| http://purl.uniprot.org/unirules/MF_03128#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:831358 up:source unirule:MF_03128 .
_:831359 up:source unirule:MF_03128 .
_:831360 up:source unirule:MF_03128 .
_:831361 up:source unirule:MF_03128 .
_:831362 up:source unirule:MF_03128 .
_:831363 up:source unirule:MF_03128 .
_:831364 up:source unirule:MF_03128 .
_:831365 up:source unirule:MF_03128 .
_:831366 up:source unirule:MF_03128 .
_:831367 up:source unirule:MF_03128 .
_:831368 up:source unirule:MF_03128 .
_:831369 up:source unirule:MF_03128 .
_:831370 up:source unirule:MF_03128 .
_:831371 up:source unirule:MF_03128 .
_:831372 up:source unirule:MF_03128 .
_:831373 up:source unirule:MF_03128 .
_:831374 up:source unirule:MF_03128 .
_:831375 up:source unirule:MF_03128 .
_:831376 up:source unirule:MF_03128 .
_:831377 up:source unirule:MF_03128 .
_:831378 up:source unirule:MF_03128 .
_:831379 up:source unirule:MF_03128 .
_:831380 up:source unirule:MF_03128 .
_:831381 up:source unirule:MF_03128 .
_:831382 up:source unirule:MF_03128 .
_:831383 up:source unirule:MF_03128 .
_:831384 up:source unirule:MF_03128 .
_:831385 up:source unirule:MF_03128 .
_:831386 up:source unirule:MF_03128 .
_:831387 up:source unirule:MF_03128 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation11 ;
up:classifiedWith GO:0005739 ,
GO:0009107 ,
GO:0009249 ,
GO:0016783 ,
GO:0016992 ,
GO:0051539 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:496 ,
keyword:4 ,
keyword:808 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.8.1.8' ;
up:fullName 'Lipoyl synthase, mitochondrial' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Lipoate synthase' ;
up:shortName 'Lip-syn' ,
'LS' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Lipoic acid synthase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'LIP1' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 [4Fe-4S] clusters per subunit. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Protein modification; protein lipoylation via endogenous pathway; protein N(6)-(lipoyl)lysine from octanoyl-[acyl-carrier-protein]: step 2/2.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the radical SAM superfamily. Lipoyl synthase family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:49883 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:49883 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:49883 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:49883 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:49883 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:49883 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:49883 .
_:831388 a rdf:Statement ;
up:attribution _:831358 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:831389 a rdf:Statement ;
up:attribution _:831359 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:831390 a rdf:Statement ;
up:attribution _:831360 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:831391 a rdf:Statement ;
up:attribution _:831361 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:831392 a rdf:Statement ;
up:attribution _:831362 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:831393 a rdf:Statement ;
up:attribution _:831363 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:831394 a rdf:Statement ;
up:attribution _:831364 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:831395 a rdf:Statement ;
up:attribution _:831365 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:831396 a rdf:Statement ;
up:attribution _:831366 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:831397 a rdf:Statement ;
up:attribution _:831367 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:831398 a rdf:Statement ;
up:attribution _:831368 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:831399 a rdf:Statement ;
up:attribution _:831369 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:831400 a rdf:Statement ;
up:attribution _:831370 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:831401 a rdf:Statement ;
up:attribution _:831371 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:831402 a rdf:Statement ;
up:attribution _:831372 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:831403 a rdf:Statement ;
up:attribution _:831373 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:831404 a rdf:Statement ;
up:attribution _:831374 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:831405 a rdf:Statement ;
up:attribution _:831375 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016783 .
_:831406 a rdf:Statement ;
up:attribution _:831376 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016992 .
_:831407 a rdf:Statement ;
up:attribution _:831377 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
_:831408 a rdf:Statement ;
up:attribution _:831378 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009107 .
_:831409 a rdf:Statement ;
up:attribution _:831379 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009249 .
_:831410 a rdf:Statement ;
up:attribution _:831380 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005739 .
