| http://purl.uniprot.org/unirules/MF_02008#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:706929 up:source unirule:MF_02008 .
_:706930 up:source unirule:MF_02008 .
_:706931 up:source unirule:MF_02008 .
_:706932 up:source unirule:MF_02008 .
_:706933 up:source unirule:MF_02008 .
_:706934 up:source unirule:MF_02008 .
_:706935 up:source unirule:MF_02008 .
_:706936 up:source unirule:MF_02008 .
_:706937 up:source unirule:MF_02008 .
_:706938 up:source unirule:MF_02008 .
_:706939 up:source unirule:MF_02008 .
_:706940 up:source unirule:MF_02008 .
_:706941 up:source unirule:MF_02008 .
_:706942 up:source unirule:MF_02008 .
_:706943 up:source unirule:MF_02008 .
_:706944 up:source unirule:MF_02008 .
_:706945 up:source unirule:MF_02008 .
_:706946 up:source unirule:MF_02008 .
_:706947 up:source unirule:MF_02008 .
_:706948 up:source unirule:MF_02008 .
_:706949 up:source unirule:MF_02008 .
_:706950 up:source unirule:MF_02008 .
_:706951 up:source unirule:MF_02008 .
_:706952 up:source unirule:MF_02008 .
_:706953 up:source unirule:MF_02008 .
_:706954 up:source unirule:MF_02008 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0004831 ,
GO:0005524 ,
GO:0005737 ,
GO:0006437 ,
keyword:30 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.1.1.1' ;
up:fullName 'Tyrosine--tRNA ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Tyrosyl-tRNA synthetase' ;
up:shortName 'TyrRS' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'tyrS' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 3 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'KMSKS' region" .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'HIGH' region" .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:58315 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:58315 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:58315 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:58315 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:58315 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:30616 .
_:706955 a rdf:Statement ;
up:attribution _:706929 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:706956 a rdf:Statement ;
up:attribution _:706930 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:706957 a rdf:Statement ;
up:attribution _:706931 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:706958 a rdf:Statement ;
up:attribution _:706932 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:706959 a rdf:Statement ;
up:attribution _:706933 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:706960 a rdf:Statement ;
up:attribution _:706934 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:706961 a rdf:Statement ;
up:attribution _:706935 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:706962 a rdf:Statement ;
up:attribution _:706936 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:706963 a rdf:Statement ;
up:attribution _:706937 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:706964 a rdf:Statement ;
up:attribution _:706938 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:706965 a rdf:Statement ;
up:attribution _:706939 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:706966 a rdf:Statement ;
up:attribution _:706940 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:706967 a rdf:Statement ;
up:attribution _:706941 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:706968 a rdf:Statement ;
up:attribution _:706942 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:706969 a rdf:Statement ;
up:attribution _:706943 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004831 .
_:706970 a rdf:Statement ;
up:attribution _:706944 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:706971 a rdf:Statement ;
up:attribution _:706945 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006437 .
_:706972 a rdf:Statement ;
up:attribution _:706946 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:706973 a rdf:Statement ;
up:source unirule:MF_02008 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:706974 a rdf:Statement ;
up:attribution _:706947 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:706975 a rdf:Statement ;
up:source unirule:MF_02008 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:706976 a rdf:Statement ;
up:attribution _:706948 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:706977 a rdf:Statement ;
up:source unirule:MF_02008 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:706978 a rdf:Statement ;
up:attribution _:706949 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:706979 a rdf:Statement ;
up:source unirule:MF_02008 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:706980 a rdf:Statement ;
up:attribution _:706950 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:706981 a rdf:Statement ;
up:source unirule:MF_02008 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:706982 a rdf:Statement ;
up:attribution _:706951 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:706983 a rdf:Statement ;
up:source unirule:MF_02008 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:706984 a rdf:Statement ;
up:attribution _:706952 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:706985 a rdf:Statement ;
up:source unirule:MF_02008 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:706986 a rdf:Statement ;
up:attribution _:706953 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:706987 a rdf:Statement ;
up:source unirule:MF_02008 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:706988 a rdf:Statement ;
up:attribution _:706954 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02008
#Rule MF_02008 Created by:? on:2006-05-30 Modified by:Catherine Rivoire on:2024-10-08
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02008 .
