| http://purl.uniprot.org/unirules/MF_02095#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:743943 up:source unirule:MF_02095 .
_:743944 up:source unirule:MF_02095 .
_:743945 up:source unirule:MF_02095 .
_:743946 up:source unirule:MF_02095 .
_:743947 up:source unirule:MF_02095 .
_:743948 up:source unirule:MF_02095 .
_:743949 up:source unirule:MF_02095 .
_:743950 up:source unirule:MF_02095 .
_:743951 up:source unirule:MF_02095 .
_:743952 up:source unirule:MF_02095 .
_:743953 up:source unirule:MF_02095 .
_:743954 up:source unirule:MF_02095 .
_:743955 up:source unirule:MF_02095 .
_:743956 up:source unirule:MF_02095 .
_:743957 up:source unirule:MF_02095 .
_:743958 up:source unirule:MF_02095 .
_:743959 up:source unirule:MF_02095 .
_:743960 up:source unirule:MF_02095 .
_:743961 up:source unirule:MF_02095 .
_:743962 up:source unirule:MF_02095 .
_:743963 up:source unirule:MF_02095 .
_:743964 up:source unirule:MF_02095 .
_:743965 up:source unirule:MF_02095 .
_:743966 up:source unirule:MF_02095 .
_:743967 up:source unirule:MF_02095 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000287 ,
GO:0008441 ,
keyword:1003 ,
keyword:378 ,
keyword:460 ,
keyword:472 ,
keyword:479 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.3.7' ;
up:fullName "3'(2'),5'-bisphosphate nucleotidase CysQ" ;
rdf:type up:Structured_Name .
?name1 up:fullName "3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase" ;
rdf:type up:Structured_Name .
?name2 up:fullName "3'-phosphoadenosine 5'-phosphate phosphatase" ;
up:shortName 'PAP phosphatase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'cysQ' .
?annotation4 a up:Function_Annotation ;
rdfs:comment "Converts adenosine-3',5'-bisphosphate (PAP) to AMP." .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the inositol monophosphatase superfamily. CysQ family.' .
?case9 up:classifiedWith keyword:997 .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf ?molecule16 .
?molecule16 rdfs:label 'substrate' .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:18420 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:18420 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:18420 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:18420 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:18420 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:18420 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf ?molecule66 .
?molecule66 rdfs:label 'substrate' .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf ?molecule74 .
?molecule74 rdfs:label 'substrate' .
_:743968 a rdf:Statement ;
up:attribution _:743943 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:743969 a rdf:Statement ;
up:attribution _:743944 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:743970 a rdf:Statement ;
up:attribution _:743945 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:743971 a rdf:Statement ;
up:attribution _:743946 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:743972 a rdf:Statement ;
up:attribution _:743947 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:743973 a rdf:Statement ;
up:attribution _:743948 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:743974 a rdf:Statement ;
up:attribution _:743949 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:743975 a rdf:Statement ;
up:attribution _:743950 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:743976 a rdf:Statement ;
up:attribution _:743951 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:743977 a rdf:Statement ;
up:attribution _:743952 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:743978 a rdf:Statement ;
up:attribution _:743953 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:743979 a rdf:Statement ;
up:attribution _:743954 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:743980 a rdf:Statement ;
up:attribution _:743955 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:743981 a rdf:Statement ;
up:attribution _:743956 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008441 .
_:743982 a rdf:Statement ;
up:attribution _:743957 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:743983 a rdf:Statement ;
up:attribution _:743958 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:743984 a rdf:Statement ;
up:source unirule:MF_02095 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:743985 a rdf:Statement ;
up:attribution _:743959 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:743986 a rdf:Statement ;
up:source unirule:MF_02095 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:743987 a rdf:Statement ;
up:attribution _:743960 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:743988 a rdf:Statement ;
up:source unirule:MF_02095 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:743989 a rdf:Statement ;
up:attribution _:743961 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:743990 a rdf:Statement ;
up:source unirule:MF_02095 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:743991 a rdf:Statement ;
up:attribution _:743962 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:743992 a rdf:Statement ;
up:source unirule:MF_02095 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:743993 a rdf:Statement ;
up:attribution _:743963 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:743994 a rdf:Statement ;
up:source unirule:MF_02095 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:743995 a rdf:Statement ;
up:attribution _:743964 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:743996 a rdf:Statement ;
up:source unirule:MF_02095 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:743997 a rdf:Statement ;
up:attribution _:743965 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:743998 a rdf:Statement ;
up:source unirule:MF_02095 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:743999 a rdf:Statement ;
up:attribution _:743966 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:744000 a rdf:Statement ;
up:source unirule:MF_02095 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:744001 a rdf:Statement ;
up:attribution _:743967 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02095
#Rule MF_02095 Created by:? on:2017-10-13 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02095 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02095a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP2225582 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2225584 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22255MF_0209577 .
