| http://purl.uniprot.org/unirules/MF_04051#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:914605 up:source unirule:MF_04051 .
_:914606 up:source unirule:MF_04051 .
_:914607 up:source unirule:MF_04051 .
_:914608 up:source unirule:MF_04051 .
_:914609 up:source unirule:MF_04051 .
_:914610 up:source unirule:MF_04051 .
_:914611 up:source unirule:MF_04051 .
_:914612 up:source unirule:MF_04051 .
_:914613 up:source unirule:MF_04051 .
_:914614 up:source unirule:MF_04051 .
_:914615 up:source unirule:MF_04051 .
_:914616 up:source unirule:MF_04051 .
_:914617 up:source unirule:MF_04051 .
_:914618 up:source unirule:MF_04051 .
_:914619 up:source unirule:MF_04051 .
_:914620 up:source unirule:MF_04051 .
_:914621 up:source unirule:MF_04051 .
_:914622 up:source unirule:MF_04051 .
_:914623 up:source unirule:MF_04051 .
_:914624 up:source unirule:MF_04051 .
_:914625 up:source unirule:MF_04051 .
_:914626 up:source unirule:MF_04051 .
_:914627 up:source unirule:MF_04051 .
_:914628 up:source unirule:MF_04051 .
_:914629 up:source unirule:MF_04051 .
_:914630 up:source unirule:MF_04051 .
_:914631 up:source unirule:MF_04051 .
_:914632 up:source unirule:MF_04051 .
_:914633 up:source unirule:MF_04051 .
_:914634 up:source unirule:MF_04051 .
_:914635 up:source unirule:MF_04051 .
_:914636 up:source unirule:MF_04051 .
_:914637 up:source unirule:MF_04051 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0005198 ,
GO:0019028 ,
GO:0039623 ,
GO:0042025 ,
GO:0046718 ,
GO:0075521 ,
keyword:1048 ,
keyword:1148 ,
keyword:1160 ,
keyword:1176 ,
keyword:1177 ,
keyword:167 ,
keyword:426 ,
keyword:597 ,
keyword:945 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Hexon protein' ;
up:shortName 'CP-H' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Protein II' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'L3' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Major capsid protein that self-associates to form 240 hexon trimers, each in the shape of a hexagon, building most of the pseudo T=25 capsid. Assembled into trimeric units with the help of the chaperone shutoff protein. Transported by pre-protein VI to the nucleus where it associates with other structural proteins to form an empty capsid. Might be involved, through its interaction with host dyneins, in the intracellular microtubule-dependent transport of incoming viral capsid to the nucleus.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer. Interacts with the capsid vertex protein; this interaction binds the peripentonal hexons to the neighboring penton base. Interacts with the hexon-linking protein VIII; this interaction tethers the hexons surrounding the penton to those situated in the central plate of the facet. Interacts with the hexon-interlacing protein; this interaction lashes the hexons together. Interacts with host dyneins DYNC1LI1 and DYNC1I2; this interaction might be involved in intracellular microtubule-dependent transport of incoming viral capsid. Interacts with the shutoff protein; this interaction allows folding and formation of hexons trimers. Interacts with pre-protein VI; this interaction probably allows nuclear import of hexon trimers and possibly pre-capsid assembly.' .
?annotation5 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Forms the capsid icosahedric shell. Present in 720 copies per virion, assembled in 240 trimers' .
?annotation5li6 up:cellularComponent .
?annotation5li7 up:cellularComponent .
?annotation8 a up:Induction_Annotation ;
rdfs:comment 'Expressed in the late phase of the viral replicative cycle.' .
?annotation9 a up:Annotation ;
rdfs:comment 'All late proteins expressed from the major late promoter are produced by alternative splicing and alternative polyadenylation of the same gene giving rise to non-overlapping ORFs. A leader sequence is present in the N-terminus of all these mRNAs and is recognized by the viral shutoff protein to provide expression although conventional translation via ribosome scanning from the cap has been shut off in the host cell.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenoviridae hexon protein family.' .
?case11 up:classifiedWith keyword:7 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed; by host' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N-acetylalanine; by host' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Involved in interaction with pre-protein VI' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphotyrosine; by host' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Hexon protein' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Hexon protein' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
_:914638 a rdf:Statement ;
up:attribution _:914605 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:914639 a rdf:Statement ;
up:attribution _:914606 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:914640 a rdf:Statement ;
up:attribution _:914607 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:914641 a rdf:Statement ;
up:attribution _:914608 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:914642 a rdf:Statement ;
up:attribution _:914609 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:914643 a rdf:Statement ;
up:attribution _:914610 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:914644 a rdf:Statement ;
up:attribution _:914611 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:914645 a rdf:Statement ;
up:attribution _:914612 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:914646 a rdf:Statement ;
up:attribution _:914613 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:914647 a rdf:Statement ;
up:attribution _:914614 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:167 .
_:914648 a rdf:Statement ;
up:attribution _:914615 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1176 .
