| http://purl.uniprot.org/unirules/MF_03130#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:832595 up:source unirule:MF_03130 .
_:832596 up:source unirule:MF_03130 .
_:832597 up:source unirule:MF_03130 .
_:832598 up:source unirule:MF_03130 .
_:832599 up:source unirule:MF_03130 .
_:832600 up:source unirule:MF_03130 .
_:832601 up:source unirule:MF_03130 .
_:832602 up:source unirule:MF_03130 .
_:832603 up:source unirule:MF_03130 .
_:832604 up:source unirule:MF_03130 .
_:832605 up:source unirule:MF_03130 .
_:832606 up:source unirule:MF_03130 .
_:832607 up:source unirule:MF_03130 .
_:832608 up:source unirule:MF_03130 .
_:832609 up:source unirule:MF_03130 .
_:832610 up:source unirule:MF_03130 .
_:832611 up:source unirule:MF_03130 .
_:832612 up:source unirule:MF_03130 .
_:832613 up:source unirule:MF_03130 .
_:832614 up:source unirule:MF_03130 .
_:832615 up:source unirule:MF_03130 .
_:832616 up:source unirule:MF_03130 .
_:832617 up:source unirule:MF_03130 .
_:832618 up:source unirule:MF_03130 .
_:832619 up:source unirule:MF_03130 .
_:832620 up:source unirule:MF_03130 .
_:832621 up:source unirule:MF_03130 .
?this up:annotation ?annotation0 ,
?annotation2 ;
up:classifiedWith GO:0019799 ,
GO:0070507 ,
GO:0071929 ,
keyword:12 ,
keyword:808 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the acetyltransferase ATAT1 family.' .
?case3 up:classifiedWith keyword:7 .
?case4 up:alternativeName ?name6 ;
up:classifiedWith keyword:168 ,
keyword:206 ,
keyword:472 ,
keyword:963 ,
keyword:965 ,
keyword:966 ;
up:recommendedName ?name5 .
?name5 up:ecName '2.3.1.108' ;
up:fullName 'Alpha-tubulin N-acetyltransferase 1' ;
up:shortName 'Alpha-TAT' ,
'Alpha-TAT1' ,
'TAT' ;
rdf:type up:Structured_Name .
?name6 up:fullName 'Acetyltransferase mec-17 homolog' ;
rdf:type up:Structured_Name .
?case7 up:recommendedName ?name8 .
?name8 up:ecName '2.3.1.108' ;
up:fullName 'Alpha-tubulin N-acetyltransferase' ;
up:shortName 'Alpha-TAT' ,
'TAT' ;
rdf:type up:Structured_Name .
?case10 up:alternativeName ?name12 ;
up:recommendedName ?name11 .
?name11 up:ecName '2.3.1.108' ;
up:fullName 'Alpha-tubulin N-acetyltransferase' ;
up:shortName 'Alpha-TAT' ,
'TAT' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'Acetyltransferase mec-17 homolog' ;
rdf:type up:Structured_Name .
?case13 up:classifiedWith GO:0048666 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:57288 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:57288 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Crucial for catalytic activity' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine; by autocatalysis' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine; by autocatalysis' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine; by autocatalysis' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine; by autocatalysis' .
?pfsb54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
_:832622 a rdf:Statement ;
up:attribution _:832595 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:832623 a rdf:Statement ;
up:attribution _:832596 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:832624 a rdf:Statement ;
up:attribution _:832597 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:832625 a rdf:Statement ;
up:attribution _:832598 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:832626 a rdf:Statement ;
up:attribution _:832599 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019799 .
_:832627 a rdf:Statement ;
up:attribution _:832600 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0071929 .
_:832628 a rdf:Statement ;
up:attribution _:832601 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070507 .
_:832629 a rdf:Statement ;
up:attribution _:832602 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:832630 a rdf:Statement ;
up:attribution _:832603 ;
rdf:subject ?case4 ;
rdf:predicate up:recommendedName ;
rdf:object ?name5 .
_:832631 a rdf:Statement ;
up:attribution _:832604 ;
rdf:subject ?case4 ;
rdf:predicate up:alternativeName ;
rdf:object ?name6 .
_:832632 a rdf:Statement ;
up:attribution _:832605 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:965 .
_:832633 a rdf:Statement ;
up:attribution _:832606 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:966 .
_:832634 a rdf:Statement ;
up:attribution _:832607 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:168 .
_:832635 a rdf:Statement ;
up:attribution _:832608 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:832636 a rdf:Statement ;
up:attribution _:832609 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:206 .