?templateMotifSequenceMatchRegionP2225582 faldo:begin ?templateMotifSequenceMatchBeginP2225583 .
?templateMotifSequenceMatchBeginP2225583 faldo:position ?templateMotifSequenceMatchBeginPositionP2225578 ;
faldo:reference isoform:P22255-1 .
?templateMotifSequenceProfileAlignmentOperationP2225584 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0209588 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22255MF_0209579 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0209587 .
?targetMotifMatchRegionMatchBeginMF_0209587 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0209580 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0209588 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22255MF_0209577, 1, (STRLEN(?templateMotifCigarP22255MF_0209577) - STRLEN(REPLACE(?templateMotifCigarP22255MF_0209577, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP2225578) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22255MF_0209579, 1, (STRLEN(?targetMotifMatchCigarP22255MF_0209579) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_0209579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22255MF_0209579, 1, (STRLEN(?targetMotifMatchCigarP22255MF_0209579) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_0209579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0209580) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22255MF_0209577, 1, (STRLEN(?templateMotifCigarP22255MF_0209577) - STRLEN(REPLACE(?templateMotifCigarP22255MF_0209577, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP2225578) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22255MF_0209579, 1, (STRLEN(?targetMotifMatchCigarP22255MF_0209579) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_0209579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22255MF_0209579, 1, (STRLEN(?targetMotifMatchCigarP22255MF_0209579) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_0209579, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0209580) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse14) .
FILTER (REGEX('[LIV]DGT', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP2225599 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22255101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22255MF_0209594 .
?templateMotifSequenceMatchRegionP2225599 faldo:begin ?templateMotifSequenceMatchBeginP22255100 .
?templateMotifSequenceMatchBeginP22255100 faldo:position ?templateMotifSequenceMatchBeginPositionP2225595 ;
faldo:reference isoform:P22255-1 .
?templateMotifSequenceProfileAlignmentOperationP22255101 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02095105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22255MF_0209596 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02095104 .
?targetMotifMatchRegionMatchBeginMF_02095104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0209597 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02095105 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22255MF_0209594, 1, (STRLEN(?templateMotifCigarP22255MF_0209594) - STRLEN(REPLACE(?templateMotifCigarP22255MF_0209594, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP2225595) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22255MF_0209596, 1, (STRLEN(?targetMotifMatchCigarP22255MF_0209596) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_0209596, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22255MF_0209596, 1, (STRLEN(?targetMotifMatchCigarP22255MF_0209596) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_0209596, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0209597) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP22255114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22255116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22255MF_02095109 .
?templateMotifSequenceMatchRegionP22255114 faldo:begin ?templateMotifSequenceMatchBeginP22255115 .
?templateMotifSequenceMatchBeginP22255115 faldo:position ?templateMotifSequenceMatchBeginPositionP22255110 ;
faldo:reference isoform:P22255-1 .
?templateMotifSequenceProfileAlignmentOperationP22255116 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02095120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22255MF_02095111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02095119 .
?targetMotifMatchRegionMatchBeginMF_02095119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02095112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02095120 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22255MF_02095109, 1, (STRLEN(?templateMotifCigarP22255MF_02095109) - STRLEN(REPLACE(?templateMotifCigarP22255MF_02095109, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP22255110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22255MF_02095111, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095111) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22255MF_02095111, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095111) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_02095112) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP22255129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22255131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22255MF_02095124 .
?templateMotifSequenceMatchRegionP22255129 faldo:begin ?templateMotifSequenceMatchBeginP22255130 .
?templateMotifSequenceMatchBeginP22255130 faldo:position ?templateMotifSequenceMatchBeginPositionP22255125 ;
faldo:reference isoform:P22255-1 .
?templateMotifSequenceProfileAlignmentOperationP22255131 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02095135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22255MF_02095126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02095134 .
?targetMotifMatchRegionMatchBeginMF_02095134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02095127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02095135 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22255MF_02095124, 1, (STRLEN(?templateMotifCigarP22255MF_02095124) - STRLEN(REPLACE(?templateMotifCigarP22255MF_02095124, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP22255125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22255MF_02095126, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095126) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22255MF_02095126, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095126) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_02095127) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP22255144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22255146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22255MF_02095139 .
?templateMotifSequenceMatchRegionP22255144 faldo:begin ?templateMotifSequenceMatchBeginP22255145 .
