| http://purl.uniprot.org/unirules/MF_03194#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:873521 up:source unirule:MF_03194 .
_:873522 up:source unirule:MF_03194 .
_:873523 up:source unirule:MF_03194 .
_:873524 up:source unirule:MF_03194 .
_:873525 up:source unirule:MF_03194 .
_:873526 up:source unirule:MF_03194 .
_:873527 up:source unirule:MF_03194 .
_:873528 up:source unirule:MF_03194 .
_:873529 up:source unirule:MF_03194 .
_:873530 up:source unirule:MF_03194 .
_:873531 up:source unirule:MF_03194 .
_:873532 up:source unirule:MF_03194 .
_:873533 up:source unirule:MF_03194 .
_:873534 up:source unirule:MF_03194 .
_:873535 up:source unirule:MF_03194 .
_:873536 up:source unirule:MF_03194 .
_:873537 up:source unirule:MF_03194 .
_:873538 up:source unirule:MF_03194 .
_:873539 up:source unirule:MF_03194 .
_:873540 up:source unirule:MF_03194 .
_:873541 up:source unirule:MF_03194 .
_:873542 up:source unirule:MF_03194 .
_:873543 up:source unirule:MF_03194 .
_:873544 up:source unirule:MF_03194 .
_:873545 up:source unirule:MF_03194 .
_:873546 up:source unirule:MF_03194 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0006744 ,
GO:0016709 ,
GO:0031314 ,
keyword:408 ,
keyword:472 ,
keyword:479 ,
keyword:496 ,
keyword:503 ,
keyword:560 ,
keyword:831 ,
keyword:999 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.14.99.60' ;
up:fullName '5-demethoxyubiquinone hydroxylase, mitochondrial' ;
up:shortName 'DMQ hydroxylase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Ubiquinone biosynthesis monooxygenase COQ7' ;
rdf:type up:Structured_Name .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:24875 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 iron ions per subunit.' .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; ubiquinone biosynthesis.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the COQ7 family.' .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:24875 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:24875 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:24875 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:24875 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:24875 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:24875 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:24875 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:24875 .
_:873547 a rdf:Statement ;
up:attribution _:873521 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:873548 a rdf:Statement ;
up:attribution _:873522 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:873549 a rdf:Statement ;
up:attribution _:873523 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:873550 a rdf:Statement ;
up:attribution _:873524 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:873551 a rdf:Statement ;
up:attribution _:873525 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:873552 a rdf:Statement ;
up:attribution _:873526 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:873553 a rdf:Statement ;
up:attribution _:873527 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:873554 a rdf:Statement ;
up:attribution _:873528 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:873555 a rdf:Statement ;
up:attribution _:873529 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:873556 a rdf:Statement ;
up:attribution _:873530 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:873557 a rdf:Statement ;
up:attribution _:873531 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:873558 a rdf:Statement ;
up:attribution _:873532 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:999 .
_:873559 a rdf:Statement ;
up:attribution _:873533 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:503 .
_:873560 a rdf:Statement ;
up:attribution _:873534 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:873561 a rdf:Statement ;
up:attribution _:873535 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:831 .
_:873562 a rdf:Statement ;
up:attribution _:873536 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031314 .
_:873563 a rdf:Statement ;
up:attribution _:873537 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016709 .
_:873564 a rdf:Statement ;
up:attribution _:873538 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006744 .
_:873565 a rdf:Statement ;
up:source unirule:MF_03194 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:873566 a rdf:Statement ;
up:attribution _:873539 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:873567 a rdf:Statement ;
up:source unirule:MF_03194 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:873568 a rdf:Statement ;
up:attribution _:873540 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:873569 a rdf:Statement ;
up:source unirule:MF_03194 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:873570 a rdf:Statement ;
up:attribution _:873541 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:873571 a rdf:Statement ;
up:source unirule:MF_03194 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:873572 a rdf:Statement ;
up:attribution _:873542 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:873573 a rdf:Statement ;
up:source unirule:MF_03194 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:873574 a rdf:Statement ;
up:attribution _:873543 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:873575 a rdf:Statement ;
up:source unirule:MF_03194 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:873576 a rdf:Statement ;
up:attribution _:873544 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:873577 a rdf:Statement ;
up:source unirule:MF_03194 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:873578 a rdf:Statement ;
up:attribution _:873545 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:873579 a rdf:Statement ;
up:source unirule:MF_03194 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:873580 a rdf:Statement ;
up:attribution _:873546 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03194
#Rule MF_03194 Created by:? on:2015-03-27 Modified by:Elisabeth Coudert on:2024-10-10
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01658 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03194a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionQ9I5R680 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R682 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_0165875 .
