| http://purl.uniprot.org/unirules/MF_03182#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:866336 up:source unirule:MF_03182 .
_:866337 up:source unirule:MF_03182 .
_:866338 up:source unirule:MF_03182 .
_:866339 up:source unirule:MF_03182 .
_:866340 up:source unirule:MF_03182 .
_:866341 up:source unirule:MF_03182 .
_:866342 up:source unirule:MF_03182 .
_:866343 up:source unirule:MF_03182 .
_:866344 up:source unirule:MF_03182 .
_:866345 up:source unirule:MF_03182 .
_:866346 up:source unirule:MF_03182 .
_:866347 up:source unirule:MF_03182 .
_:866348 up:source unirule:MF_03182 .
_:866349 up:source unirule:MF_03182 .
_:866350 up:source unirule:MF_03182 .
_:866351 up:source unirule:MF_03182 .
_:866352 up:source unirule:MF_03182 .
_:866353 up:source unirule:MF_03182 .
_:866354 up:source unirule:MF_03182 .
_:866355 up:source unirule:MF_03182 .
_:866356 up:source unirule:MF_03182 .
_:866357 up:source unirule:MF_03182 .
_:866358 up:source unirule:MF_03182 .
_:866359 up:source unirule:MF_03182 .
_:866360 up:source unirule:MF_03182 .
_:866361 up:source unirule:MF_03182 .
_:866362 up:source unirule:MF_03182 .
_:866363 up:source unirule:MF_03182 .
_:866364 up:source unirule:MF_03182 .
_:866365 up:source unirule:MF_03182 .
_:866366 up:source unirule:MF_03182 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0000288 ,
GO:0000289 ,
GO:0004535 ,
GO:0031251 ,
keyword:269 ,
keyword:378 ,
keyword:479 ,
keyword:507 ,
keyword:540 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.13.4' ;
up:fullName 'PAN2-PAN3 deadenylation complex catalytic subunit PAN2' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'PAB1P-dependent poly(A)-specific ribonuclease' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Poly(A)-nuclease deadenylation complex subunit 2' ;
up:shortName 'PAN deadenylation complex subunit 2' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'PAN2' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 up:cofactor chebi:60240 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 metal cations per subunit in the catalytic exonuclease domain' .
?annotation7 a up:Activity_Regulation_Annotation ;
rdfs:comment 'Positively regulated by the regulatory subunit PAN3.' .
?annotation8 a up:Domain_Annotation ;
rdfs:comment 'The linker, or PAN3 interaction domain (PID), between the WD40 repeats and the pseudo-UCH domain mediates interaction with PAN3.' .
?annotation9 a up:Domain_Annotation ;
rdfs:comment 'Contains a pseudo-UCH domain. This ubiquitin C-terminal hydrolase (UCH)-like or ubiquitin specific protease (USP)-like domain is predicted to be catalytically inactive because it lacks the active site catalytic triad characteristic of thiol proteases, with residues at the equivalent structural positions that are incompatible with catalysis, and it cannot bind ubiquitin. It functions as a structural scaffold for intra- and intermolecular interactions in the complex.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase C19 family. PAN2 subfamily.' .
?case12 up:classifiedWith GO:0000932 ,
GO:0005634 ,
GO:0010606 ,
keyword:539 .
?case15 up:classifiedWith GO:0005737 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Domain_Extent_Annotation ;
rdfs:comment 'USP' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Linker' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:60240 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:60240 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:60240 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:60240 .
_:866367 a rdf:Statement ;
up:attribution _:866336 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:866368 a rdf:Statement ;
up:attribution _:866337 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:866369 a rdf:Statement ;
up:attribution _:866338 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:866370 a rdf:Statement ;
up:attribution _:866339 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:866371 a rdf:Statement ;
up:attribution _:866340 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:866372 a rdf:Statement ;
up:attribution _:866341 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:866373 a rdf:Statement ;
up:attribution _:866342 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:866374 a rdf:Statement ;
up:attribution _:866343 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:866375 a rdf:Statement ;
up:attribution _:866344 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:866376 a rdf:Statement ;
up:attribution _:866345 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:866377 a rdf:Statement ;
up:attribution _:866346 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:866378 a rdf:Statement ;
up:attribution _:866347 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:269 .
_:866379 a rdf:Statement ;
up:attribution _:866348 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:866380 a rdf:Statement ;
up:attribution _:866349 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:507 .
_:866381 a rdf:Statement ;
up:attribution _:866350 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:866382 a rdf:Statement ;
up:attribution _:866351 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:866383 a rdf:Statement ;
up:attribution _:866352 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004535 .
_:866384 a rdf:Statement ;
up:attribution _:866353 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031251 .
_:866385 a rdf:Statement ;
up:attribution _:866354 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000288 .
_:866386 a rdf:Statement ;
up:attribution _:866355 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000289 .
