| http://purl.uniprot.org/unirules/MF_03190#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:871656 up:source unirule:MF_03190 .
_:871657 up:source unirule:MF_03190 .
_:871658 up:source unirule:MF_03190 .
_:871659 up:source unirule:MF_03190 .
_:871660 up:source unirule:MF_03190 .
_:871661 up:source unirule:MF_03190 .
_:871662 up:source unirule:MF_03190 .
_:871663 up:source unirule:MF_03190 .
_:871664 up:source unirule:MF_03190 .
_:871665 up:source unirule:MF_03190 .
_:871666 up:source unirule:MF_03190 .
_:871667 up:source unirule:MF_03190 .
_:871668 up:source unirule:MF_03190 .
_:871669 up:source unirule:MF_03190 .
_:871670 up:source unirule:MF_03190 .
_:871671 up:source unirule:MF_03190 .
_:871672 up:source unirule:MF_03190 .
_:871673 up:source unirule:MF_03190 .
_:871674 up:source unirule:MF_03190 .
_:871675 up:source unirule:MF_03190 .
_:871676 up:source unirule:MF_03190 .
_:871677 up:source unirule:MF_03190 .
_:871678 up:source unirule:MF_03190 .
_:871679 up:source unirule:MF_03190 .
_:871680 up:source unirule:MF_03190 .
_:871681 up:source unirule:MF_03190 .
_:871682 up:source unirule:MF_03190 .
_:871683 up:source unirule:MF_03190 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0006744 ,
GO:0010420 ,
GO:0031314 ,
GO:0061542 ,
keyword:460 ,
keyword:472 ,
keyword:479 ,
keyword:489 ,
keyword:496 ,
keyword:808 ,
keyword:831 ,
keyword:949 ,
keyword:999 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Ubiquinone biosynthesis O-methyltransferase, mitochondrial' ;
rdf:type up:Structured_Name .
?name1 up:ecName '2.1.1.64' ;
up:fullName '3-demethylubiquinol 3-O-methyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:ecName '2.1.1.-' ;
up:fullName '3-demethylubiquinone 3-O-methyltransferase' ;
rdf:type up:Structured_Name .
?name3 up:ecName '2.1.1.114' ;
up:fullName 'Polyprenyldihydroxybenzoate methyltransferase' ;
rdf:type up:Structured_Name .
?annotation4 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; ubiquinone biosynthesis.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.' .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:59789 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:59789 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:59789 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:59789 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:18420 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:18420 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:18420 .
_:871684 a rdf:Statement ;
up:attribution _:871656 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:871685 a rdf:Statement ;
up:attribution _:871657 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:871686 a rdf:Statement ;
up:attribution _:871658 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:871687 a rdf:Statement ;
up:attribution _:871659 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:871688 a rdf:Statement ;
up:attribution _:871660 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:871689 a rdf:Statement ;
up:attribution _:871661 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:871690 a rdf:Statement ;
up:attribution _:871662 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:871691 a rdf:Statement ;
up:attribution _:871663 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:871692 a rdf:Statement ;
up:attribution _:871664 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:871693 a rdf:Statement ;
up:attribution _:871665 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:871694 a rdf:Statement ;
up:attribution _:871666 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:871695 a rdf:Statement ;
up:attribution _:871667 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:871696 a rdf:Statement ;
up:attribution _:871668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:871697 a rdf:Statement ;
up:attribution _:871669 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:999 .
_:871698 a rdf:Statement ;
up:attribution _:871670 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:871699 a rdf:Statement ;
up:attribution _:871671 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:871700 a rdf:Statement ;
up:attribution _:871672 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:831 .
_:871701 a rdf:Statement ;
up:attribution _:871673 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031314 .
_:871702 a rdf:Statement ;
up:attribution _:871674 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0061542 .
_:871703 a rdf:Statement ;
up:attribution _:871675 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010420 .
_:871704 a rdf:Statement ;
up:attribution _:871676 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006744 .
