| http://purl.uniprot.org/unirules/MF_04059#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:919097 up:source unirule:MF_04059 .
_:919098 up:source unirule:MF_04059 .
_:919099 up:source unirule:MF_04059 .
_:919100 up:source unirule:MF_04059 .
_:919101 up:source unirule:MF_04059 .
_:919102 up:source unirule:MF_04059 .
_:919103 up:source unirule:MF_04059 .
_:919104 up:source unirule:MF_04059 .
_:919105 up:source unirule:MF_04059 .
_:919106 up:source unirule:MF_04059 .
_:919107 up:source unirule:MF_04059 .
_:919108 up:source unirule:MF_04059 .
_:919109 up:source unirule:MF_04059 .
_:919110 up:source unirule:MF_04059 .
_:919111 up:source unirule:MF_04059 .
_:919112 up:source unirule:MF_04059 .
_:919113 up:source unirule:MF_04059 .
_:919114 up:source unirule:MF_04059 .
_:919115 up:source unirule:MF_04059 .
_:919116 up:source unirule:MF_04059 .
_:919117 up:source unirule:MF_04059 .
_:919118 up:source unirule:MF_04059 .
_:919119 up:source unirule:MF_04059 .
_:919120 up:source unirule:MF_04059 .
_:919121 up:source unirule:MF_04059 .
_:919122 up:source unirule:MF_04059 .
_:919123 up:source unirule:MF_04059 .
_:919124 up:source unirule:MF_04059 .
_:919125 up:source unirule:MF_04059 .
_:919126 up:source unirule:MF_04059 .
_:919127 up:source unirule:MF_04059 .
_:919128 up:source unirule:MF_04059 .
_:919129 up:source unirule:MF_04059 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ,
?name4 ;
up:annotation ?annotation6 ,
?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation14 ,
?annotation15 ,
?annotation16 ;
up:classifiedWith GO:0003677 ,
GO:0004197 ,
GO:0008234 ,
GO:0042025 ,
GO:0044423 ,
keyword:1015 ,
keyword:1048 ,
keyword:238 ,
keyword:378 ,
keyword:426 ,
keyword:645 ,
keyword:68 ,
keyword:788 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.22.39' ;
up:fullName 'Protease' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Adenain' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Adenovirus protease' ;
up:shortName 'AVP' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Adenovirus proteinase' ;
rdf:type up:Structured_Name .
?name4 up:fullName 'Endoprotease' ;
rdf:type up:Structured_Name .
?gene5 skos:prefLabel 'L3' .
?annotation6 a up:Function_Annotation ;
rdfs:comment 'Cleaves viral precursor proteins (pTP, pIIIa, pVI, pVII, pVIII, and pX) inside newly assembled particles giving rise to mature virions. Protease complexed to its cofactor slides along the viral DNA to specifically locate and cleave the viral precursors. Mature virions have a weakened organization compared to the unmature virions, thereby facilitating subsequent uncoating. Without maturation, the particle lacks infectivity and is unable to uncoat. Late in adenovirus infection, in the cytoplasm, may participate in the cytoskeleton destruction. Cleaves host cell cytoskeletal keratins K7 and K18.' .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:enzymeClass .
?annotation9 a up:Activity_Regulation_Annotation ;
rdfs:comment 'Requires DNA and protease cofactor for maximal activation. Inside nascent virions, becomes partially activated by binding to the viral DNA, allowing it to cleave the cofactor that binds to the protease and fully activates it. Actin, like the viral protease cofactor, seems to act as a cofactor in the cleavage of cytokeratin 18 and of actin itself.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with protease cofactor pVI-C; this interaction is necessary for protease activation.' .
?annotation11 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Present in about 10 copies per virion' .
?annotation11li12 up:cellularComponent .
?annotation11li13 up:cellularComponent .
?annotation14 a up:Induction_Annotation ;
rdfs:comment 'Expressed in the late phase of the viral replicative cycle.' .
?annotation15 a up:Annotation ;
rdfs:comment 'All late proteins expressed from the major late promoter are produced by alternative splicing and alternative polyadenylation of the same gene giving rise to non-overlapping ORFs. A leader sequence is present in the N-terminus of all these mRNAs and is recognized by the viral shutoff protein to provide expression although conventional translation via ribosome scanning from the cap has been shut off in the host cell.' .