?templateMotifSequenceMatchBeginP22255145 faldo:position ?templateMotifSequenceMatchBeginPositionP22255140 ;
faldo:reference isoform:P22255-1 .
?templateMotifSequenceProfileAlignmentOperationP22255146 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02095150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22255MF_02095141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02095149 .
?targetMotifMatchRegionMatchBeginMF_02095149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02095142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02095150 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22255MF_02095139, 1, (STRLEN(?templateMotifCigarP22255MF_02095139) - STRLEN(REPLACE(?templateMotifCigarP22255MF_02095139, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP22255140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22255MF_02095141, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095141) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22255MF_02095141, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095141) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_02095142) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER (REGEX('[LIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP22255159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22255161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22255MF_02095154 .
?templateMotifSequenceMatchRegionP22255159 faldo:begin ?templateMotifSequenceMatchBeginP22255160 .
?templateMotifSequenceMatchBeginP22255160 faldo:position ?templateMotifSequenceMatchBeginPositionP22255155 ;
faldo:reference isoform:P22255-1 .
?templateMotifSequenceProfileAlignmentOperationP22255161 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02095165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22255MF_02095156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02095164 .
?targetMotifMatchRegionMatchBeginMF_02095164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02095157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02095165 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22255MF_02095154, 1, (STRLEN(?templateMotifCigarP22255MF_02095154) - STRLEN(REPLACE(?templateMotifCigarP22255MF_02095154, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionP22255155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22255MF_02095156, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095156) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22255MF_02095156, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095156) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_02095157) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP22255174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22255176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22255MF_02095169 .
?templateMotifSequenceMatchRegionP22255174 faldo:begin ?templateMotifSequenceMatchBeginP22255175 .
?templateMotifSequenceMatchBeginP22255175 faldo:position ?templateMotifSequenceMatchBeginPositionP22255170 ;
faldo:reference isoform:P22255-1 .
?templateMotifSequenceProfileAlignmentOperationP22255176 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02095180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22255MF_02095171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02095179 .
?targetMotifMatchRegionMatchBeginMF_02095179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02095172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02095180 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22255MF_02095169, 1, (STRLEN(?templateMotifCigarP22255MF_02095169) - STRLEN(REPLACE(?templateMotifCigarP22255MF_02095169, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP22255170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22255MF_02095171, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095171) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22255MF_02095171, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095171) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_02095172) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP22255189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22255191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22255MF_02095184 .
?templateMotifSequenceMatchRegionP22255189 faldo:begin ?templateMotifSequenceMatchBeginP22255190 .
?templateMotifSequenceMatchBeginP22255190 faldo:position ?templateMotifSequenceMatchBeginPositionP22255185 ;
faldo:reference isoform:P22255-1 .
?templateMotifSequenceProfileAlignmentOperationP22255191 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02095195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22255MF_02095186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02095194 .
?targetMotifMatchRegionMatchBeginMF_02095194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02095187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02095195 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22255MF_02095184, 1, (STRLEN(?templateMotifCigarP22255MF_02095184) - STRLEN(REPLACE(?templateMotifCigarP22255MF_02095184, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP22255185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22255MF_02095186, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095186) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22255MF_02095186, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095186) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_02095187) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP22255204 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22255206 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22255MF_02095199 .
?templateMotifSequenceMatchRegionP22255204 faldo:begin ?templateMotifSequenceMatchBeginP22255205 .
?templateMotifSequenceMatchBeginP22255205 faldo:position ?templateMotifSequenceMatchBeginPositionP22255200 ;
faldo:reference isoform:P22255-1 .
?templateMotifSequenceProfileAlignmentOperationP22255206 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02095210 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22255MF_02095201 .
?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02095209 .
?targetMotifMatchRegionMatchBeginMF_02095209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02095202 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02095210 edam:has_input signature:MF_02095 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22255MF_02095199, 1, (STRLEN(?templateMotifCigarP22255MF_02095199) - STRLEN(REPLACE(?templateMotifCigarP22255MF_02095199, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP22255200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22255MF_02095201, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095201) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22255MF_02095201, 1, (STRLEN(?targetMotifMatchCigarP22255MF_02095201) - STRLEN(REPLACE(?targetMotifMatchCigarP22255MF_02095201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_02095202) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02095a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this a up:Protein .
{
{
?this up:proteome .
} UNION {
?this up:proteome ?p214 .
?p214 skos:narrower .
}
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
}
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p215 .
?p215 skos:narrower .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1224 .
})) .
} UNION {
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p216 .
?p216 skos:narrower .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1224 .
})) .
}
BIND(?this AS ?case10) .
}
}
"xsd:string |
