| http://purl.uniprot.org/unirules/MF_03131#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:833143 up:source unirule:MF_03131 .
_:833144 up:source unirule:MF_03131 .
_:833145 up:source unirule:MF_03131 .
_:833146 up:source unirule:MF_03131 .
_:833147 up:source unirule:MF_03131 .
_:833148 up:source unirule:MF_03131 .
_:833149 up:source unirule:MF_03131 .
_:833150 up:source unirule:MF_03131 .
_:833151 up:source unirule:MF_03131 .
_:833152 up:source unirule:MF_03131 .
_:833153 up:source unirule:MF_03131 .
_:833154 up:source unirule:MF_03131 .
_:833155 up:source unirule:MF_03131 .
_:833156 up:source unirule:MF_03131 .
_:833157 up:source unirule:MF_03131 .
_:833158 up:source unirule:MF_03131 .
_:833159 up:source unirule:MF_03131 .
_:833160 up:source unirule:MF_03131 .
_:833161 up:source unirule:MF_03131 .
_:833162 up:source unirule:MF_03131 .
_:833163 up:source unirule:MF_03131 .
_:833164 up:source unirule:MF_03131 .
_:833165 up:source unirule:MF_03131 .
_:833166 up:source unirule:MF_03131 .
_:833167 up:source unirule:MF_03131 .
_:833168 up:source unirule:MF_03131 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0000287 ,
GO:0006085 ,
GO:0008776 ,
GO:0016310 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.2.1' ;
up:fullName 'Probable acetate kinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Acetokinase' ;
rdf:type up:Structured_Name .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; acetyl-CoA biosynthesis; acetyl-CoA from acetate: step 1/2.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the acetokinase family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:30616 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:30616 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:30616 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:18420 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:18420 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:30616 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf ?molecule60 .
?molecule60 rdfs:label 'substrate' .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
_:833169 a rdf:Statement ;
up:attribution _:833143 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:833170 a rdf:Statement ;
up:attribution _:833144 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:833171 a rdf:Statement ;
up:attribution _:833145 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:833172 a rdf:Statement ;
up:attribution _:833146 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:833173 a rdf:Statement ;
up:attribution _:833147 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:833174 a rdf:Statement ;
up:attribution _:833148 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:833175 a rdf:Statement ;
up:attribution _:833149 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:833176 a rdf:Statement ;
up:attribution _:833150 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:833177 a rdf:Statement ;
up:attribution _:833151 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:833178 a rdf:Statement ;
up:attribution _:833152 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:833179 a rdf:Statement ;
up:attribution _:833153 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:833180 a rdf:Statement ;
up:attribution _:833154 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:833181 a rdf:Statement ;
up:attribution _:833155 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008776 .
_:833182 a rdf:Statement ;
up:attribution _:833156 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:833183 a rdf:Statement ;
up:attribution _:833157 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006085 .
_:833184 a rdf:Statement ;
up:attribution _:833158 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016310 .
_:833185 a rdf:Statement ;
up:source unirule:MF_03131 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:833186 a rdf:Statement ;
up:attribution _:833159 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:833187 a rdf:Statement ;
up:source unirule:MF_03131 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:833188 a rdf:Statement ;
up:attribution _:833160 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:833189 a rdf:Statement ;
up:source unirule:MF_03131 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:833190 a rdf:Statement ;
up:attribution _:833161 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:833191 a rdf:Statement ;
up:source unirule:MF_03131 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:833192 a rdf:Statement ;
up:attribution _:833162 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:833193 a rdf:Statement ;
up:source unirule:MF_03131 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:833194 a rdf:Statement ;
up:attribution _:833163 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:833195 a rdf:Statement ;
up:source unirule:MF_03131 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:833196 a rdf:Statement ;
up:attribution _:833164 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:833197 a rdf:Statement ;
up:source unirule:MF_03131 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:833198 a rdf:Statement ;
up:attribution _:833165 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:833199 a rdf:Statement ;
up:source unirule:MF_03131 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:833200 a rdf:Statement ;
up:attribution _:833166 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:833201 a rdf:Statement ;
up:source unirule:MF_03131 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:833202 a rdf:Statement ;
up:attribution _:833167 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:833203 a rdf:Statement ;
up:source unirule:MF_03131 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:833204 a rdf:Statement ;
up:attribution _:833168 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03131
#Rule MF_03131 Created by:? on:2012-08-21 Modified by:ipedruzz on:2024-05-24
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00020 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01882 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP3850280 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3850282 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38502MF_0002075 .
?templateMotifSequenceMatchRegionP3850280 faldo:begin ?templateMotifSequenceMatchBeginP3850281 .
?templateMotifSequenceMatchBeginP3850281 faldo:position ?templateMotifSequenceMatchBeginPositionP3850276 ;
faldo:reference isoform:P38502-1 .
?templateMotifSequenceProfileAlignmentOperationP3850282 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0002086 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38502MF_0002077 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0002085 .