?annotation16 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase C5 family.' .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Active_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Active_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Active_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by autolysis' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Interchain (with C-10 in cleaved protease cofactor pVI-C)' .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
_:919130 a rdf:Statement ;
up:attribution _:919097 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:919131 a rdf:Statement ;
up:attribution _:919098 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:919132 a rdf:Statement ;
up:attribution _:919099 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:919133 a rdf:Statement ;
up:attribution _:919100 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:919134 a rdf:Statement ;
up:attribution _:919101 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name4 .
_:919135 a rdf:Statement ;
up:attribution _:919102 ;
rdf:subject ?gene5 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene5 .
_:919136 a rdf:Statement ;
up:attribution _:919103 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:919137 a rdf:Statement ;
up:attribution _:919104 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:919138 a rdf:Statement ;
up:attribution _:919105 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:919139 a rdf:Statement ;
up:attribution _:919106 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:919140 a rdf:Statement ;
up:attribution _:919107 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:919141 a rdf:Statement ;
up:attribution _:919108 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:919142 a rdf:Statement ;
up:attribution _:919109 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:919143 a rdf:Statement ;
up:attribution _:919110 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:919144 a rdf:Statement ;
up:attribution _:919111 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:68 .
_:919145 a rdf:Statement ;
up:attribution _:919112 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:919146 a rdf:Statement ;
up:attribution _:919113 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:919147 a rdf:Statement ;
up:attribution _:919114 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:919148 a rdf:Statement ;
up:attribution _:919115 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:919149 a rdf:Statement ;
up:attribution _:919116 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:426 .
_:919150 a rdf:Statement ;
up:attribution _:919117 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:919151 a rdf:Statement ;
up:attribution _:919118 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:788 .
_:919152 a rdf:Statement ;
up:attribution _:919119 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:919153 a rdf:Statement ;
up:attribution _:919120 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:919154 a rdf:Statement ;
up:attribution _:919121 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044423 .
_:919155 a rdf:Statement ;
up:attribution _:919122 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004197 .
_:919156 a rdf:Statement ;
up:attribution _:919123 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008234 .
_:919157 a rdf:Statement ;
up:attribution _:919124 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:919158 a rdf:Statement ;
up:source unirule:MF_04059 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:919159 a rdf:Statement ;
up:attribution _:919125 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:919160 a rdf:Statement ;
up:source unirule:MF_04059 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:919161 a rdf:Statement ;
up:attribution _:919126 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:919162 a rdf:Statement ;
up:source unirule:MF_04059 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:919163 a rdf:Statement ;
up:attribution _:919127 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:919164 a rdf:Statement ;
up:source unirule:MF_04059 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:919165 a rdf:Statement ;
up:attribution _:919128 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:919166 a rdf:Statement ;
up:source unirule:MF_04059 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:919167 a rdf:Statement ;
up:attribution _:919129 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04059
#Rule MF_04059 Created by:? on:2017-03-16 Modified by:Catherine Rivoire on:2021-06-04
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04059 .
?thisOrganism rdfs:subClassOf+ taxon:10508 .
BIND(URI(CONCAT(STR(?this), '#MF_04059a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a15')) AS ?annotation15) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a16')) AS ?annotation16) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionP0325252 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0325254 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03252MF_0405947 .
?templateMotifSequenceMatchRegionP0325252 faldo:begin ?templateMotifSequenceMatchBeginP0325253 .
?templateMotifSequenceMatchBeginP0325253 faldo:position ?templateMotifSequenceMatchBeginPositionP0325248 ;
faldo:reference isoform:P03252-1 .
?templateMotifSequenceProfileAlignmentOperationP0325254 edam:has_input signature:MF_04059 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0405958 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03252MF_0405949 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0405957 .