?thisOrganism rdfs:subClassOf+ taxon:3366610 .
BIND(URI(CONCAT(STR(?this), '#MF_02008a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionQ5783469 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5783471 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57834MF_0200864 .
?templateMotifSequenceMatchRegionQ5783469 faldo:begin ?templateMotifSequenceMatchBeginQ5783470 .
?templateMotifSequenceMatchBeginQ5783470 faldo:position ?templateMotifSequenceMatchBeginPositionQ5783465 ;
faldo:reference isoform:Q57834-1 .
?templateMotifSequenceProfileAlignmentOperationQ5783471 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0200875 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57834MF_0200866 .
?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0200874 .
?targetMotifMatchRegionMatchBeginMF_0200874 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0200867 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0200875 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57834MF_0200864, 1, (STRLEN(?templateMotifCigarQ57834MF_0200864) - STRLEN(REPLACE(?templateMotifCigarQ57834MF_0200864, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionQ5783465) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57834MF_0200866, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_0200866) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_0200866, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57834MF_0200866, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_0200866) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_0200866, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0200867) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57834MF_0200864, 1, (STRLEN(?templateMotifCigarQ57834MF_0200864) - STRLEN(REPLACE(?templateMotifCigarQ57834MF_0200864, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionQ5783465) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57834MF_0200866, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_0200866) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_0200866, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57834MF_0200866, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_0200866) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_0200866, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0200867) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER (REGEX('KM[SA]SS', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionQ5783486 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5783488 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57834MF_0200881 .
?templateMotifSequenceMatchRegionQ5783486 faldo:begin ?templateMotifSequenceMatchBeginQ5783487 .
?templateMotifSequenceMatchBeginQ5783487 faldo:position ?templateMotifSequenceMatchBeginPositionQ5783482 ;
faldo:reference isoform:Q57834-1 .
?templateMotifSequenceProfileAlignmentOperationQ5783488 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0200892 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57834MF_0200883 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0200891 .
?targetMotifMatchRegionMatchBeginMF_0200891 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0200884 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0200892 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57834MF_0200881, 1, (STRLEN(?templateMotifCigarQ57834MF_0200881) - STRLEN(REPLACE(?templateMotifCigarQ57834MF_0200881, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionQ5783482) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57834MF_0200883, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_0200883) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_0200883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57834MF_0200883, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_0200883) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_0200883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0200884) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57834MF_0200881, 1, (STRLEN(?templateMotifCigarQ57834MF_0200881) - STRLEN(REPLACE(?templateMotifCigarQ57834MF_0200881, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionQ5783482) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57834MF_0200883, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_0200883) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_0200883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57834MF_0200883, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_0200883) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_0200883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0200884) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs2t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER (REGEX('P[ST]G[KERV][IVML]H[LMI]GH', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionQ57834103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57834105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57834MF_0200898 .
?templateMotifSequenceMatchRegionQ57834103 faldo:begin ?templateMotifSequenceMatchBeginQ57834104 .
?templateMotifSequenceMatchBeginQ57834104 faldo:position ?templateMotifSequenceMatchBeginPositionQ5783499 ;
faldo:reference isoform:Q57834-1 .
?templateMotifSequenceProfileAlignmentOperationQ57834105 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02008109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57834MF_02008100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02008108 .
?targetMotifMatchRegionMatchBeginMF_02008108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02008101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02008109 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57834MF_0200898, 1, (STRLEN(?templateMotifCigarQ57834MF_0200898) - STRLEN(REPLACE(?templateMotifCigarQ57834MF_0200898, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionQ5783499) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57834MF_02008100, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008100) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57834MF_02008100, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008100) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_02008101) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs2t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionQ57834118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57834120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57834MF_02008113 .
?templateMotifSequenceMatchRegionQ57834118 faldo:begin ?templateMotifSequenceMatchBeginQ57834119 .
?templateMotifSequenceMatchBeginQ57834119 faldo:position ?templateMotifSequenceMatchBeginPositionQ57834114 ;
faldo:reference isoform:Q57834-1 .