_:832637 a rdf:Statement ;
up:attribution _:832610 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:832638 a rdf:Statement ;
up:attribution _:832611 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:832639 a rdf:Statement ;
up:attribution _:832612 ;
rdf:subject ?case10 ;
rdf:predicate up:recommendedName ;
rdf:object ?name11 .
_:832640 a rdf:Statement ;
up:attribution _:832613 ;
rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:832641 a rdf:Statement ;
up:attribution _:832614 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0048666 .
_:832642 a rdf:Statement ;
up:source unirule:MF_03130 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:832643 a rdf:Statement ;
up:attribution _:832615 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:832644 a rdf:Statement ;
up:source unirule:MF_03130 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:832645 a rdf:Statement ;
up:attribution _:832616 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:832646 a rdf:Statement ;
up:source unirule:MF_03130 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:832647 a rdf:Statement ;
up:attribution _:832617 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:832648 a rdf:Statement ;
up:source unirule:MF_03130 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:832649 a rdf:Statement ;
up:attribution _:832618 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:832650 a rdf:Statement ;
up:source unirule:MF_03130 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:832651 a rdf:Statement ;
up:attribution _:832619 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:832652 a rdf:Statement ;
up:source unirule:MF_03130 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:832653 a rdf:Statement ;
up:attribution _:832620 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:832654 a rdf:Statement ;
up:source unirule:MF_03130 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:832655 a rdf:Statement ;
up:attribution _:832621 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03130
#Rule MF_03130 Created by:? on:2012-10-30 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03130 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03130a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a2')) AS ?annotation2) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionQ5SQI063 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SQI065 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SQI0MF_0313058 .
?templateMotifSequenceMatchRegionQ5SQI063 faldo:begin ?templateMotifSequenceMatchBeginQ5SQI064 .
?templateMotifSequenceMatchBeginQ5SQI064 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SQI059 ;
faldo:reference isoform:Q5SQI0-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SQI065 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0313069 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SQI0MF_0313060 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0313068 .
?targetMotifMatchRegionMatchBeginMF_0313068 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0313061 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0313069 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SQI0MF_0313058, 1, (STRLEN(?templateMotifCigarQ5SQI0MF_0313058) - STRLEN(REPLACE(?templateMotifCigarQ5SQI0MF_0313058, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionQ5SQI059) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_0313060, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_0313060) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_0313060, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_0313060, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_0313060) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_0313060, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0313061) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SQI0MF_0313058, 1, (STRLEN(?templateMotifCigarQ5SQI0MF_0313058) - STRLEN(REPLACE(?templateMotifCigarQ5SQI0MF_0313058, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionQ5SQI059) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_0313060, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_0313060) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_0313060, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_0313060, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_0313060) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_0313060, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0313061) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER (REGEX('F[YF][ARNDCQEGHILKMFPSTWYVBZJUOX]{5)[QR][RK][ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionQ5SQI080 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SQI082 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SQI0MF_0313075 .
?templateMotifSequenceMatchRegionQ5SQI080 faldo:begin ?templateMotifSequenceMatchBeginQ5SQI081 .
?templateMotifSequenceMatchBeginQ5SQI081 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SQI076 ;
faldo:reference isoform:Q5SQI0-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SQI082 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0313086 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SQI0MF_0313077 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0313085 .
?targetMotifMatchRegionMatchBeginMF_0313085 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0313078 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0313086 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SQI0MF_0313075, 1, (STRLEN(?templateMotifCigarQ5SQI0MF_0313075) - STRLEN(REPLACE(?templateMotifCigarQ5SQI0MF_0313075, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionQ5SQI076) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_0313077, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_0313077) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_0313077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_0313077, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_0313077) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_0313077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0313078) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SQI0MF_0313075, 1, (STRLEN(?templateMotifCigarQ5SQI0MF_0313075) - STRLEN(REPLACE(?templateMotifCigarQ5SQI0MF_0313075, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionQ5SQI076) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_0313077, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_0313077) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_0313077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_0313077, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_0313077) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_0313077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0313078) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]K[FLM][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)F[LM][ARNDCQEGHILKMFPSTWYVBZJUOX]K', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionQ5SQI097 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SQI099 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SQI0MF_0313092 .
?templateMotifSequenceMatchRegionQ5SQI097 faldo:begin ?templateMotifSequenceMatchBeginQ5SQI098 .