?targetMotifMatchRegionMatchBeginMF_0002085 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0002078 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0002086 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_0002075, 1, (STRLEN(?templateMotifCigarP38502MF_0002075) - STRLEN(REPLACE(?templateMotifCigarP38502MF_0002075, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionP3850276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_0002077, 1, (STRLEN(?targetMotifMatchCigarP38502MF_0002077) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_0002077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_0002077, 1, (STRLEN(?targetMotifMatchCigarP38502MF_0002077) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_0002077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0002078) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_0002075, 1, (STRLEN(?templateMotifCigarP38502MF_0002075) - STRLEN(REPLACE(?templateMotifCigarP38502MF_0002075, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP3850276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_0002077, 1, (STRLEN(?targetMotifMatchCigarP38502MF_0002077) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_0002077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_0002077, 1, (STRLEN(?targetMotifMatchCigarP38502MF_0002077) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_0002077, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0002078) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionP3850297 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3850299 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38502MF_0002092 .
?templateMotifSequenceMatchRegionP3850297 faldo:begin ?templateMotifSequenceMatchBeginP3850298 .
?templateMotifSequenceMatchBeginP3850298 faldo:position ?templateMotifSequenceMatchBeginPositionP3850293 ;
faldo:reference isoform:P38502-1 .
?templateMotifSequenceProfileAlignmentOperationP3850299 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00020103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38502MF_0002094 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00020102 .
?targetMotifMatchRegionMatchBeginMF_00020102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0002095 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00020103 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_0002092, 1, (STRLEN(?templateMotifCigarP38502MF_0002092) - STRLEN(REPLACE(?templateMotifCigarP38502MF_0002092, CONCAT('^(?:-*[^-]){', STR(((283 - ?templateMotifSequenceMatchBeginPositionP3850293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_0002094, 1, (STRLEN(?targetMotifMatchCigarP38502MF_0002094) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_0002094, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_0002094, 1, (STRLEN(?targetMotifMatchCigarP38502MF_0002094) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_0002094, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0002095) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_0002092, 1, (STRLEN(?templateMotifCigarP38502MF_0002092) - STRLEN(REPLACE(?templateMotifCigarP38502MF_0002092, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionP3850293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_0002094, 1, (STRLEN(?targetMotifMatchCigarP38502MF_0002094) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_0002094, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_0002094, 1, (STRLEN(?targetMotifMatchCigarP38502MF_0002094) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_0002094, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0002095) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP38502114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38502116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38502MF_00020109 .
?templateMotifSequenceMatchRegionP38502114 faldo:begin ?templateMotifSequenceMatchBeginP38502115 .
?templateMotifSequenceMatchBeginP38502115 faldo:position ?templateMotifSequenceMatchBeginPositionP38502110 ;
faldo:reference isoform:P38502-1 .
?templateMotifSequenceProfileAlignmentOperationP38502116 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00020120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38502MF_00020111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00020119 .
?targetMotifMatchRegionMatchBeginMF_00020119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00020112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00020120 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_00020109, 1, (STRLEN(?templateMotifCigarP38502MF_00020109) - STRLEN(REPLACE(?templateMotifCigarP38502MF_00020109, CONCAT('^(?:-*[^-]){', STR(((331 - ?templateMotifSequenceMatchBeginPositionP38502110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_00020111, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020111) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_00020111, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020111) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00020112) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_00020109, 1, (STRLEN(?templateMotifCigarP38502MF_00020109) - STRLEN(REPLACE(?templateMotifCigarP38502MF_00020109, CONCAT('^(?:-*[^-]){', STR(((335 - ?templateMotifSequenceMatchBeginPositionP38502110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_00020111, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020111) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_00020111, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020111) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00020112) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER (REGEX('G[IVLM]GE[NH]', SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP38502131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38502133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38502MF_00020126 .
?templateMotifSequenceMatchRegionP38502131 faldo:begin ?templateMotifSequenceMatchBeginP38502132 .
?templateMotifSequenceMatchBeginP38502132 faldo:position ?templateMotifSequenceMatchBeginPositionP38502127 ;
faldo:reference isoform:P38502-1 .
?templateMotifSequenceProfileAlignmentOperationP38502133 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00020137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38502MF_00020128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00020136 .
?targetMotifMatchRegionMatchBeginMF_00020136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00020129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00020137 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_00020126, 1, (STRLEN(?templateMotifCigarP38502MF_00020126) - STRLEN(REPLACE(?templateMotifCigarP38502MF_00020126, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionP38502127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_00020128, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020128) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_00020128, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020128) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00020129) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP38502146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38502148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38502MF_00020141 .
?templateMotifSequenceMatchRegionP38502146 faldo:begin ?templateMotifSequenceMatchBeginP38502147 .
?templateMotifSequenceMatchBeginP38502147 faldo:position ?templateMotifSequenceMatchBeginPositionP38502142 ;
faldo:reference isoform:P38502-1 .
