| http://purl.uniprot.org/unirules/MF_03219#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:887454 up:source unirule:MF_03219 .
_:887455 up:source unirule:MF_03219 .
_:887456 up:source unirule:MF_03219 .
_:887457 up:source unirule:MF_03219 .
_:887458 up:source unirule:MF_03219 .
_:887459 up:source unirule:MF_03219 .
_:887460 up:source unirule:MF_03219 .
_:887461 up:source unirule:MF_03219 .
_:887462 up:source unirule:MF_03219 .
_:887463 up:source unirule:MF_03219 .
_:887464 up:source unirule:MF_03219 .
_:887465 up:source unirule:MF_03219 .
_:887466 up:source unirule:MF_03219 .
_:887467 up:source unirule:MF_03219 .
_:887468 up:source unirule:MF_03219 .
_:887469 up:source unirule:MF_03219 .
_:887470 up:source unirule:MF_03219 .
_:887471 up:source unirule:MF_03219 .
_:887472 up:source unirule:MF_03219 .
_:887473 up:source unirule:MF_03219 .
_:887474 up:source unirule:MF_03219 .
_:887475 up:source unirule:MF_03219 .
_:887476 up:source unirule:MF_03219 .
_:887477 up:source unirule:MF_03219 .
_:887478 up:source unirule:MF_03219 .
_:887479 up:source unirule:MF_03219 .
_:887480 up:source unirule:MF_03219 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0004775 ,
GO:0005524 ,
GO:0006099 ,
keyword:436 ,
keyword:496 ,
keyword:547 ,
keyword:67 ,
keyword:816 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.2.1.5' ;
up:fullName 'Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Succinyl-CoA synthetase beta chain' ;
up:shortName 'SCS-beta' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Heterodimer of an alpha and a beta subunit.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the succinate/malate CoA ligase beta subunit family.' .
?case10 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:18420 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:18420 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:30616 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf ?molecule36 .
?molecule36 rdfs:label 'substrate' .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:30616 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:30616 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf ?molecule58 .
?molecule58 rdfs:label 'substrate' .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
rdf:type up:Domain_Extent_Annotation ;
rdfs:comment 'ATP-grasp' .
?pfsb63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
_:887481 a rdf:Statement ;
up:attribution _:887454 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:887482 a rdf:Statement ;
up:attribution _:887455 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:887483 a rdf:Statement ;
up:attribution _:887456 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:887484 a rdf:Statement ;
up:attribution _:887457 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:887485 a rdf:Statement ;
up:attribution _:887458 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:887486 a rdf:Statement ;
up:attribution _:887459 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:887487 a rdf:Statement ;
up:attribution _:887460 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:887488 a rdf:Statement ;
up:attribution _:887461 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:887489 a rdf:Statement ;
up:attribution _:887462 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:887490 a rdf:Statement ;
up:attribution _:887463 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:887491 a rdf:Statement ;
up:attribution _:887464 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:887492 a rdf:Statement ;
up:attribution _:887465 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:887493 a rdf:Statement ;
up:attribution _:887466 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:816 .
_:887494 a rdf:Statement ;
up:attribution _:887467 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:887495 a rdf:Statement ;
up:attribution _:887468 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004775 .
_:887496 a rdf:Statement ;
up:attribution _:887469 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006099 .
_:887497 a rdf:Statement ;
up:attribution _:887470 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:887498 a rdf:Statement ;
up:attribution _:887471 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:887499 a rdf:Statement ;
up:attribution _:887472 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:887500 a rdf:Statement ;
up:source unirule:MF_03219 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:887501 a rdf:Statement ;
up:attribution _:887473 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:887502 a rdf:Statement ;
up:source unirule:MF_03219 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:887503 a rdf:Statement ;
up:attribution _:887474 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:887504 a rdf:Statement ;
up:source unirule:MF_03219 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:887505 a rdf:Statement ;
up:attribution _:887475 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:887506 a rdf:Statement ;
up:source unirule:MF_03219 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:887507 a rdf:Statement ;
up:attribution _:887476 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:887508 a rdf:Statement ;
up:source unirule:MF_03219 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:887509 a rdf:Statement ;
up:attribution _:887477 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:887510 a rdf:Statement ;
up:source unirule:MF_03219 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:887511 a rdf:Statement ;
up:attribution _:887478 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:887512 a rdf:Statement ;
up:source unirule:MF_03219 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:887513 a rdf:Statement ;
up:attribution _:887479 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:887514 a rdf:Statement ;
up:source unirule:MF_03219 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:887515 a rdf:Statement ;
up:attribution _:887480 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03219
#Rule MF_03219 Created by:? on:2016-10-20 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00558 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03221 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionP0A83672 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A83674 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_0055867 .
?templateMotifSequenceMatchRegionP0A83672 faldo:begin ?templateMotifSequenceMatchBeginP0A83673 .
