| http://purl.uniprot.org/unirules/MF_02235#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:772660 up:source unirule:MF_02235 .
_:772661 up:source unirule:MF_02235 .
_:772662 up:source unirule:MF_02235 .
_:772663 up:source unirule:MF_02235 .
_:772664 up:source unirule:MF_02235 .
_:772665 up:source unirule:MF_02235 .
_:772666 up:source unirule:MF_02235 .
_:772667 up:source unirule:MF_02235 .
_:772668 up:source unirule:MF_02235 .
_:772669 up:source unirule:MF_02235 .
_:772670 up:source unirule:MF_02235 .
_:772671 up:source unirule:MF_02235 .
_:772672 up:source unirule:MF_02235 .
_:772673 up:source unirule:MF_02235 .
_:772674 up:source unirule:MF_02235 .
_:772675 up:source unirule:MF_02235 .
_:772676 up:source unirule:MF_02235 .
_:772677 up:source unirule:MF_02235 .
_:772678 up:source unirule:MF_02235 .
_:772679 up:source unirule:MF_02235 .
_:772680 up:source unirule:MF_02235 .
_:772681 up:source unirule:MF_02235 .
_:772682 up:source unirule:MF_02235 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0006526 ,
GO:0016743 ,
keyword:28 ,
keyword:55 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.3.11' ;
up:fullName 'N-succinylornithine carbamoyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N-succinyl-L-ornithine transcarbamylase' ;
up:shortName 'SOTCase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel "argF'" .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the transfer of the carbamoyl group from carbamoyl phosphate to the delta-amino group of N(2)-succinyl-L-ornithine to produce N(2)-succinyl-L-citrulline. Is essential for arginine biosynthesis.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aspartate/ornithine carbamoyltransferase superfamily. SOTCase family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:58228 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:58228 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:58228 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:58228 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:58228 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:58514 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:58514 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:58514 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:58514 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:58228 .
_:772683 a rdf:Statement ;
up:attribution _:772660 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:772684 a rdf:Statement ;
up:attribution _:772661 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:772685 a rdf:Statement ;
up:attribution _:772662 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:772686 a rdf:Statement ;
up:attribution _:772663 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:772687 a rdf:Statement ;
up:attribution _:772664 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:772688 a rdf:Statement ;
up:attribution _:772665 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:772689 a rdf:Statement ;
up:attribution _:772666 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:772690 a rdf:Statement ;
up:attribution _:772667 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:772691 a rdf:Statement ;
up:attribution _:772668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:772692 a rdf:Statement ;
up:attribution _:772669 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:772693 a rdf:Statement ;
up:attribution _:772670 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:772694 a rdf:Statement ;
up:attribution _:772671 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016743 .
_:772695 a rdf:Statement ;
up:attribution _:772672 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006526 .
_:772696 a rdf:Statement ;
up:source unirule:MF_02235 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:772697 a rdf:Statement ;
up:attribution _:772673 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:772698 a rdf:Statement ;
up:source unirule:MF_02235 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:772699 a rdf:Statement ;
up:attribution _:772674 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:772700 a rdf:Statement ;
up:source unirule:MF_02235 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:772701 a rdf:Statement ;
up:attribution _:772675 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:772702 a rdf:Statement ;
up:source unirule:MF_02235 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:772703 a rdf:Statement ;
up:attribution _:772676 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:772704 a rdf:Statement ;
up:source unirule:MF_02235 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:772705 a rdf:Statement ;
up:attribution _:772677 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:772706 a rdf:Statement ;
up:source unirule:MF_02235 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:772707 a rdf:Statement ;
up:attribution _:772678 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:772708 a rdf:Statement ;
up:source unirule:MF_02235 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:772709 a rdf:Statement ;
up:attribution _:772679 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:772710 a rdf:Statement ;
up:source unirule:MF_02235 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:772711 a rdf:Statement ;
up:attribution _:772680 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:772712 a rdf:Statement ;
up:source unirule:MF_02235 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:772713 a rdf:Statement ;
up:attribution _:772681 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:772714 a rdf:Statement ;
up:source unirule:MF_02235 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:772715 a rdf:Statement ;
up:attribution _:772682 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02235
#Rule MF_02235 Created by:? on:2019-10-16 Modified by:Catherine Rivoire on:2024-11-05
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02235 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02235a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionE1WKT584 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT586 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE1WKT5MF_0223579 .
