| http://purl.uniprot.org/unirules/MF_03065#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:810141 up:source unirule:MF_03065 .
_:810142 up:source unirule:MF_03065 .
_:810143 up:source unirule:MF_03065 .
_:810144 up:source unirule:MF_03065 .
_:810145 up:source unirule:MF_03065 .
_:810146 up:source unirule:MF_03065 .
_:810147 up:source unirule:MF_03065 .
_:810148 up:source unirule:MF_03065 .
_:810149 up:source unirule:MF_03065 .
_:810150 up:source unirule:MF_03065 .
_:810151 up:source unirule:MF_03065 .
_:810152 up:source unirule:MF_03065 .
_:810153 up:source unirule:MF_03065 .
_:810154 up:source unirule:MF_03065 .
_:810155 up:source unirule:MF_03065 .
_:810156 up:source unirule:MF_03065 .
_:810157 up:source unirule:MF_03065 .
_:810158 up:source unirule:MF_03065 .
_:810159 up:source unirule:MF_03065 .
_:810160 up:source unirule:MF_03065 .
_:810161 up:source unirule:MF_03065 .
_:810162 up:source unirule:MF_03065 .
_:810163 up:source unirule:MF_03065 .
_:810164 up:source unirule:MF_03065 .
_:810165 up:source unirule:MF_03065 .
_:810166 up:source unirule:MF_03065 .
_:810167 up:source unirule:MF_03065 .
_:810168 up:source unirule:MF_03065 .
_:810169 up:source unirule:MF_03065 .
_:810170 up:source unirule:MF_03065 .
_:810171 up:source unirule:MF_03065 .
_:810172 up:source unirule:MF_03065 .
_:810173 up:source unirule:MF_03065 .
?this up:annotation ?annotation0 ,
?annotation2 ;
up:classifiedWith GO:0003677 ,
GO:0003678 ,
GO:0005524 ,
GO:0005634 ,
GO:0006281 ,
GO:0010569 ,
GO:0046872 ,
GO:0051539 ,
keyword:227 ,
keyword:234 ,
keyword:238 ,
keyword:347 ,
keyword:378 ,
keyword:413 ,
keyword:539 ,
keyword:547 ,
keyword:67 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity .
?annotation2 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the helicase family. RAD3/XPD subfamily.' .
?case4 up:classifiedWith keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 .
?case6 up:classifiedWith GO:0000723 ;
up:recommendedName ?name7 .
?name7 up:ecName '5.6.2.-' ;
up:fullName 'Regulator of telomere elongation helicase 1' ;
rdf:type up:Structured_Name .
?case10 up:recommendedName ?name11 .
?name11 up:ecName '5.6.2.-' ;
up:fullName 'Regulator of telomere elongation helicase 1 homolog' ;
rdf:type up:Structured_Name .
?pfs12 up:annotation ?annotation13 ,
?annotation19 ,
?annotation25 ,
?annotation31 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:49883 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:49883 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:49883 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:49883 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'PIP-box' .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear localization signal' .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear localization signal' .
?pfsb51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
_:810174 a rdf:Statement ;
up:attribution _:810141 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:810175 a rdf:Statement ;
up:attribution _:810142 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:810176 a rdf:Statement ;
up:attribution _:810143 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:810177 a rdf:Statement ;
up:attribution _:810144 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:810178 a rdf:Statement ;
up:attribution _:810145 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:810179 a rdf:Statement ;
up:attribution _:810146 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:810180 a rdf:Statement ;
up:attribution _:810147 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:347 .
_:810181 a rdf:Statement ;
up:attribution _:810148 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:810182 a rdf:Statement ;
up:attribution _:810149 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:810183 a rdf:Statement ;
up:attribution _:810150 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:810184 a rdf:Statement ;
up:attribution _:810151 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:810185 a rdf:Statement ;
up:attribution _:810152 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:810186 a rdf:Statement ;
up:attribution _:810153 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
_:810187 a rdf:Statement ;
up:attribution _:810154 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:810188 a rdf:Statement ;
up:attribution _:810155 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003678 .
_:810189 a rdf:Statement ;
up:attribution _:810156 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:810190 a rdf:Statement ;
up:attribution _:810157 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:810191 a rdf:Statement ;
up:attribution _:810158 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006281 .
_:810192 a rdf:Statement ;
up:attribution _:810159 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010569 .
_:810193 a rdf:Statement ;
up:attribution _:810160 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:810194 a rdf:Statement ;
up:attribution _:810161 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:810195 a rdf:Statement ;
up:attribution _:810162 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:810196 a rdf:Statement ;
up:attribution _:810163 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:810197 a rdf:Statement ;
up:attribution _:810164 ;
rdf:subject ?case6 ;
rdf:predicate up:recommendedName ;
rdf:object ?name7 .
