| http://purl.uniprot.org/unirules/MF_01975#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:694418 up:source unirule:MF_01975 .
_:694419 up:source unirule:MF_01975 .
_:694420 up:source unirule:MF_01975 .
_:694421 up:source unirule:MF_01975 .
_:694422 up:source unirule:MF_01975 .
_:694423 up:source unirule:MF_01975 .
_:694424 up:source unirule:MF_01975 .
_:694425 up:source unirule:MF_01975 .
_:694426 up:source unirule:MF_01975 .
_:694427 up:source unirule:MF_01975 .
_:694428 up:source unirule:MF_01975 .
_:694429 up:source unirule:MF_01975 .
_:694430 up:source unirule:MF_01975 .
_:694431 up:source unirule:MF_01975 .
_:694432 up:source unirule:MF_01975 .
_:694433 up:source unirule:MF_01975 .
_:694434 up:source unirule:MF_01975 .
_:694435 up:source unirule:MF_01975 .
_:694436 up:source unirule:MF_01975 .
_:694437 up:source unirule:MF_01975 .
_:694438 up:source unirule:MF_01975 .
_:694439 up:source unirule:MF_01975 .
_:694440 up:source unirule:MF_01975 .
_:694441 up:source unirule:MF_01975 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004239 ,
GO:0046872 ,
GO:0070006 ,
keyword:31 ,
keyword:378 ,
keyword:479 ,
keyword:645 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.11.18' ;
up:fullName 'Methionine aminopeptidase' ;
up:shortName 'MAP' ,
'MetAP' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Peptidase M' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'map' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 up:cofactor chebi:29033 ,
chebi:29035 ,
chebi:29105 ,
chebi:48828 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily.' .
?pfs9 up:annotation ?annotation10 ,
?annotation16 ,
?annotation22 ,
?annotation28 ,
?annotation34 ,
?annotation40 ,
?annotation46 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:60240 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:60240 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:60240 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:60240 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:60240 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:60240 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:60240 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf ?molecule57 .
?molecule57 rdfs:label 'substrate' .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf ?molecule65 .
?molecule65 rdfs:label 'substrate' .
_:694442 a rdf:Statement ;
up:attribution _:694418 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:694443 a rdf:Statement ;
up:attribution _:694419 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:694444 a rdf:Statement ;
up:attribution _:694420 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:694445 a rdf:Statement ;
up:attribution _:694421 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:694446 a rdf:Statement ;
up:attribution _:694422 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:694447 a rdf:Statement ;
up:attribution _:694423 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:694448 a rdf:Statement ;
up:attribution _:694424 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:694449 a rdf:Statement ;
up:attribution _:694425 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:694450 a rdf:Statement ;
up:attribution _:694426 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:31 .
_:694451 a rdf:Statement ;
up:attribution _:694427 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:694452 a rdf:Statement ;
up:attribution _:694428 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:694453 a rdf:Statement ;
up:attribution _:694429 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:694454 a rdf:Statement ;
up:attribution _:694430 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:694455 a rdf:Statement ;
up:attribution _:694431 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070006 .
_:694456 a rdf:Statement ;
up:attribution _:694432 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004239 .
_:694457 a rdf:Statement ;
up:source unirule:MF_01975 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:694458 a rdf:Statement ;
up:attribution _:694433 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:694459 a rdf:Statement ;
up:source unirule:MF_01975 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:694460 a rdf:Statement ;
up:attribution _:694434 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:694461 a rdf:Statement ;
up:source unirule:MF_01975 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:694462 a rdf:Statement ;
up:attribution _:694435 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:694463 a rdf:Statement ;
up:source unirule:MF_01975 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:694464 a rdf:Statement ;
up:attribution _:694436 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:694465 a rdf:Statement ;
up:source unirule:MF_01975 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:694466 a rdf:Statement ;
up:attribution _:694437 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:694467 a rdf:Statement ;
up:source unirule:MF_01975 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:694468 a rdf:Statement ;
up:attribution _:694438 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:694469 a rdf:Statement ;
up:source unirule:MF_01975 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:694470 a rdf:Statement ;
up:attribution _:694439 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:694471 a rdf:Statement ;
up:source unirule:MF_01975 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:694472 a rdf:Statement ;
up:attribution _:694440 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:694473 a rdf:Statement ;
up:source unirule:MF_01975 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:694474 a rdf:Statement ;
up:attribution _:694441 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01975
#Rule MF_01975 Created by:? on:2013-06-05 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01975 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01975a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01975a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01975a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01975a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01975a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01975a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01975a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP5621873 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5621875 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56218MF_0197568 .