?templateMotifSequenceMatchRegionE1WKT584 faldo:begin ?templateMotifSequenceMatchBeginE1WKT585 .
?templateMotifSequenceMatchBeginE1WKT585 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT580 ;
faldo:reference isoform:E1WKT5-1 .
?templateMotifSequenceProfileAlignmentOperationE1WKT586 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0223590 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE1WKT5MF_0223581 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0223589 .
?targetMotifMatchRegionMatchBeginMF_0223589 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223582 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0223590 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_0223579, 1, (STRLEN(?templateMotifCigarE1WKT5MF_0223579) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_0223579, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionE1WKT580) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223581, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223581) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223581, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223581) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0223582) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_0223579, 1, (STRLEN(?templateMotifCigarE1WKT5MF_0223579) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_0223579, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionE1WKT580) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223581, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223581) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223581, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223581) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0223582) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('S[LM]RT', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionE1WKT5101 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5103 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE1WKT5MF_0223596 .
?templateMotifSequenceMatchRegionE1WKT5101 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5102 .
?templateMotifSequenceMatchBeginE1WKT5102 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT597 ;
faldo:reference isoform:E1WKT5-1 .
?templateMotifSequenceProfileAlignmentOperationE1WKT5103 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235107 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE1WKT5MF_0223598 .
?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235106 .
?targetMotifMatchRegionMatchBeginMF_02235106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223599 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02235107 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_0223596, 1, (STRLEN(?templateMotifCigarE1WKT5MF_0223596) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_0223596, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionE1WKT597) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223598, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223598) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223598, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223598) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0223599) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_0223596, 1, (STRLEN(?templateMotifCigarE1WKT5MF_0223596) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_0223596, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionE1WKT597) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223598, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223598) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_0223598, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_0223598) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_0223598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_0223599) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('HP[LC]Q', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionE1WKT5118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE1WKT5MF_02235113 .
?templateMotifSequenceMatchRegionE1WKT5118 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5119 .
?templateMotifSequenceMatchBeginE1WKT5119 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5114 ;
faldo:reference isoform:E1WKT5-1 .
?templateMotifSequenceProfileAlignmentOperationE1WKT5120 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE1WKT5MF_02235115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235123 .
?targetMotifMatchRegionMatchBeginMF_02235123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02235124 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235113, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235113) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235113, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionE1WKT5114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235115, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235115) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235115, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235115) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_02235116) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235113, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235113) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235113, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionE1WKT5114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235115, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235115) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235115, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235115) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_02235116) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)) = 'CL')) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionE1WKT5135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE1WKT5MF_02235130 .
?templateMotifSequenceMatchRegionE1WKT5135 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5136 .
?templateMotifSequenceMatchBeginE1WKT5136 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5131 ;
faldo:reference isoform:E1WKT5-1 .
?templateMotifSequenceProfileAlignmentOperationE1WKT5137 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE1WKT5MF_02235132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235140 .
?targetMotifMatchRegionMatchBeginMF_02235140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02235141 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235130, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235130) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235130, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionE1WKT5131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235132, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235132) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235132, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235132) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_02235133) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionE1WKT5150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE1WKT5MF_02235145 .
?templateMotifSequenceMatchRegionE1WKT5150 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5151 .
?templateMotifSequenceMatchBeginE1WKT5151 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5146 ;
faldo:reference isoform:E1WKT5-1 .