_:831411 a rdf:Statement ;
up:source unirule:MF_03128 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:831412 a rdf:Statement ;
up:attribution _:831381 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:831413 a rdf:Statement ;
up:source unirule:MF_03128 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:831414 a rdf:Statement ;
up:attribution _:831382 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:831415 a rdf:Statement ;
up:source unirule:MF_03128 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:831416 a rdf:Statement ;
up:attribution _:831383 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:831417 a rdf:Statement ;
up:source unirule:MF_03128 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:831418 a rdf:Statement ;
up:attribution _:831384 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:831419 a rdf:Statement ;
up:source unirule:MF_03128 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:831420 a rdf:Statement ;
up:attribution _:831385 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:831421 a rdf:Statement ;
up:source unirule:MF_03128 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:831422 a rdf:Statement ;
up:attribution _:831386 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:831423 a rdf:Statement ;
up:source unirule:MF_03128 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:831424 a rdf:Statement ;
up:attribution _:831387 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03128
#Rule MF_03128 Created by:? on:2012-08-22 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03128 .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(URI(CONCAT(STR(?this), '#MF_03128a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionQ9ZWT166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZWT168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZWT1MF_0312861 .
?templateMotifSequenceMatchRegionQ9ZWT166 faldo:begin ?templateMotifSequenceMatchBeginQ9ZWT167 .
?templateMotifSequenceMatchBeginQ9ZWT167 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZWT162 ;
faldo:reference isoform:Q9ZWT1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZWT168 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0312872 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZWT1MF_0312863 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0312871 .
?targetMotifMatchRegionMatchBeginMF_0312871 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0312864 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0312872 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZWT1MF_0312861, 1, (STRLEN(?templateMotifCigarQ9ZWT1MF_0312861) - STRLEN(REPLACE(?templateMotifCigarQ9ZWT1MF_0312861, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ9ZWT162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_0312863, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_0312863) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_0312863, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_0312863, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_0312863) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_0312863, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0312864) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionQ9ZWT181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZWT183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZWT1MF_0312876 .
?templateMotifSequenceMatchRegionQ9ZWT181 faldo:begin ?templateMotifSequenceMatchBeginQ9ZWT182 .
?templateMotifSequenceMatchBeginQ9ZWT182 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZWT177 ;
faldo:reference isoform:Q9ZWT1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZWT183 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0312887 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZWT1MF_0312878 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0312886 .
?targetMotifMatchRegionMatchBeginMF_0312886 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0312879 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0312887 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZWT1MF_0312876, 1, (STRLEN(?templateMotifCigarQ9ZWT1MF_0312876) - STRLEN(REPLACE(?templateMotifCigarQ9ZWT1MF_0312876, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionQ9ZWT177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_0312878, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_0312878) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_0312878, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_0312878, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_0312878) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_0312878, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0312879) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionQ9ZWT196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZWT198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZWT1MF_0312891 .
?templateMotifSequenceMatchRegionQ9ZWT196 faldo:begin ?templateMotifSequenceMatchBeginQ9ZWT197 .
?templateMotifSequenceMatchBeginQ9ZWT197 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZWT192 ;
faldo:reference isoform:Q9ZWT1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZWT198 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03128102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZWT1MF_0312893 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03128101 .
?targetMotifMatchRegionMatchBeginMF_03128101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0312894 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03128102 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZWT1MF_0312891, 1, (STRLEN(?templateMotifCigarQ9ZWT1MF_0312891) - STRLEN(REPLACE(?templateMotifCigarQ9ZWT1MF_0312891, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionQ9ZWT192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_0312893, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_0312893) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_0312893, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_0312893, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_0312893) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_0312893, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0312894) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionQ9ZWT1111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZWT1113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZWT1MF_03128106 .
?templateMotifSequenceMatchRegionQ9ZWT1111 faldo:begin ?templateMotifSequenceMatchBeginQ9ZWT1112 .