_:871705 a rdf:Statement ;
up:source unirule:MF_03190 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:871706 a rdf:Statement ;
up:attribution _:871677 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:871707 a rdf:Statement ;
up:source unirule:MF_03190 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:871708 a rdf:Statement ;
up:attribution _:871678 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:871709 a rdf:Statement ;
up:source unirule:MF_03190 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:871710 a rdf:Statement ;
up:attribution _:871679 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:871711 a rdf:Statement ;
up:source unirule:MF_03190 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:871712 a rdf:Statement ;
up:attribution _:871680 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:871713 a rdf:Statement ;
up:source unirule:MF_03190 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:871714 a rdf:Statement ;
up:attribution _:871681 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:871715 a rdf:Statement ;
up:source unirule:MF_03190 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:871716 a rdf:Statement ;
up:attribution _:871682 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:871717 a rdf:Statement ;
up:source unirule:MF_03190 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:871718 a rdf:Statement ;
up:attribution _:871683 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03190
#Rule MF_03190 Created by:? on:2015-03-11 Modified by:Catherine Rivoire on:2025-04-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00472 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03190a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP2768073 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2768075 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27680MF_0047268 .
?templateMotifSequenceMatchRegionP2768073 faldo:begin ?templateMotifSequenceMatchBeginP2768074 .
?templateMotifSequenceMatchBeginP2768074 faldo:position ?templateMotifSequenceMatchBeginPositionP2768069 ;
faldo:reference isoform:P27680-1 .
?templateMotifSequenceProfileAlignmentOperationP2768075 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0047279 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27680MF_0047270 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0047278 .
?targetMotifMatchRegionMatchBeginMF_0047278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0047271 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0047279 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27680MF_0047268, 1, (STRLEN(?templateMotifCigarP27680MF_0047268) - STRLEN(REPLACE(?templateMotifCigarP27680MF_0047268, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP2768069) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27680MF_0047270, 1, (STRLEN(?targetMotifMatchCigarP27680MF_0047270) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_0047270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27680MF_0047270, 1, (STRLEN(?targetMotifMatchCigarP27680MF_0047270) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_0047270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0047271) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER (BOUND(?thisPositionOn24)) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP2768088 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2768090 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27680MF_0047283 .
?templateMotifSequenceMatchRegionP2768088 faldo:begin ?templateMotifSequenceMatchBeginP2768089 .
?templateMotifSequenceMatchBeginP2768089 faldo:position ?templateMotifSequenceMatchBeginPositionP2768084 ;
faldo:reference isoform:P27680-1 .
?templateMotifSequenceProfileAlignmentOperationP2768090 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0047294 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27680MF_0047285 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0047293 .
?targetMotifMatchRegionMatchBeginMF_0047293 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0047286 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0047294 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27680MF_0047283, 1, (STRLEN(?templateMotifCigarP27680MF_0047283) - STRLEN(REPLACE(?templateMotifCigarP27680MF_0047283, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP2768084) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27680MF_0047285, 1, (STRLEN(?targetMotifMatchCigarP27680MF_0047285) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_0047285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27680MF_0047285, 1, (STRLEN(?targetMotifMatchCigarP27680MF_0047285) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_0047285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0047286) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP27680103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27680105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27680MF_0047298 .
?templateMotifSequenceMatchRegionP27680103 faldo:begin ?templateMotifSequenceMatchBeginP27680104 .
?templateMotifSequenceMatchBeginP27680104 faldo:position ?templateMotifSequenceMatchBeginPositionP2768099 ;
faldo:reference isoform:P27680-1 .
?templateMotifSequenceProfileAlignmentOperationP27680105 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00472109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27680MF_00472100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00472108 .
?targetMotifMatchRegionMatchBeginMF_00472108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00472101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00472109 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27680MF_0047298, 1, (STRLEN(?templateMotifCigarP27680MF_0047298) - STRLEN(REPLACE(?templateMotifCigarP27680MF_0047298, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP2768099) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27680MF_00472100, 1, (STRLEN(?targetMotifMatchCigarP27680MF_00472100) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_00472100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27680MF_00472100, 1, (STRLEN(?targetMotifMatchCigarP27680MF_00472100) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_00472100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_00472101) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP27680118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27680120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27680MF_00472113 .
?templateMotifSequenceMatchRegionP27680118 faldo:begin ?templateMotifSequenceMatchBeginP27680119 .
?templateMotifSequenceMatchBeginP27680119 faldo:position ?templateMotifSequenceMatchBeginPositionP27680114 ;
faldo:reference isoform:P27680-1 .
?templateMotifSequenceProfileAlignmentOperationP27680120 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00472124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27680MF_00472115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00472123 .