_:866387 a rdf:Statement ;
up:attribution _:866356 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:866388 a rdf:Statement ;
up:attribution _:866357 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000932 .
_:866389 a rdf:Statement ;
up:attribution _:866358 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:866390 a rdf:Statement ;
up:attribution _:866359 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010606 .
_:866391 a rdf:Statement ;
up:attribution _:866360 ;
rdf:subject ?case15 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:866392 a rdf:Statement ;
up:source unirule:MF_03182 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:866393 a rdf:Statement ;
up:attribution _:866361 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:866394 a rdf:Statement ;
up:source unirule:MF_03182 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:866395 a rdf:Statement ;
up:attribution _:866362 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:866396 a rdf:Statement ;
up:source unirule:MF_03182 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:866397 a rdf:Statement ;
up:attribution _:866363 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:866398 a rdf:Statement ;
up:source unirule:MF_03182 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:866399 a rdf:Statement ;
up:attribution _:866364 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:866400 a rdf:Statement ;
up:source unirule:MF_03182 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:866401 a rdf:Statement ;
up:attribution _:866365 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:866402 a rdf:Statement ;
up:source unirule:MF_03182 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:866403 a rdf:Statement ;
up:attribution _:866366 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03182
#Rule MF_03182 Created by:? on:2014-02-24 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03182 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03182a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionP5301064 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5301066 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53010MF_0318259 .
?templateMotifSequenceMatchRegionP5301064 faldo:begin ?templateMotifSequenceMatchBeginP5301065 .
?templateMotifSequenceMatchBeginP5301065 faldo:position ?templateMotifSequenceMatchBeginPositionP5301060 ;
faldo:reference isoform:P53010-1 .
?templateMotifSequenceProfileAlignmentOperationP5301066 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0318270 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53010MF_0318261 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0318269 .
?targetMotifMatchRegionMatchBeginMF_0318269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0318262 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0318270 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53010MF_0318259, 1, (STRLEN(?templateMotifCigarP53010MF_0318259) - STRLEN(REPLACE(?templateMotifCigarP53010MF_0318259, CONCAT('^(?:-*[^-]){', STR(((474 - ?templateMotifSequenceMatchBeginPositionP5301060) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53010MF_0318261, 1, (STRLEN(?targetMotifMatchCigarP53010MF_0318261) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_0318261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53010MF_0318261, 1, (STRLEN(?targetMotifMatchCigarP53010MF_0318261) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_0318261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0318262) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53010MF_0318259, 1, (STRLEN(?templateMotifCigarP53010MF_0318259) - STRLEN(REPLACE(?templateMotifCigarP53010MF_0318259, CONCAT('^(?:-*[^-]){', STR(((855 - ?templateMotifSequenceMatchBeginPositionP5301060) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53010MF_0318261, 1, (STRLEN(?targetMotifMatchCigarP53010MF_0318261) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_0318261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53010MF_0318261, 1, (STRLEN(?targetMotifMatchCigarP53010MF_0318261) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_0318261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0318262) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionP5301081 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5301083 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53010MF_0318276 .
?templateMotifSequenceMatchRegionP5301081 faldo:begin ?templateMotifSequenceMatchBeginP5301082 .
?templateMotifSequenceMatchBeginP5301082 faldo:position ?templateMotifSequenceMatchBeginPositionP5301077 ;
faldo:reference isoform:P53010-1 .
?templateMotifSequenceProfileAlignmentOperationP5301083 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0318287 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53010MF_0318278 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0318286 .
?targetMotifMatchRegionMatchBeginMF_0318286 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0318279 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0318287 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53010MF_0318276, 1, (STRLEN(?templateMotifCigarP53010MF_0318276) - STRLEN(REPLACE(?templateMotifCigarP53010MF_0318276, CONCAT('^(?:-*[^-]){', STR(((337 - ?templateMotifSequenceMatchBeginPositionP5301077) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53010MF_0318278, 1, (STRLEN(?targetMotifMatchCigarP53010MF_0318278) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_0318278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53010MF_0318278, 1, (STRLEN(?targetMotifMatchCigarP53010MF_0318278) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_0318278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0318279) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53010MF_0318276, 1, (STRLEN(?templateMotifCigarP53010MF_0318276) - STRLEN(REPLACE(?templateMotifCigarP53010MF_0318276, CONCAT('^(?:-*[^-]){', STR(((473 - ?templateMotifSequenceMatchBeginPositionP5301077) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53010MF_0318278, 1, (STRLEN(?targetMotifMatchCigarP53010MF_0318278) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_0318278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53010MF_0318278, 1, (STRLEN(?targetMotifMatchCigarP53010MF_0318278) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_0318278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0318279) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((BOUND(?thisPositionOn29) && BOUND(?thisPositionOn30))) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP5301098 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53010100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53010MF_0318293 .