?templateMotifSequenceMatchBeginQ9ZWT1112 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZWT1107 ;
faldo:reference isoform:Q9ZWT1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZWT1113 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03128117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZWT1MF_03128108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03128116 .
?targetMotifMatchRegionMatchBeginMF_03128116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03128109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03128117 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZWT1MF_03128106, 1, (STRLEN(?templateMotifCigarQ9ZWT1MF_03128106) - STRLEN(REPLACE(?templateMotifCigarQ9ZWT1MF_03128106, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionQ9ZWT1107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_03128108, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_03128108) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_03128108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_03128108, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_03128108) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_03128108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_03128109) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionQ9ZWT1126 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZWT1128 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZWT1MF_03128121 .
?templateMotifSequenceMatchRegionQ9ZWT1126 faldo:begin ?templateMotifSequenceMatchBeginQ9ZWT1127 .
?templateMotifSequenceMatchBeginQ9ZWT1127 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZWT1122 ;
faldo:reference isoform:Q9ZWT1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZWT1128 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03128132 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZWT1MF_03128123 .
?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03128131 .
?targetMotifMatchRegionMatchBeginMF_03128131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03128124 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03128132 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZWT1MF_03128121, 1, (STRLEN(?templateMotifCigarQ9ZWT1MF_03128121) - STRLEN(REPLACE(?templateMotifCigarQ9ZWT1MF_03128121, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionQ9ZWT1122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_03128123, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_03128123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_03128123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_03128123, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_03128123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_03128123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_03128124) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionQ9ZWT1141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZWT1143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZWT1MF_03128136 .
?templateMotifSequenceMatchRegionQ9ZWT1141 faldo:begin ?templateMotifSequenceMatchBeginQ9ZWT1142 .
?templateMotifSequenceMatchBeginQ9ZWT1142 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZWT1137 ;
faldo:reference isoform:Q9ZWT1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZWT1143 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03128147 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZWT1MF_03128138 .
?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03128146 .
?targetMotifMatchRegionMatchBeginMF_03128146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03128139 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03128147 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZWT1MF_03128136, 1, (STRLEN(?templateMotifCigarQ9ZWT1MF_03128136) - STRLEN(REPLACE(?templateMotifCigarQ9ZWT1MF_03128136, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionQ9ZWT1137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_03128138, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_03128138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_03128138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_03128138, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_03128138) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_03128138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_03128139) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t150) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch155 faldo:location ?templateMotifSequenceMatchRegionQ9ZWT1156 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9ZWT1158 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9ZWT1MF_03128151 .
?templateMotifSequenceMatchRegionQ9ZWT1156 faldo:begin ?templateMotifSequenceMatchBeginQ9ZWT1157 .
?templateMotifSequenceMatchBeginQ9ZWT1157 faldo:position ?templateMotifSequenceMatchBeginPositionQ9ZWT1152 ;
faldo:reference isoform:Q9ZWT1-1 .
?templateMotifSequenceProfileAlignmentOperationQ9ZWT1158 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
?targetMotifMatch159 faldo:location ?targetMotifMatchRegionMatch160 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03128162 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9ZWT1MF_03128153 .
?targetMotifMatchRegionMatch160 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03128161 .
?targetMotifMatchRegionMatchBeginMF_03128161 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03128154 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03128162 edam:has_input signature:MF_03128 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9ZWT1MF_03128151, 1, (STRLEN(?templateMotifCigarQ9ZWT1MF_03128151) - STRLEN(REPLACE(?templateMotifCigarQ9ZWT1MF_03128151, CONCAT('^(?:-*[^-]){', STR(((350 - ?templateMotifSequenceMatchBeginPositionQ9ZWT1152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_03128153, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_03128153) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_03128153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9ZWT1MF_03128153, 1, (STRLEN(?targetMotifMatchCigarQ9ZWT1MF_03128153) - STRLEN(REPLACE(?targetMotifMatchCigarQ9ZWT1MF_03128153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_03128154) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03128a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
}
"xsd:string |