?templateMotifSequenceMatchBeginP0A83673 faldo:position ?templateMotifSequenceMatchBeginPositionP0A83668 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A83674 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055878 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_0055869 .
?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055877 .
?targetMotifMatchRegionMatchBeginMF_0055877 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055870 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055878 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_0055867, 1, (STRLEN(?templateMotifCigarP0A836MF_0055867) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_0055867, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP0A83668) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_0055869, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055869) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055869, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_0055869, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055869) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055869, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0055870) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'N')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_0055867, 1, (STRLEN(?templateMotifCigarP0A836MF_0055867) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_0055867, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP0A83668) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_0055869, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055869) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055869, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_0055869, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055869) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055869, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0055870) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'D')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP0A83690 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A83692 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_0055885 .
?templateMotifSequenceMatchRegionP0A83690 faldo:begin ?templateMotifSequenceMatchBeginP0A83691 .
?templateMotifSequenceMatchBeginP0A83691 faldo:position ?templateMotifSequenceMatchBeginPositionP0A83686 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A83692 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055896 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_0055887 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055895 .
?targetMotifMatchRegionMatchBeginMF_0055895 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055888 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055896 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_0055885, 1, (STRLEN(?templateMotifCigarP0A836MF_0055885) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_0055885, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP0A83686) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_0055887, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055887) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055887, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_0055887, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055887) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055887, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0055888) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_0055885, 1, (STRLEN(?templateMotifCigarP0A836MF_0055885) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_0055885, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP0A83686) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_0055887, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055887) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055887, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_0055887, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055887) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055887, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0055888) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs2t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)) = 'GRG')) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP0A836107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558102 .
?templateMotifSequenceMatchRegionP0A836107 faldo:begin ?templateMotifSequenceMatchBeginP0A836108 .
?templateMotifSequenceMatchBeginP0A836108 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836103 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836109 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558112 .
?targetMotifMatchRegionMatchBeginMF_00558112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558113 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558102, 1, (STRLEN(?templateMotifCigarP0A836MF_00558102) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558102, CONCAT('^(?:-*[^-]){', STR(((321 - ?templateMotifSequenceMatchBeginPositionP0A836103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558104, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558104, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_00558105) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558102, 1, (STRLEN(?templateMotifCigarP0A836MF_00558102) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558102, CONCAT('^(?:-*[^-]){', STR(((323 - ?templateMotifSequenceMatchBeginPositionP0A836103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558104, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558104, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_00558105) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) .
FILTER (REGEX('GI[VM]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionP0A836124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558119 .
?templateMotifSequenceMatchRegionP0A836124 faldo:begin ?templateMotifSequenceMatchBeginP0A836125 .
?templateMotifSequenceMatchBeginP0A836125 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836120 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836126 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558129 .
?targetMotifMatchRegionMatchBeginMF_00558129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558130 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558119, 1, (STRLEN(?templateMotifCigarP0A836MF_00558119) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558119, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP0A836120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558121, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558121) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558121, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558121) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_00558122) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP0A836139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558134 .
?templateMotifSequenceMatchRegionP0A836139 faldo:begin ?templateMotifSequenceMatchBeginP0A836140 .
?templateMotifSequenceMatchBeginP0A836140 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836135 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836141 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558144 .
?targetMotifMatchRegionMatchBeginMF_00558144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558145 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558134, 1, (STRLEN(?templateMotifCigarP0A836MF_00558134) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558134, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP0A836135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558136, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558136) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558136, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558136) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_00558137) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs2t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP0A836154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558149 .
?templateMotifSequenceMatchRegionP0A836154 faldo:begin ?templateMotifSequenceMatchBeginP0A836155 .
?templateMotifSequenceMatchBeginP0A836155 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836150 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836156 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558159 .
?targetMotifMatchRegionMatchBeginMF_00558159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558160 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558149, 1, (STRLEN(?templateMotifCigarP0A836MF_00558149) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558149, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP0A836150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558151, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558151, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00558152) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs2t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP0A836169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558164 .
?templateMotifSequenceMatchRegionP0A836169 faldo:begin ?templateMotifSequenceMatchBeginP0A836170 .
?templateMotifSequenceMatchBeginP0A836170 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836165 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836171 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558174 .
?targetMotifMatchRegionMatchBeginMF_00558174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558175 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?this rdfs:seeAlso .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558164, 1, (STRLEN(?templateMotifCigarP0A836MF_00558164) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558164, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP0A836165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558166, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558166) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558166, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558166) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_00558167) - 1) AS ?thisPositionOn65) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558164, 1, (STRLEN(?templateMotifCigarP0A836MF_00558164) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558164, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionP0A836165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558166, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558166) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558166, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558166) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00558167) - 1) AS ?thisPositionOn66) .
BIND(?this AS ?pfs3t180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse64) .
FILTER ((BOUND(?thisPositionOn65) && BOUND(?thisPositionOn66))) .
BIND(URI(CONCAT(STR(?this), '#MF_03219a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag181) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag181, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
