| http://purl.uniprot.org/unirules/MF_02097#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:744716 up:source unirule:MF_02097 .
_:744717 up:source unirule:MF_02097 .
_:744718 up:source unirule:MF_02097 .
_:744719 up:source unirule:MF_02097 .
_:744720 up:source unirule:MF_02097 .
_:744721 up:source unirule:MF_02097 .
_:744722 up:source unirule:MF_02097 .
_:744723 up:source unirule:MF_02097 .
_:744724 up:source unirule:MF_02097 .
_:744725 up:source unirule:MF_02097 .
_:744726 up:source unirule:MF_02097 .
_:744727 up:source unirule:MF_02097 .
_:744728 up:source unirule:MF_02097 .
_:744729 up:source unirule:MF_02097 .
_:744730 up:source unirule:MF_02097 .
_:744731 up:source unirule:MF_02097 .
_:744732 up:source unirule:MF_02097 .
_:744733 up:source unirule:MF_02097 .
_:744734 up:source unirule:MF_02097 .
_:744735 up:source unirule:MF_02097 .
_:744736 up:source unirule:MF_02097 .
_:744737 up:source unirule:MF_02097 .
_:744738 up:source unirule:MF_02097 .
_:744739 up:source unirule:MF_02097 .
_:744740 up:source unirule:MF_02097 .
_:744741 up:source unirule:MF_02097 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0009437 ,
GO:0016709 ,
keyword:408 ,
keyword:479 ,
keyword:520 ,
keyword:521 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.14.13.239' ;
up:fullName 'Carnitine monooxygenase oxygenase subunit' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Carnitine monooxygenase alpha subunit' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Converts carnitine to trimethylamine and malic semialdehyde.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:24875 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Fe cation per subunit' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine metabolism; carnitine metabolism.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Composed of an oxygenase subunit and a reductase subunit.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the bacterial ring-hydroxylating dioxygenase alpha subunit family. CntA subfamily.' .
?case11 up:classifiedWith GO:0051537 ,
keyword:1 ,
keyword:411 .
?pfs12 up:annotation ?annotation13 ,
?annotation19 ,
?annotation25 ,
?annotation31 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:190135 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:190135 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:190135 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:190135 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:24875 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:24875 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:24875 .
_:744742 a rdf:Statement ;
up:attribution _:744716 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:744743 a rdf:Statement ;
up:attribution _:744717 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:744744 a rdf:Statement ;
up:attribution _:744718 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:744745 a rdf:Statement ;
up:attribution _:744719 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:744746 a rdf:Statement ;
up:attribution _:744720 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:744747 a rdf:Statement ;
up:attribution _:744721 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:744748 a rdf:Statement ;
up:attribution _:744722 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:744749 a rdf:Statement ;
up:attribution _:744723 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:744750 a rdf:Statement ;
up:attribution _:744724 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:744751 a rdf:Statement ;
up:attribution _:744725 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:744752 a rdf:Statement ;
up:attribution _:744726 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:744753 a rdf:Statement ;
up:attribution _:744727 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:744754 a rdf:Statement ;
up:attribution _:744728 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:744755 a rdf:Statement ;
up:attribution _:744729 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:744756 a rdf:Statement ;
up:attribution _:744730 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016709 .
_:744757 a rdf:Statement ;
up:attribution _:744731 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009437 .
_:744758 a rdf:Statement ;
up:attribution _:744732 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1 .
_:744759 a rdf:Statement ;
up:attribution _:744733 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:744760 a rdf:Statement ;
up:attribution _:744734 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051537 .
_:744761 a rdf:Statement ;
up:source unirule:MF_02097 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:744762 a rdf:Statement ;
up:attribution _:744735 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:744763 a rdf:Statement ;
up:source unirule:MF_02097 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:744764 a rdf:Statement ;
up:attribution _:744736 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:744765 a rdf:Statement ;
up:source unirule:MF_02097 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:744766 a rdf:Statement ;
up:attribution _:744737 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:744767 a rdf:Statement ;
up:source unirule:MF_02097 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:744768 a rdf:Statement ;
up:attribution _:744738 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:744769 a rdf:Statement ;
up:source unirule:MF_02097 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:744770 a rdf:Statement ;
up:attribution _:744739 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:744771 a rdf:Statement ;
up:source unirule:MF_02097 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:744772 a rdf:Statement ;
up:attribution _:744740 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:744773 a rdf:Statement ;
up:source unirule:MF_02097 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:744774 a rdf:Statement ;
up:attribution _:744741 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02097
#Rule MF_02097 Created by:? on:2017-10-31 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02097 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_02097a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02097a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02097a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02097a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02097a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02097a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02097a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02097a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02097a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionD0C9N663 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0C9N665 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0C9N6MF_0209758 .
?templateMotifSequenceMatchRegionD0C9N663 faldo:begin ?templateMotifSequenceMatchBeginD0C9N664 .
?templateMotifSequenceMatchBeginD0C9N664 faldo:position ?templateMotifSequenceMatchBeginPositionD0C9N659 ;
faldo:reference isoform:D0C9N6-1 .