?targetMotifMatchRegionMatchBeginMF_00472123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00472116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00472124 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27680MF_00472113, 1, (STRLEN(?templateMotifCigarP27680MF_00472113) - STRLEN(REPLACE(?templateMotifCigarP27680MF_00472113, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP27680114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27680MF_00472115, 1, (STRLEN(?targetMotifMatchCigarP27680MF_00472115) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_00472115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27680MF_00472115, 1, (STRLEN(?targetMotifMatchCigarP27680MF_00472115) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_00472115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_00472116) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP27680133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27680135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27680MF_00472128 .
?templateMotifSequenceMatchRegionP27680133 faldo:begin ?templateMotifSequenceMatchBeginP27680134 .
?templateMotifSequenceMatchBeginP27680134 faldo:position ?templateMotifSequenceMatchBeginPositionP27680129 ;
faldo:reference isoform:P27680-1 .
?templateMotifSequenceProfileAlignmentOperationP27680135 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00472139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27680MF_00472130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00472138 .
?targetMotifMatchRegionMatchBeginMF_00472138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00472131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00472139 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27680MF_00472128, 1, (STRLEN(?templateMotifCigarP27680MF_00472128) - STRLEN(REPLACE(?templateMotifCigarP27680MF_00472128, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP27680129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27680MF_00472130, 1, (STRLEN(?targetMotifMatchCigarP27680MF_00472130) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_00472130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27680MF_00472130, 1, (STRLEN(?targetMotifMatchCigarP27680MF_00472130) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_00472130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00472131) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionP27680148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27680150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27680MF_00472143 .
?templateMotifSequenceMatchRegionP27680148 faldo:begin ?templateMotifSequenceMatchBeginP27680149 .
?templateMotifSequenceMatchBeginP27680149 faldo:position ?templateMotifSequenceMatchBeginPositionP27680144 ;
faldo:reference isoform:P27680-1 .
?templateMotifSequenceProfileAlignmentOperationP27680150 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00472154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27680MF_00472145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00472153 .
?targetMotifMatchRegionMatchBeginMF_00472153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00472146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00472154 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27680MF_00472143, 1, (STRLEN(?templateMotifCigarP27680MF_00472143) - STRLEN(REPLACE(?templateMotifCigarP27680MF_00472143, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP27680144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27680MF_00472145, 1, (STRLEN(?targetMotifMatchCigarP27680MF_00472145) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_00472145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27680MF_00472145, 1, (STRLEN(?targetMotifMatchCigarP27680MF_00472145) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_00472145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_00472146) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionP27680163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27680165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27680MF_00472158 .
?templateMotifSequenceMatchRegionP27680163 faldo:begin ?templateMotifSequenceMatchBeginP27680164 .
?templateMotifSequenceMatchBeginP27680164 faldo:position ?templateMotifSequenceMatchBeginPositionP27680159 ;
faldo:reference isoform:P27680-1 .
?templateMotifSequenceProfileAlignmentOperationP27680165 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00472169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27680MF_00472160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00472168 .
?targetMotifMatchRegionMatchBeginMF_00472168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00472161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00472169 edam:has_input signature:MF_00472 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27680MF_00472158, 1, (STRLEN(?templateMotifCigarP27680MF_00472158) - STRLEN(REPLACE(?templateMotifCigarP27680MF_00472158, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP27680159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27680MF_00472160, 1, (STRLEN(?targetMotifMatchCigarP27680MF_00472160) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_00472160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27680MF_00472160, 1, (STRLEN(?targetMotifMatchCigarP27680MF_00472160) - STRLEN(REPLACE(?targetMotifMatchCigarP27680MF_00472160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_00472161) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03190a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7214 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:147537 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon173 {taxon:40674 taxon:4895}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon173 .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon174 {taxon:7742 taxon:4751}
?thisOrganism rdfs:subClassOf+ ?supertaxon174 .
})) .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon175 {taxon:7742 taxon:4751 taxon:33090}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon175 .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:4930 .
})) .
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
}
BIND(?this AS ?case16) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:50557 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7214 .
})) .
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33083 .
}
BIND(?this AS ?case17) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon176 {taxon:4930 taxon:40674 taxon:4895}
?thisOrganism rdfs:subClassOf+ ?supertaxon176 .
})) .
BIND(?this AS ?case18) .
}
}
"xsd:string |