_:810198 a rdf:Statement ;
up:attribution _:810165 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000723 .
_:810199 a rdf:Statement ;
up:attribution _:810166 ;
rdf:subject ?case10 ;
rdf:predicate up:recommendedName ;
rdf:object ?name11 .
_:810200 a rdf:Statement ;
up:source unirule:MF_03065 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:810201 a rdf:Statement ;
up:attribution _:810167 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:810202 a rdf:Statement ;
up:source unirule:MF_03065 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:810203 a rdf:Statement ;
up:attribution _:810168 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:810204 a rdf:Statement ;
up:source unirule:MF_03065 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:810205 a rdf:Statement ;
up:attribution _:810169 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:810206 a rdf:Statement ;
up:source unirule:MF_03065 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:810207 a rdf:Statement ;
up:attribution _:810170 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:810208 a rdf:Statement ;
up:source unirule:MF_03065 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:810209 a rdf:Statement ;
up:attribution _:810171 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:810210 a rdf:Statement ;
up:source unirule:MF_03065 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:810211 a rdf:Statement ;
up:attribution _:810172 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:810212 a rdf:Statement ;
up:source unirule:MF_03065 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:810213 a rdf:Statement ;
up:attribution _:810173 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03065
#Rule MF_03065 Created by:? on:2014-01-23 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03065 .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(URI(CONCAT(STR(?this), '#MF_03065a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03065a2')) AS ?annotation2) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionQ9NZ7160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9NZ7162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9NZ71MF_0306555 .
?templateMotifSequenceMatchRegionQ9NZ7160 faldo:begin ?templateMotifSequenceMatchBeginQ9NZ7161 .
?templateMotifSequenceMatchBeginQ9NZ7161 faldo:position ?templateMotifSequenceMatchBeginPositionQ9NZ7156 ;
faldo:reference isoform:Q9NZ71-1 .
?templateMotifSequenceProfileAlignmentOperationQ9NZ7162 edam:has_input signature:MF_03065 ;
rdf:type edam:operation_0300 .
?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0306566 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9NZ71MF_0306557 .
?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0306565 .
?targetMotifMatchRegionMatchBeginMF_0306565 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0306558 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0306566 edam:has_input signature:MF_03065 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9NZ71MF_0306555, 1, (STRLEN(?templateMotifCigarQ9NZ71MF_0306555) - STRLEN(REPLACE(?templateMotifCigarQ9NZ71MF_0306555, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionQ9NZ7156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306557, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306557) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306557, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306557, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306557) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306557, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0306558) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9NZ71MF_0306555, 1, (STRLEN(?templateMotifCigarQ9NZ71MF_0306555) - STRLEN(REPLACE(?templateMotifCigarQ9NZ71MF_0306555, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionQ9NZ7156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306557, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306557) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306557, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306557, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306557) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306557, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0306558) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9NZ71MF_0306555, 1, (STRLEN(?templateMotifCigarQ9NZ71MF_0306555) - STRLEN(REPLACE(?templateMotifCigarQ9NZ71MF_0306555, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionQ9NZ7156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306557, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306557) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306557, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306557, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306557) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306557, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0306558) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9NZ71MF_0306555, 1, (STRLEN(?templateMotifCigarQ9NZ71MF_0306555) - STRLEN(REPLACE(?templateMotifCigarQ9NZ71MF_0306555, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionQ9NZ7156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306557, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306557) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306557, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306557, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306557) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306557, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0306558) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'C')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionQ9NZ7184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9NZ7186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9NZ71MF_0306579 .
?templateMotifSequenceMatchRegionQ9NZ7184 faldo:begin ?templateMotifSequenceMatchBeginQ9NZ7185 .
?templateMotifSequenceMatchBeginQ9NZ7185 faldo:position ?templateMotifSequenceMatchBeginPositionQ9NZ7180 ;
faldo:reference isoform:Q9NZ71-1 .
?templateMotifSequenceProfileAlignmentOperationQ9NZ7186 edam:has_input signature:MF_03065 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0306590 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9NZ71MF_0306581 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0306589 .