?templateMotifSequenceMatchRegionQ9I5R680 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R681 .
?templateMotifSequenceMatchBeginQ9I5R681 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R676 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R682 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0165886 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_0165877 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0165885 .
?targetMotifMatchRegionMatchBeginMF_0165885 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165878 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0165886 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_0165875, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_0165875) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_0165875, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionQ9I5R676) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165877, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165877) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165877, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165877, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165877) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165877, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0165878) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionQ9I5R695 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R697 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_0165890 .
?templateMotifSequenceMatchRegionQ9I5R695 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R696 .
?templateMotifSequenceMatchBeginQ9I5R696 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R691 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R697 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_0165892 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658100 .
?targetMotifMatchRegionMatchBeginMF_01658100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0165893 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658101 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_0165890, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_0165890) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_0165890, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionQ9I5R691) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165892, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165892) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165892, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_0165892, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_0165892) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_0165892, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0165893) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_01658105 .
?templateMotifSequenceMatchRegionQ9I5R6110 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6111 .
?templateMotifSequenceMatchBeginQ9I5R6111 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6106 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6112 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658115 .
?targetMotifMatchRegionMatchBeginMF_01658115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658116 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658105, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658105) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658105, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionQ9I5R6106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658107, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658107, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658107) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01658108) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_01658120 .
?templateMotifSequenceMatchRegionQ9I5R6125 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6126 .
?templateMotifSequenceMatchBeginQ9I5R6126 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6121 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6127 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658130 .
?targetMotifMatchRegionMatchBeginMF_01658130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658131 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658120, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658120) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658120, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionQ9I5R6121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658122, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658122) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658122, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658122) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01658123) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_01658135 .
?templateMotifSequenceMatchRegionQ9I5R6140 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6141 .
?templateMotifSequenceMatchBeginQ9I5R6141 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6136 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6142 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658145 .
?targetMotifMatchRegionMatchBeginMF_01658145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658146 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658135, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658135) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658135, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionQ9I5R6136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658137, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658137) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658137, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658137) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01658138) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_01658150 .
?templateMotifSequenceMatchRegionQ9I5R6155 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6156 .
?templateMotifSequenceMatchBeginQ9I5R6156 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6151 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6157 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658160 .
?targetMotifMatchRegionMatchBeginMF_01658160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658161 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658150, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658150) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658150, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionQ9I5R6151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658152, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658152) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658152, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658152) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01658153) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_01658165 .
?templateMotifSequenceMatchRegionQ9I5R6170 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6171 .
?templateMotifSequenceMatchBeginQ9I5R6171 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6166 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6172 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658175 .
?targetMotifMatchRegionMatchBeginMF_01658175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658176 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658165, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658165) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658165, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionQ9I5R6166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658167, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658167) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658167, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658167) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_01658168) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionQ9I5R6185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I5R6187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I5R6MF_01658180 .
?templateMotifSequenceMatchRegionQ9I5R6185 faldo:begin ?templateMotifSequenceMatchBeginQ9I5R6186 .
?templateMotifSequenceMatchBeginQ9I5R6186 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I5R6181 ;
faldo:reference isoform:Q9I5R6-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I5R6187 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01658191 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I5R6MF_01658182 .
?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01658190 .
?targetMotifMatchRegionMatchBeginMF_01658190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01658183 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01658191 edam:has_input signature:MF_01658 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I5R6MF_01658180, 1, (STRLEN(?templateMotifCigarQ9I5R6MF_01658180) - STRLEN(REPLACE(?templateMotifCigarQ9I5R6MF_01658180, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionQ9I5R6181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658182, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658182) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I5R6MF_01658182, 1, (STRLEN(?targetMotifMatchCigarQ9I5R6MF_01658182) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I5R6MF_01658182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_01658183) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03194a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7214 .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon195 {taxon:4751 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon195 .
})) .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon196 {taxon:33208 taxon:4930}
?thisOrganism rdfs:subClassOf+ ?supertaxon196 .
})) .
BIND(?this AS ?case16) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon197 {taxon:7742 taxon:4751 taxon:33090}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon197 .
BIND(?this AS ?case17) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:50557 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7214 .
})) .
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33083 .
}
BIND(?this AS ?case18) .
}
}
"xsd:string |
