STRLEN(REPLACE(?templateMotifCigarQ81PP9MF_01969134, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ81PP9135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969136, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969136) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969136, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969136) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01969137) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionQ81PP9154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81PP9156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81PP9MF_01969149 .
?templateMotifSequenceMatchRegionQ81PP9154 faldo:begin ?templateMotifSequenceMatchBeginQ81PP9155 .
?templateMotifSequenceMatchBeginQ81PP9155 faldo:position ?templateMotifSequenceMatchBeginPositionQ81PP9150 ;
faldo:reference isoform:Q81PP9-1 .
?templateMotifSequenceProfileAlignmentOperationQ81PP9156 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01969160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81PP9MF_01969151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01969159 .
?targetMotifMatchRegionMatchBeginMF_01969159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01969152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01969160 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81PP9MF_01969149, 1, (STRLEN(?templateMotifCigarQ81PP9MF_01969149) - STRLEN(REPLACE(?templateMotifCigarQ81PP9MF_01969149, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionQ81PP9150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969151, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969151) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969151, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969151) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01969152) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionQ81PP9169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81PP9171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81PP9MF_01969164 .
?templateMotifSequenceMatchRegionQ81PP9169 faldo:begin ?templateMotifSequenceMatchBeginQ81PP9170 .
?templateMotifSequenceMatchBeginQ81PP9170 faldo:position ?templateMotifSequenceMatchBeginPositionQ81PP9165 ;
faldo:reference isoform:Q81PP9-1 .
?templateMotifSequenceProfileAlignmentOperationQ81PP9171 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01969175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81PP9MF_01969166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01969174 .
?targetMotifMatchRegionMatchBeginMF_01969174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01969167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01969175 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81PP9MF_01969164, 1, (STRLEN(?templateMotifCigarQ81PP9MF_01969164) - STRLEN(REPLACE(?templateMotifCigarQ81PP9MF_01969164, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ81PP9165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969166, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969166) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969166, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969166) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01969167) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionQ81PP9184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81PP9186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81PP9MF_01969179 .
?templateMotifSequenceMatchRegionQ81PP9184 faldo:begin ?templateMotifSequenceMatchBeginQ81PP9185 .
?templateMotifSequenceMatchBeginQ81PP9185 faldo:position ?templateMotifSequenceMatchBeginPositionQ81PP9180 ;
faldo:reference isoform:Q81PP9-1 .
?templateMotifSequenceProfileAlignmentOperationQ81PP9186 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01969190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81PP9MF_01969181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01969189 .
?targetMotifMatchRegionMatchBeginMF_01969189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01969182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01969190 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81PP9MF_01969179, 1, (STRLEN(?templateMotifCigarQ81PP9MF_01969179) - STRLEN(REPLACE(?templateMotifCigarQ81PP9MF_01969179, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ81PP9180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969181, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969181) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969181, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969181) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_01969182) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t193) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch198 faldo:location ?templateMotifSequenceMatchRegionQ81PP9199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ81PP9201 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ81PP9MF_01969194 .
?templateMotifSequenceMatchRegionQ81PP9199 faldo:begin ?templateMotifSequenceMatchBeginQ81PP9200 .
?templateMotifSequenceMatchBeginQ81PP9200 faldo:position ?templateMotifSequenceMatchBeginPositionQ81PP9195 ;
faldo:reference isoform:Q81PP9-1 .
?templateMotifSequenceProfileAlignmentOperationQ81PP9201 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
?targetMotifMatch202 faldo:location ?targetMotifMatchRegionMatch203 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01969205 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ81PP9MF_01969196 .
?targetMotifMatchRegionMatch203 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01969204 .
?targetMotifMatchRegionMatchBeginMF_01969204 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01969197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01969205 edam:has_input signature:MF_01969 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ81PP9MF_01969194, 1, (STRLEN(?templateMotifCigarQ81PP9MF_01969194) - STRLEN(REPLACE(?templateMotifCigarQ81PP9MF_01969194, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionQ81PP9195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969196, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969196) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ81PP9MF_01969196, 1, (STRLEN(?targetMotifMatchCigarQ81PP9MF_01969196) - STRLEN(REPLACE(?targetMotifMatchCigarQ81PP9MF_01969196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_01969197) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse69) .
FILTER (REGEX('[WF]', SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01969a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
}
"xsd:string |