?templateMotifSequenceMatchRegionP5301098 faldo:begin ?templateMotifSequenceMatchBeginP5301099 .
?templateMotifSequenceMatchBeginP5301099 faldo:position ?templateMotifSequenceMatchBeginPositionP5301094 ;
faldo:reference isoform:P53010-1 .
?templateMotifSequenceProfileAlignmentOperationP53010100 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03182104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53010MF_0318295 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03182103 .
?targetMotifMatchRegionMatchBeginMF_03182103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0318296 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03182104 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53010MF_0318293, 1, (STRLEN(?templateMotifCigarP53010MF_0318293) - STRLEN(REPLACE(?templateMotifCigarP53010MF_0318293, CONCAT('^(?:-*[^-]){', STR(((910 - ?templateMotifSequenceMatchBeginPositionP5301094) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53010MF_0318295, 1, (STRLEN(?targetMotifMatchCigarP53010MF_0318295) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_0318295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53010MF_0318295, 1, (STRLEN(?targetMotifMatchCigarP53010MF_0318295) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_0318295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0318296) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP53010113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53010115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53010MF_03182108 .
?templateMotifSequenceMatchRegionP53010113 faldo:begin ?templateMotifSequenceMatchBeginP53010114 .
?templateMotifSequenceMatchBeginP53010114 faldo:position ?templateMotifSequenceMatchBeginPositionP53010109 ;
faldo:reference isoform:P53010-1 .
?templateMotifSequenceProfileAlignmentOperationP53010115 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03182119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53010MF_03182110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03182118 .
?targetMotifMatchRegionMatchBeginMF_03182118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03182111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03182119 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53010MF_03182108, 1, (STRLEN(?templateMotifCigarP53010MF_03182108) - STRLEN(REPLACE(?templateMotifCigarP53010MF_03182108, CONCAT('^(?:-*[^-]){', STR(((912 - ?templateMotifSequenceMatchBeginPositionP53010109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53010MF_03182110, 1, (STRLEN(?targetMotifMatchCigarP53010MF_03182110) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_03182110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53010MF_03182110, 1, (STRLEN(?targetMotifMatchCigarP53010MF_03182110) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_03182110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_03182111) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP53010128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53010130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53010MF_03182123 .
?templateMotifSequenceMatchRegionP53010128 faldo:begin ?templateMotifSequenceMatchBeginP53010129 .
?templateMotifSequenceMatchBeginP53010129 faldo:position ?templateMotifSequenceMatchBeginPositionP53010124 ;
faldo:reference isoform:P53010-1 .
?templateMotifSequenceProfileAlignmentOperationP53010130 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03182134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53010MF_03182125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03182133 .
?targetMotifMatchRegionMatchBeginMF_03182133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03182126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03182134 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53010MF_03182123, 1, (STRLEN(?templateMotifCigarP53010MF_03182123) - STRLEN(REPLACE(?templateMotifCigarP53010MF_03182123, CONCAT('^(?:-*[^-]){', STR(((1020 - ?templateMotifSequenceMatchBeginPositionP53010124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53010MF_03182125, 1, (STRLEN(?targetMotifMatchCigarP53010MF_03182125) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_03182125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53010MF_03182125, 1, (STRLEN(?targetMotifMatchCigarP53010MF_03182125) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_03182125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_03182126) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionP53010143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP53010145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP53010MF_03182138 .
?templateMotifSequenceMatchRegionP53010143 faldo:begin ?templateMotifSequenceMatchBeginP53010144 .
?templateMotifSequenceMatchBeginP53010144 faldo:position ?templateMotifSequenceMatchBeginPositionP53010139 ;
faldo:reference isoform:P53010-1 .
?templateMotifSequenceProfileAlignmentOperationP53010145 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03182149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP53010MF_03182140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03182148 .
?targetMotifMatchRegionMatchBeginMF_03182148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03182141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03182149 edam:has_input signature:MF_03182 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP53010MF_03182138, 1, (STRLEN(?templateMotifCigarP53010MF_03182138) - STRLEN(REPLACE(?templateMotifCigarP53010MF_03182138, CONCAT('^(?:-*[^-]){', STR(((1071 - ?templateMotifSequenceMatchBeginPositionP53010139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP53010MF_03182140, 1, (STRLEN(?targetMotifMatchCigarP53010MF_03182140) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_03182140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP53010MF_03182140, 1, (STRLEN(?targetMotifMatchCigarP53010MF_03182140) - STRLEN(REPLACE(?targetMotifMatchCigarP53010MF_03182140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_03182141) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03182a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33208 .
})) .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case16) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case17) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon153 {taxon:33208 taxon:4751}
?thisOrganism rdfs:subClassOf+ ?supertaxon153 .
})) .
BIND(?this AS ?case18) .
}
}
"xsd:string |