?targetMotifMatchRegionMatchBeginMF_0306589 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0306582 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0306590 edam:has_input signature:MF_03065 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagPIP) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9NZ71MF_0306579, 1, (STRLEN(?templateMotifCigarQ9NZ71MF_0306579) - STRLEN(REPLACE(?templateMotifCigarQ9NZ71MF_0306579, CONCAT('^(?:-*[^-]){', STR(((1178 - ?templateMotifSequenceMatchBeginPositionQ9NZ7180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306581, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306581) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306581, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306581) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0306582) - 1) AS ?thisPositionOn41) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9NZ71MF_0306579, 1, (STRLEN(?templateMotifCigarQ9NZ71MF_0306579) - STRLEN(REPLACE(?templateMotifCigarQ9NZ71MF_0306579, CONCAT('^(?:-*[^-]){', STR(((1185 - ?templateMotifSequenceMatchBeginPositionQ9NZ7180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306581, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306581) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306581, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306581) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306581, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0306582) - 1) AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER (REGEX('Q[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[ILVAMG][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[FL][FL]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03065a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionQ9NZ71101 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9NZ71103 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9NZ71MF_0306596 .
?templateMotifSequenceMatchRegionQ9NZ71101 faldo:begin ?templateMotifSequenceMatchBeginQ9NZ71102 .
?templateMotifSequenceMatchBeginQ9NZ71102 faldo:position ?templateMotifSequenceMatchBeginPositionQ9NZ7197 ;
faldo:reference isoform:Q9NZ71-1 .
?templateMotifSequenceProfileAlignmentOperationQ9NZ71103 edam:has_input signature:MF_03065 ;
rdf:type edam:operation_0300 .
?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03065107 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9NZ71MF_0306598 .
?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03065106 .
?targetMotifMatchRegionMatchBeginMF_03065106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0306599 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03065107 edam:has_input signature:MF_03065 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9NZ71MF_0306596, 1, (STRLEN(?templateMotifCigarQ9NZ71MF_0306596) - STRLEN(REPLACE(?templateMotifCigarQ9NZ71MF_0306596, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionQ9NZ7197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306598, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306598) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306598, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306598) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0306599) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9NZ71MF_0306596, 1, (STRLEN(?templateMotifCigarQ9NZ71MF_0306596) - STRLEN(REPLACE(?templateMotifCigarQ9NZ71MF_0306596, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionQ9NZ7197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306598, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306598) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_0306598, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_0306598) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_0306598, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_0306599) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs3t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER (REGEX('[RK][RK][ARNDCQEGHILKMFPSTWYVBZJUOX]{11)R[RK]K[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03065a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionQ9NZ71118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9NZ71120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9NZ71MF_03065113 .
?templateMotifSequenceMatchRegionQ9NZ71118 faldo:begin ?templateMotifSequenceMatchBeginQ9NZ71119 .
?templateMotifSequenceMatchBeginQ9NZ71119 faldo:position ?templateMotifSequenceMatchBeginPositionQ9NZ71114 ;
faldo:reference isoform:Q9NZ71-1 .
?templateMotifSequenceProfileAlignmentOperationQ9NZ71120 edam:has_input signature:MF_03065 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03065124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9NZ71MF_03065115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03065123 .
?targetMotifMatchRegionMatchBeginMF_03065123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03065116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03065124 edam:has_input signature:MF_03065 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9NZ71MF_03065113, 1, (STRLEN(?templateMotifCigarQ9NZ71MF_03065113) - STRLEN(REPLACE(?templateMotifCigarQ9NZ71MF_03065113, CONCAT('^(?:-*[^-]){', STR(((871 - ?templateMotifSequenceMatchBeginPositionQ9NZ71114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_03065115, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_03065115) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_03065115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_03065115, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_03065115) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_03065115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_03065116) - 1) AS ?thisPositionOn53) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9NZ71MF_03065113, 1, (STRLEN(?templateMotifCigarQ9NZ71MF_03065113) - STRLEN(REPLACE(?templateMotifCigarQ9NZ71MF_03065113, CONCAT('^(?:-*[^-]){', STR(((877 - ?templateMotifSequenceMatchBeginPositionQ9NZ71114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_03065115, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_03065115) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_03065115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9NZ71MF_03065115, 1, (STRLEN(?targetMotifMatchCigarQ9NZ71MF_03065115) - STRLEN(REPLACE(?targetMotifMatchCigarQ9NZ71MF_03065115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_03065116) - 1) AS ?thisPositionOn54) .
BIND(?this AS ?pfs3t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse52) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]{4)[RK][RK]K', SUBSTR(?thisSequenceValue, ?thisPositionOn53, (?thisPositionOn54 - ?thisPositionOn53)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03065a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag130) .
}
BIND(IF(BOUND(?tagPIP), ?caseWithTag130, ?UNBOUND_VARIABLE) AS ?case3) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag131) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag131, ?UNBOUND_VARIABLE) AS ?case4) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case6) .
BIND(URI(CONCAT(STR(?this), '#MF_03065a7')) AS ?name7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case10) .
BIND(URI(CONCAT(STR(?this), '#MF_03065a11')) AS ?name11) .
}
}
"xsd:string |