?templateMotifSequenceProfileAlignmentOperationE1WKT5152 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE1WKT5MF_02235147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235155 .
?targetMotifMatchRegionMatchBeginMF_02235155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02235156 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235145, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235145) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235145, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionE1WKT5146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235147, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235147) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235147, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235147) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_02235148) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionE1WKT5165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE1WKT5MF_02235160 .
?templateMotifSequenceMatchRegionE1WKT5165 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5166 .
?templateMotifSequenceMatchBeginE1WKT5166 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5161 ;
faldo:reference isoform:E1WKT5-1 .
?templateMotifSequenceProfileAlignmentOperationE1WKT5167 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE1WKT5MF_02235162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235170 .
?targetMotifMatchRegionMatchBeginMF_02235170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02235171 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235160, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235160) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235160, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionE1WKT5161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235162, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235162) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235162, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235162) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_02235163) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionE1WKT5180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE1WKT5MF_02235175 .
?templateMotifSequenceMatchRegionE1WKT5180 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5181 .
?templateMotifSequenceMatchBeginE1WKT5181 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5176 ;
faldo:reference isoform:E1WKT5-1 .
?templateMotifSequenceProfileAlignmentOperationE1WKT5182 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE1WKT5MF_02235177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235185 .
?targetMotifMatchRegionMatchBeginMF_02235185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02235186 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235175, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235175) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235175, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionE1WKT5176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235177, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235177) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235177, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235177) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_02235178) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionE1WKT5195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE1WKT5MF_02235190 .
?templateMotifSequenceMatchRegionE1WKT5195 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5196 .
?templateMotifSequenceMatchBeginE1WKT5196 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5191 ;
faldo:reference isoform:E1WKT5-1 .
?templateMotifSequenceProfileAlignmentOperationE1WKT5197 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE1WKT5MF_02235192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235200 .
?targetMotifMatchRegionMatchBeginMF_02235200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02235201 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235190, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235190) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235190, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionE1WKT5191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235192, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235192) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235192, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235192) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_02235193) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionE1WKT5210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE1WKT5MF_02235205 .
?templateMotifSequenceMatchRegionE1WKT5210 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5211 .
?templateMotifSequenceMatchBeginE1WKT5211 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5206 ;
faldo:reference isoform:E1WKT5-1 .
?templateMotifSequenceProfileAlignmentOperationE1WKT5212 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE1WKT5MF_02235207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235215 .
?targetMotifMatchRegionMatchBeginMF_02235215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02235216 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235205, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235205) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235205, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionE1WKT5206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235207, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235207) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235207, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235207) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_02235208) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionE1WKT5225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE1WKT5227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE1WKT5MF_02235220 .
?templateMotifSequenceMatchRegionE1WKT5225 faldo:begin ?templateMotifSequenceMatchBeginE1WKT5226 .
?templateMotifSequenceMatchBeginE1WKT5226 faldo:position ?templateMotifSequenceMatchBeginPositionE1WKT5221 ;
faldo:reference isoform:E1WKT5-1 .
?templateMotifSequenceProfileAlignmentOperationE1WKT5227 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02235231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE1WKT5MF_02235222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02235230 .
?targetMotifMatchRegionMatchBeginMF_02235230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02235223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02235231 edam:has_input signature:MF_02235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE1WKT5MF_02235220, 1, (STRLEN(?templateMotifCigarE1WKT5MF_02235220) - STRLEN(REPLACE(?templateMotifCigarE1WKT5MF_02235220, CONCAT('^(?:-*[^-]){', STR(((302 - ?templateMotifSequenceMatchBeginPositionE1WKT5221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235222, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235222) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE1WKT5MF_02235222, 1, (STRLEN(?targetMotifMatchCigarE1WKT5MF_02235222) - STRLEN(REPLACE(?targetMotifMatchCigarE1WKT5MF_02235222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_02235223) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02235a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
}
"xsd:string |