?templateMotifSequenceProfileAlignmentOperationP38502148 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00020152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38502MF_00020143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00020151 .
?targetMotifMatchRegionMatchBeginMF_00020151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00020144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00020152 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_00020141, 1, (STRLEN(?templateMotifCigarP38502MF_00020141) - STRLEN(REPLACE(?templateMotifCigarP38502MF_00020141, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionP38502142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_00020143, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020143) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_00020143, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020143) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_00020144) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP38502161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38502163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38502MF_00020156 .
?templateMotifSequenceMatchRegionP38502161 faldo:begin ?templateMotifSequenceMatchBeginP38502162 .
?templateMotifSequenceMatchBeginP38502162 faldo:position ?templateMotifSequenceMatchBeginPositionP38502157 ;
faldo:reference isoform:P38502-1 .
?templateMotifSequenceProfileAlignmentOperationP38502163 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00020167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38502MF_00020158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00020166 .
?targetMotifMatchRegionMatchBeginMF_00020166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00020159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00020167 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_00020156, 1, (STRLEN(?templateMotifCigarP38502MF_00020156) - STRLEN(REPLACE(?templateMotifCigarP38502MF_00020156, CONCAT('^(?:-*[^-]){', STR(((384 - ?templateMotifSequenceMatchBeginPositionP38502157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_00020158, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020158) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_00020158, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020158) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_00020159) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP38502176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38502178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38502MF_00020171 .
?templateMotifSequenceMatchRegionP38502176 faldo:begin ?templateMotifSequenceMatchBeginP38502177 .
?templateMotifSequenceMatchBeginP38502177 faldo:position ?templateMotifSequenceMatchBeginPositionP38502172 ;
faldo:reference isoform:P38502-1 .
?templateMotifSequenceProfileAlignmentOperationP38502178 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00020182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38502MF_00020173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00020181 .
?targetMotifMatchRegionMatchBeginMF_00020181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00020174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00020182 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_00020171, 1, (STRLEN(?templateMotifCigarP38502MF_00020171) - STRLEN(REPLACE(?templateMotifCigarP38502MF_00020171, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP38502172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_00020173, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020173) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_00020173, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020173) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_00020174) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t185) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionP38502191 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38502193 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38502MF_00020186 .
?templateMotifSequenceMatchRegionP38502191 faldo:begin ?templateMotifSequenceMatchBeginP38502192 .
?templateMotifSequenceMatchBeginP38502192 faldo:position ?templateMotifSequenceMatchBeginPositionP38502187 ;
faldo:reference isoform:P38502-1 .
?templateMotifSequenceProfileAlignmentOperationP38502193 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00020197 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38502MF_00020188 .
?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00020196 .
?targetMotifMatchRegionMatchBeginMF_00020196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00020189 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00020197 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_00020186, 1, (STRLEN(?templateMotifCigarP38502MF_00020186) - STRLEN(REPLACE(?templateMotifCigarP38502MF_00020186, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP38502187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_00020188, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020188) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_00020188, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020188) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_00020189) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionP38502206 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38502208 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38502MF_00020201 .
?templateMotifSequenceMatchRegionP38502206 faldo:begin ?templateMotifSequenceMatchBeginP38502207 .
?templateMotifSequenceMatchBeginP38502207 faldo:position ?templateMotifSequenceMatchBeginPositionP38502202 ;
faldo:reference isoform:P38502-1 .
?templateMotifSequenceProfileAlignmentOperationP38502208 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00020212 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38502MF_00020203 .
?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00020211 .
?targetMotifMatchRegionMatchBeginMF_00020211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00020204 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00020212 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_00020201, 1, (STRLEN(?templateMotifCigarP38502MF_00020201) - STRLEN(REPLACE(?templateMotifCigarP38502MF_00020201, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP38502202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_00020203, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020203) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_00020203, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020203) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_00020204) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t215) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionP38502221 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP38502223 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38502MF_00020216 .
?templateMotifSequenceMatchRegionP38502221 faldo:begin ?templateMotifSequenceMatchBeginP38502222 .
?templateMotifSequenceMatchBeginP38502222 faldo:position ?templateMotifSequenceMatchBeginPositionP38502217 ;
faldo:reference isoform:P38502-1 .
?templateMotifSequenceProfileAlignmentOperationP38502223 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00020227 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38502MF_00020218 .
?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00020226 .
?targetMotifMatchRegionMatchBeginMF_00020226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00020219 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00020227 edam:has_input signature:MF_00020 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38502MF_00020216, 1, (STRLEN(?templateMotifCigarP38502MF_00020216) - STRLEN(REPLACE(?templateMotifCigarP38502MF_00020216, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionP38502217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38502MF_00020218, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020218) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38502MF_00020218, 1, (STRLEN(?targetMotifMatchCigarP38502MF_00020218) - STRLEN(REPLACE(?targetMotifMatchCigarP38502MF_00020218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) .
BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_00020219) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t230) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03131a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
}
"xsd:string |