?templateMotifSequenceProfileAlignmentOperationD0C9N665 edam:has_input signature:MF_02097 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0209769 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0C9N6MF_0209760 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0209768 .
?targetMotifMatchRegionMatchBeginMF_0209768 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0209761 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0209769 edam:has_input signature:MF_02097 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0C9N6MF_0209758, 1, (STRLEN(?templateMotifCigarD0C9N6MF_0209758) - STRLEN(REPLACE(?templateMotifCigarD0C9N6MF_0209758, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionD0C9N659) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209760, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209760) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209760, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209760) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0209761) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0C9N6MF_0209758, 1, (STRLEN(?templateMotifCigarD0C9N6MF_0209758) - STRLEN(REPLACE(?templateMotifCigarD0C9N6MF_0209758, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionD0C9N659) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209760, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209760) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209760, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209760) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0209761) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0C9N6MF_0209758, 1, (STRLEN(?templateMotifCigarD0C9N6MF_0209758) - STRLEN(REPLACE(?templateMotifCigarD0C9N6MF_0209758, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionD0C9N659) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209760, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209760) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209760, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209760) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0209761) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0C9N6MF_0209758, 1, (STRLEN(?templateMotifCigarD0C9N6MF_0209758) - STRLEN(REPLACE(?templateMotifCigarD0C9N6MF_0209758, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionD0C9N659) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209760, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209760) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209760, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209760) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0209761) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionD0C9N687 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0C9N689 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0C9N6MF_0209782 .
?templateMotifSequenceMatchRegionD0C9N687 faldo:begin ?templateMotifSequenceMatchBeginD0C9N688 .
?templateMotifSequenceMatchBeginD0C9N688 faldo:position ?templateMotifSequenceMatchBeginPositionD0C9N683 ;
faldo:reference isoform:D0C9N6-1 .
?templateMotifSequenceProfileAlignmentOperationD0C9N689 edam:has_input signature:MF_02097 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0209793 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0C9N6MF_0209784 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0209792 .
?targetMotifMatchRegionMatchBeginMF_0209792 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0209785 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0209793 edam:has_input signature:MF_02097 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0C9N6MF_0209782, 1, (STRLEN(?templateMotifCigarD0C9N6MF_0209782) - STRLEN(REPLACE(?templateMotifCigarD0C9N6MF_0209782, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionD0C9N683) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209784, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209784) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209784, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209784, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209784) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209784, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0209785) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02097a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionD0C9N6102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0C9N6104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0C9N6MF_0209797 .
?templateMotifSequenceMatchRegionD0C9N6102 faldo:begin ?templateMotifSequenceMatchBeginD0C9N6103 .
?templateMotifSequenceMatchBeginD0C9N6103 faldo:position ?templateMotifSequenceMatchBeginPositionD0C9N698 ;
faldo:reference isoform:D0C9N6-1 .
?templateMotifSequenceProfileAlignmentOperationD0C9N6104 edam:has_input signature:MF_02097 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02097108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0C9N6MF_0209799 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02097107 .
?targetMotifMatchRegionMatchBeginMF_02097107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02097100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02097108 edam:has_input signature:MF_02097 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0C9N6MF_0209797, 1, (STRLEN(?templateMotifCigarD0C9N6MF_0209797) - STRLEN(REPLACE(?templateMotifCigarD0C9N6MF_0209797, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionD0C9N698) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209799, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209799) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209799, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0C9N6MF_0209799, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_0209799) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_0209799, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_02097100) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs2t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02097a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionD0C9N6117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0C9N6119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0C9N6MF_02097112 .
?templateMotifSequenceMatchRegionD0C9N6117 faldo:begin ?templateMotifSequenceMatchBeginD0C9N6118 .
?templateMotifSequenceMatchBeginD0C9N6118 faldo:position ?templateMotifSequenceMatchBeginPositionD0C9N6113 ;
faldo:reference isoform:D0C9N6-1 .
?templateMotifSequenceProfileAlignmentOperationD0C9N6119 edam:has_input signature:MF_02097 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02097123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0C9N6MF_02097114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02097122 .
?targetMotifMatchRegionMatchBeginMF_02097122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02097115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02097123 edam:has_input signature:MF_02097 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0C9N6MF_02097112, 1, (STRLEN(?templateMotifCigarD0C9N6MF_02097112) - STRLEN(REPLACE(?templateMotifCigarD0C9N6MF_02097112, CONCAT('^(?:-*[^-]){', STR(((323 - ?templateMotifSequenceMatchBeginPositionD0C9N6113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0C9N6MF_02097114, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_02097114) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_02097114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0C9N6MF_02097114, 1, (STRLEN(?targetMotifMatchCigarD0C9N6MF_02097114) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N6MF_02097114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_02097115) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs2t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02097a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag127) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag127, ?UNBOUND_VARIABLE) AS ?case11) .
}
"xsd:string |