?templateMotifSequenceMatchBeginQ5SQI098 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SQI093 ;
faldo:reference isoform:Q5SQI0-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SQI099 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03130103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SQI0MF_0313094 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03130102 .
?targetMotifMatchRegionMatchBeginMF_03130102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0313095 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03130103 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SQI0MF_0313092, 1, (STRLEN(?templateMotifCigarQ5SQI0MF_0313092) - STRLEN(REPLACE(?templateMotifCigarQ5SQI0MF_0313092, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionQ5SQI093) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_0313094, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_0313094) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_0313094, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_0313094, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_0313094) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_0313094, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0313095) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionQ5SQI0112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SQI0114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SQI0MF_03130107 .
?templateMotifSequenceMatchRegionQ5SQI0112 faldo:begin ?templateMotifSequenceMatchBeginQ5SQI0113 .
?templateMotifSequenceMatchBeginQ5SQI0113 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SQI0108 ;
faldo:reference isoform:Q5SQI0-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SQI0114 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03130118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SQI0MF_03130109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03130117 .
?targetMotifMatchRegionMatchBeginMF_03130117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03130110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03130118 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SQI0MF_03130107, 1, (STRLEN(?templateMotifCigarQ5SQI0MF_03130107) - STRLEN(REPLACE(?templateMotifCigarQ5SQI0MF_03130107, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ5SQI0108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_03130109, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_03130109) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_03130109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_03130109, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_03130109) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_03130109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_03130110) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionQ5SQI0127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SQI0129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SQI0MF_03130122 .
?templateMotifSequenceMatchRegionQ5SQI0127 faldo:begin ?templateMotifSequenceMatchBeginQ5SQI0128 .
?templateMotifSequenceMatchBeginQ5SQI0128 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SQI0123 ;
faldo:reference isoform:Q5SQI0-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SQI0129 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03130133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SQI0MF_03130124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03130132 .
?targetMotifMatchRegionMatchBeginMF_03130132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03130125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03130133 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SQI0MF_03130122, 1, (STRLEN(?templateMotifCigarQ5SQI0MF_03130122) - STRLEN(REPLACE(?templateMotifCigarQ5SQI0MF_03130122, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionQ5SQI0123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_03130124, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_03130124) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_03130124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_03130124, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_03130124) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_03130124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_03130125) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionQ5SQI0142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SQI0144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SQI0MF_03130137 .
?templateMotifSequenceMatchRegionQ5SQI0142 faldo:begin ?templateMotifSequenceMatchBeginQ5SQI0143 .
?templateMotifSequenceMatchBeginQ5SQI0143 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SQI0138 ;
faldo:reference isoform:Q5SQI0-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SQI0144 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03130148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SQI0MF_03130139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03130147 .
?targetMotifMatchRegionMatchBeginMF_03130147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03130140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03130148 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SQI0MF_03130137, 1, (STRLEN(?templateMotifCigarQ5SQI0MF_03130137) - STRLEN(REPLACE(?templateMotifCigarQ5SQI0MF_03130137, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionQ5SQI0138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_03130139, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_03130139) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_03130139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_03130139, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_03130139) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_03130139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_03130140) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionQ5SQI0157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SQI0159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SQI0MF_03130152 .
?templateMotifSequenceMatchRegionQ5SQI0157 faldo:begin ?templateMotifSequenceMatchBeginQ5SQI0158 .
?templateMotifSequenceMatchBeginQ5SQI0158 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SQI0153 ;
faldo:reference isoform:Q5SQI0-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SQI0159 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03130163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SQI0MF_03130154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03130162 .
?targetMotifMatchRegionMatchBeginMF_03130162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03130155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03130163 edam:has_input signature:MF_03130 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SQI0MF_03130152, 1, (STRLEN(?templateMotifCigarQ5SQI0MF_03130152) - STRLEN(REPLACE(?templateMotifCigarQ5SQI0MF_03130152, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionQ5SQI0153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_03130154, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_03130154) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_03130154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SQI0MF_03130154, 1, (STRLEN(?targetMotifMatchCigarQ5SQI0MF_03130154) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SQI0MF_03130154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_03130155) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs2t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case3) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case4) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a6')) AS ?name6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon167 {taxon:6237 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon167 .
})) .
BIND(?this AS ?case10) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_03130a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
FILTER (! (EXISTS {
VALUES ?supertaxon168 {taxon:10226 taxon:6040}
?thisOrganism rdfs:subClassOf+ ?supertaxon168 .
})) .
BIND(?this AS ?case13) .
}
}
"xsd:string |