?templateMotifSequenceMatchRegionP5621873 faldo:begin ?templateMotifSequenceMatchBeginP5621874 .
?templateMotifSequenceMatchBeginP5621874 faldo:position ?templateMotifSequenceMatchBeginPositionP5621869 ;
faldo:reference isoform:P56218-1 .
?templateMotifSequenceProfileAlignmentOperationP5621875 edam:has_input signature:MF_01975 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0197579 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56218MF_0197570 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0197578 .
?targetMotifMatchRegionMatchBeginMF_0197578 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0197571 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0197579 edam:has_input signature:MF_01975 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56218MF_0197568, 1, (STRLEN(?templateMotifCigarP56218MF_0197568) - STRLEN(REPLACE(?templateMotifCigarP56218MF_0197568, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP5621869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0197571) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56218MF_0197568, 1, (STRLEN(?templateMotifCigarP56218MF_0197568) - STRLEN(REPLACE(?templateMotifCigarP56218MF_0197568, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP5621869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0197571) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56218MF_0197568, 1, (STRLEN(?templateMotifCigarP56218MF_0197568) - STRLEN(REPLACE(?templateMotifCigarP56218MF_0197568, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP5621869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0197571) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56218MF_0197568, 1, (STRLEN(?templateMotifCigarP56218MF_0197568) - STRLEN(REPLACE(?templateMotifCigarP56218MF_0197568, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP5621869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0197571) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56218MF_0197568, 1, (STRLEN(?templateMotifCigarP56218MF_0197568) - STRLEN(REPLACE(?templateMotifCigarP56218MF_0197568, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP5621869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0197571) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56218MF_0197568, 1, (STRLEN(?templateMotifCigarP56218MF_0197568) - STRLEN(REPLACE(?templateMotifCigarP56218MF_0197568, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionP5621869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0197571) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56218MF_0197568, 1, (STRLEN(?templateMotifCigarP56218MF_0197568) - STRLEN(REPLACE(?templateMotifCigarP56218MF_0197568, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionP5621869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56218MF_0197570, 1, (STRLEN(?targetMotifMatchCigarP56218MF_0197570) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_0197570, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0197571) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'E')) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP56218106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56218108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56218MF_01975101 .
?templateMotifSequenceMatchRegionP56218106 faldo:begin ?templateMotifSequenceMatchBeginP56218107 .
?templateMotifSequenceMatchBeginP56218107 faldo:position ?templateMotifSequenceMatchBeginPositionP56218102 ;
faldo:reference isoform:P56218-1 .
?templateMotifSequenceProfileAlignmentOperationP56218108 edam:has_input signature:MF_01975 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01975112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56218MF_01975103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01975111 .
?targetMotifMatchRegionMatchBeginMF_01975111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01975104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01975112 edam:has_input signature:MF_01975 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56218MF_01975101, 1, (STRLEN(?templateMotifCigarP56218MF_01975101) - STRLEN(REPLACE(?templateMotifCigarP56218MF_01975101, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionP56218102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56218MF_01975103, 1, (STRLEN(?targetMotifMatchCigarP56218MF_01975103) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_01975103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56218MF_01975103, 1, (STRLEN(?targetMotifMatchCigarP56218MF_01975103) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_01975103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01975104) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs2t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01975a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP56218121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56218123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56218MF_01975116 .
?templateMotifSequenceMatchRegionP56218121 faldo:begin ?templateMotifSequenceMatchBeginP56218122 .
?templateMotifSequenceMatchBeginP56218122 faldo:position ?templateMotifSequenceMatchBeginPositionP56218117 ;
faldo:reference isoform:P56218-1 .
?templateMotifSequenceProfileAlignmentOperationP56218123 edam:has_input signature:MF_01975 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01975127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56218MF_01975118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01975126 .
?targetMotifMatchRegionMatchBeginMF_01975126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01975119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01975127 edam:has_input signature:MF_01975 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56218MF_01975116, 1, (STRLEN(?templateMotifCigarP56218MF_01975116) - STRLEN(REPLACE(?templateMotifCigarP56218MF_01975116, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP56218117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56218MF_01975118, 1, (STRLEN(?targetMotifMatchCigarP56218MF_01975118) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_01975118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56218MF_01975118, 1, (STRLEN(?targetMotifMatchCigarP56218MF_01975118) - STRLEN(REPLACE(?targetMotifMatchCigarP56218MF_01975118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01975119) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs2t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01975a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
}
"xsd:string |