_:914649 a rdf:Statement ;
up:attribution _:914616 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:914650 a rdf:Statement ;
up:attribution _:914617 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:914651 a rdf:Statement ;
up:attribution _:914618 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:426 .
_:914652 a rdf:Statement ;
up:attribution _:914619 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1177 .
_:914653 a rdf:Statement ;
up:attribution _:914620 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:914654 a rdf:Statement ;
up:attribution _:914621 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1148 .
_:914655 a rdf:Statement ;
up:attribution _:914622 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:914656 a rdf:Statement ;
up:attribution _:914623 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:914657 a rdf:Statement ;
up:attribution _:914624 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:914658 a rdf:Statement ;
up:attribution _:914625 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039623 .
_:914659 a rdf:Statement ;
up:attribution _:914626 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019028 .
_:914660 a rdf:Statement ;
up:attribution _:914627 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005198 .
_:914661 a rdf:Statement ;
up:attribution _:914628 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0075521 .
_:914662 a rdf:Statement ;
up:attribution _:914629 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046718 .
_:914663 a rdf:Statement ;
up:attribution _:914630 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:914664 a rdf:Statement ;
up:source unirule:MF_04051 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:914665 a rdf:Statement ;
up:attribution _:914631 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:914666 a rdf:Statement ;
up:source unirule:MF_04051 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:914667 a rdf:Statement ;
up:attribution _:914632 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:914668 a rdf:Statement ;
up:source unirule:MF_04051 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:914669 a rdf:Statement ;
up:attribution _:914633 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:914670 a rdf:Statement ;
up:source unirule:MF_04051 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:914671 a rdf:Statement ;
up:attribution _:914634 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:914672 a rdf:Statement ;
up:source unirule:MF_04051 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:914673 a rdf:Statement ;
up:attribution _:914635 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:914674 a rdf:Statement ;
up:source unirule:MF_04051 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:914675 a rdf:Statement ;
up:attribution _:914636 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:914676 a rdf:Statement ;
up:source unirule:MF_04051 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:914677 a rdf:Statement ;
up:attribution _:914637 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04051
#Rule MF_04051 Created by:? on:2017-03-09 Modified by:Chantal Hulo on:2025-09-23
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04051 .
?thisOrganism rdfs:subClassOf+ taxon:10508 .
BIND(URI(CONCAT(STR(?this), '#MF_04051a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionP0413359 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0413361 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04133MF_0405154 .
?templateMotifSequenceMatchRegionP0413359 faldo:begin ?templateMotifSequenceMatchBeginP0413360 .
?templateMotifSequenceMatchBeginP0413360 faldo:position ?templateMotifSequenceMatchBeginPositionP0413355 ;
faldo:reference isoform:P04133-1 .
?templateMotifSequenceProfileAlignmentOperationP0413361 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0405165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04133MF_0405156 .
?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0405164 .
?targetMotifMatchRegionMatchBeginMF_0405164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0405157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0405165 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04133MF_0405154, 1, (STRLEN(?templateMotifCigarP04133MF_0405154) - STRLEN(REPLACE(?templateMotifCigarP04133MF_0405154, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP0413355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04133MF_0405156, 1, (STRLEN(?targetMotifMatchCigarP04133MF_0405156) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_0405156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04133MF_0405156, 1, (STRLEN(?targetMotifMatchCigarP04133MF_0405156) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_0405156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0405157) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'M')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionP0413374 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0413376 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04133MF_0405169 .
?templateMotifSequenceMatchRegionP0413374 faldo:begin ?templateMotifSequenceMatchBeginP0413375 .
?templateMotifSequenceMatchBeginP0413375 faldo:position ?templateMotifSequenceMatchBeginPositionP0413370 ;
faldo:reference isoform:P04133-1 .
?templateMotifSequenceProfileAlignmentOperationP0413376 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0405180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04133MF_0405171 .
?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0405179 .
?targetMotifMatchRegionMatchBeginMF_0405179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0405172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0405180 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagAcet) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04133MF_0405169, 1, (STRLEN(?templateMotifCigarP04133MF_0405169) - STRLEN(REPLACE(?templateMotifCigarP04133MF_0405169, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP0413370) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04133MF_0405171, 1, (STRLEN(?targetMotifMatchCigarP04133MF_0405171) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_0405171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04133MF_0405171, 1, (STRLEN(?targetMotifMatchCigarP04133MF_0405171) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_0405171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0405172) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs2t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP0413389 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0413391 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04133MF_0405184 .
?templateMotifSequenceMatchRegionP0413389 faldo:begin ?templateMotifSequenceMatchBeginP0413390 .
?templateMotifSequenceMatchBeginP0413390 faldo:position ?templateMotifSequenceMatchBeginPositionP0413385 ;
faldo:reference isoform:P04133-1 .
?templateMotifSequenceProfileAlignmentOperationP0413391 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0405195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04133MF_0405186 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0405194 .