?templateMotifSequenceProfileAlignmentOperationQ57834120 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02008124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57834MF_02008115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02008123 .
?targetMotifMatchRegionMatchBeginMF_02008123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02008116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02008124 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57834MF_02008113, 1, (STRLEN(?templateMotifCigarQ57834MF_02008113) - STRLEN(REPLACE(?templateMotifCigarQ57834MF_02008113, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionQ57834114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57834MF_02008115, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008115) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57834MF_02008115, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008115) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_02008116) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs2t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionQ57834133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57834135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57834MF_02008128 .
?templateMotifSequenceMatchRegionQ57834133 faldo:begin ?templateMotifSequenceMatchBeginQ57834134 .
?templateMotifSequenceMatchBeginQ57834134 faldo:position ?templateMotifSequenceMatchBeginPositionQ57834129 ;
faldo:reference isoform:Q57834-1 .
?templateMotifSequenceProfileAlignmentOperationQ57834135 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02008139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57834MF_02008130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02008138 .
?targetMotifMatchRegionMatchBeginMF_02008138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02008131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02008139 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57834MF_02008128, 1, (STRLEN(?templateMotifCigarQ57834MF_02008128) - STRLEN(REPLACE(?templateMotifCigarQ57834MF_02008128, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionQ57834129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57834MF_02008130, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008130) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57834MF_02008130, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008130) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_02008131) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionQ57834148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57834150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57834MF_02008143 .
?templateMotifSequenceMatchRegionQ57834148 faldo:begin ?templateMotifSequenceMatchBeginQ57834149 .
?templateMotifSequenceMatchBeginQ57834149 faldo:position ?templateMotifSequenceMatchBeginPositionQ57834144 ;
faldo:reference isoform:Q57834-1 .
?templateMotifSequenceProfileAlignmentOperationQ57834150 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02008154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57834MF_02008145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02008153 .
?targetMotifMatchRegionMatchBeginMF_02008153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02008146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02008154 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57834MF_02008143, 1, (STRLEN(?templateMotifCigarQ57834MF_02008143) - STRLEN(REPLACE(?templateMotifCigarQ57834MF_02008143, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionQ57834144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57834MF_02008145, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008145) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57834MF_02008145, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008145) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_02008146) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionQ57834163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57834165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57834MF_02008158 .
?templateMotifSequenceMatchRegionQ57834163 faldo:begin ?templateMotifSequenceMatchBeginQ57834164 .
?templateMotifSequenceMatchBeginQ57834164 faldo:position ?templateMotifSequenceMatchBeginPositionQ57834159 ;
faldo:reference isoform:Q57834-1 .
?templateMotifSequenceProfileAlignmentOperationQ57834165 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02008169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57834MF_02008160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02008168 .
?targetMotifMatchRegionMatchBeginMF_02008168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02008161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02008169 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57834MF_02008158, 1, (STRLEN(?templateMotifCigarQ57834MF_02008158) - STRLEN(REPLACE(?templateMotifCigarQ57834MF_02008158, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ57834159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57834MF_02008160, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008160) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57834MF_02008160, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008160) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_02008161) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionQ57834178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57834180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57834MF_02008173 .
?templateMotifSequenceMatchRegionQ57834178 faldo:begin ?templateMotifSequenceMatchBeginQ57834179 .
?templateMotifSequenceMatchBeginQ57834179 faldo:position ?templateMotifSequenceMatchBeginPositionQ57834174 ;
faldo:reference isoform:Q57834-1 .
?templateMotifSequenceProfileAlignmentOperationQ57834180 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02008184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57834MF_02008175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02008183 .
?targetMotifMatchRegionMatchBeginMF_02008183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02008176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02008184 edam:has_input signature:MF_02008 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57834MF_02008173, 1, (STRLEN(?templateMotifCigarQ57834MF_02008173) - STRLEN(REPLACE(?templateMotifCigarQ57834MF_02008173, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionQ57834174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57834MF_02008175, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008175) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57834MF_02008175, 1, (STRLEN(?targetMotifMatchCigarQ57834MF_02008175) - STRLEN(REPLACE(?targetMotifMatchCigarQ57834MF_02008175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_02008176) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs3t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_02008a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
}
"xsd:string |