?targetMotifMatchRegionMatchBeginMF_0405194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0405187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0405195 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04133MF_0405184, 1, (STRLEN(?templateMotifCigarP04133MF_0405184) - STRLEN(REPLACE(?templateMotifCigarP04133MF_0405184, CONCAT('^(?:-*[^-]){', STR(((777 - ?templateMotifSequenceMatchBeginPositionP0413385) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04133MF_0405186, 1, (STRLEN(?targetMotifMatchCigarP04133MF_0405186) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_0405186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04133MF_0405186, 1, (STRLEN(?targetMotifMatchCigarP04133MF_0405186) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_0405186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0405187) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs3t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP04133104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04133106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04133MF_0405199 .
?templateMotifSequenceMatchRegionP04133104 faldo:begin ?templateMotifSequenceMatchBeginP04133105 .
?templateMotifSequenceMatchBeginP04133105 faldo:position ?templateMotifSequenceMatchBeginPositionP04133100 ;
faldo:reference isoform:P04133-1 .
?templateMotifSequenceProfileAlignmentOperationP04133106 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04051110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04133MF_04051101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04051109 .
?targetMotifMatchRegionMatchBeginMF_04051109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04051102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04051110 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04133MF_0405199, 1, (STRLEN(?templateMotifCigarP04133MF_0405199) - STRLEN(REPLACE(?templateMotifCigarP04133MF_0405199, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP04133100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04133MF_04051101, 1, (STRLEN(?targetMotifMatchCigarP04133MF_04051101) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_04051101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04133MF_04051101, 1, (STRLEN(?targetMotifMatchCigarP04133MF_04051101) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_04051101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_04051102) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs3t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP04133119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04133121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04133MF_04051114 .
?templateMotifSequenceMatchRegionP04133119 faldo:begin ?templateMotifSequenceMatchBeginP04133120 .
?templateMotifSequenceMatchBeginP04133120 faldo:position ?templateMotifSequenceMatchBeginPositionP04133115 ;
faldo:reference isoform:P04133-1 .
?templateMotifSequenceProfileAlignmentOperationP04133121 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04051125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04133MF_04051116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04051124 .
?targetMotifMatchRegionMatchBeginMF_04051124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04051117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04051125 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04133MF_04051114, 1, (STRLEN(?templateMotifCigarP04133MF_04051114) - STRLEN(REPLACE(?templateMotifCigarP04133MF_04051114, CONCAT('^(?:-*[^-]){', STR(((940 - ?templateMotifSequenceMatchBeginPositionP04133115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04133MF_04051116, 1, (STRLEN(?targetMotifMatchCigarP04133MF_04051116) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_04051116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04133MF_04051116, 1, (STRLEN(?targetMotifMatchCigarP04133MF_04051116) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_04051116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_04051117) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs3t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP04133134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04133136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04133MF_04051129 .
?templateMotifSequenceMatchRegionP04133134 faldo:begin ?templateMotifSequenceMatchBeginP04133135 .
?templateMotifSequenceMatchBeginP04133135 faldo:position ?templateMotifSequenceMatchBeginPositionP04133130 ;
faldo:reference isoform:P04133-1 .
?templateMotifSequenceProfileAlignmentOperationP04133136 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04051140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04133MF_04051131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04051139 .
?targetMotifMatchRegionMatchBeginMF_04051139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04051132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04051140 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04133MF_04051129, 1, (STRLEN(?templateMotifCigarP04133MF_04051129) - STRLEN(REPLACE(?templateMotifCigarP04133MF_04051129, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP04133130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04133MF_04051131, 1, (STRLEN(?targetMotifMatchCigarP04133MF_04051131) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_04051131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04133MF_04051131, 1, (STRLEN(?targetMotifMatchCigarP04133MF_04051131) - STRLEN(REPLACE(?targetMotifMatchCigarP04133MF_04051131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_04051132) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn47) .
BIND(?this AS ?pfs4t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((BOUND(?thisPositionOn46) && BOUND(?thisPositionOn47))) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP04133149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP04133151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04133MF_04051144 .
?templateMotifSequenceMatchRegionP04133149 faldo:begin ?templateMotifSequenceMatchBeginP04133150 .
?templateMotifSequenceMatchBeginP04133150 faldo:position ?templateMotifSequenceMatchBeginPositionP04133145 ;
faldo:reference isoform:P04133-1 .
?templateMotifSequenceProfileAlignmentOperationP04133151 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04051155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04133MF_04051146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04051154 .
?targetMotifMatchRegionMatchBeginMF_04051154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04051147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04051155 edam:has_input signature:MF_04051 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn52) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn53) .
BIND(?this AS ?pfs5t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((BOUND(?thisPositionOn52) && BOUND(?thisPositionOn53))) .
BIND(URI(CONCAT(STR(?this), '#MF_04051a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag157) .
}
BIND(IF(BOUND(?tagAcet), ?caseWithTag157, ?UNBOUND_VARIABLE) AS ?case11) .
}
"xsd:string |