?targetMotifMatchRegionMatchBeginMF_0405957 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0405950 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0405958 edam:has_input signature:MF_04059 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03252MF_0405947, 1, (STRLEN(?templateMotifCigarP03252MF_0405947) - STRLEN(REPLACE(?templateMotifCigarP03252MF_0405947, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP0325248) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03252MF_0405949, 1, (STRLEN(?targetMotifMatchCigarP03252MF_0405949) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_0405949, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03252MF_0405949, 1, (STRLEN(?targetMotifMatchCigarP03252MF_0405949) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_0405949, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0405950) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP0325267 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0325269 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03252MF_0405962 .
?templateMotifSequenceMatchRegionP0325267 faldo:begin ?templateMotifSequenceMatchBeginP0325268 .
?templateMotifSequenceMatchBeginP0325268 faldo:position ?templateMotifSequenceMatchBeginPositionP0325263 ;
faldo:reference isoform:P03252-1 .
?templateMotifSequenceProfileAlignmentOperationP0325269 edam:has_input signature:MF_04059 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0405973 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03252MF_0405964 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0405972 .
?targetMotifMatchRegionMatchBeginMF_0405972 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0405965 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0405973 edam:has_input signature:MF_04059 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03252MF_0405962, 1, (STRLEN(?templateMotifCigarP03252MF_0405962) - STRLEN(REPLACE(?templateMotifCigarP03252MF_0405962, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP0325263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03252MF_0405964, 1, (STRLEN(?targetMotifMatchCigarP03252MF_0405964) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_0405964, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03252MF_0405964, 1, (STRLEN(?targetMotifMatchCigarP03252MF_0405964) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_0405964, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0405965) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP0325282 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0325284 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03252MF_0405977 .
?templateMotifSequenceMatchRegionP0325282 faldo:begin ?templateMotifSequenceMatchBeginP0325283 .
?templateMotifSequenceMatchBeginP0325283 faldo:position ?templateMotifSequenceMatchBeginPositionP0325278 ;
faldo:reference isoform:P03252-1 .
?templateMotifSequenceProfileAlignmentOperationP0325284 edam:has_input signature:MF_04059 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0405988 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03252MF_0405979 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0405987 .
?targetMotifMatchRegionMatchBeginMF_0405987 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0405980 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0405988 edam:has_input signature:MF_04059 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03252MF_0405977, 1, (STRLEN(?templateMotifCigarP03252MF_0405977) - STRLEN(REPLACE(?templateMotifCigarP03252MF_0405977, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP0325278) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03252MF_0405979, 1, (STRLEN(?targetMotifMatchCigarP03252MF_0405979) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_0405979, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03252MF_0405979, 1, (STRLEN(?targetMotifMatchCigarP03252MF_0405979) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_0405979, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0405980) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionP0325297 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0325299 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03252MF_0405992 .
?templateMotifSequenceMatchRegionP0325297 faldo:begin ?templateMotifSequenceMatchBeginP0325298 .
?templateMotifSequenceMatchBeginP0325298 faldo:position ?templateMotifSequenceMatchBeginPositionP0325293 ;
faldo:reference isoform:P03252-1 .
?templateMotifSequenceProfileAlignmentOperationP0325299 edam:has_input signature:MF_04059 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04059103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03252MF_0405994 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04059102 .
?targetMotifMatchRegionMatchBeginMF_04059102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0405995 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04059103 edam:has_input signature:MF_04059 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03252MF_0405992, 1, (STRLEN(?templateMotifCigarP03252MF_0405992) - STRLEN(REPLACE(?templateMotifCigarP03252MF_0405992, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP0325293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03252MF_0405994, 1, (STRLEN(?targetMotifMatchCigarP03252MF_0405994) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_0405994, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03252MF_0405994, 1, (STRLEN(?targetMotifMatchCigarP03252MF_0405994) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_0405994, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0405995) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03252MF_0405992, 1, (STRLEN(?templateMotifCigarP03252MF_0405992) - STRLEN(REPLACE(?templateMotifCigarP03252MF_0405992, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP0325293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03252MF_0405994, 1, (STRLEN(?targetMotifMatchCigarP03252MF_0405994) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_0405994, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03252MF_0405994, 1, (STRLEN(?targetMotifMatchCigarP03252MF_0405994) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_0405994, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0405995) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP03252114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP03252116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP03252MF_04059109 .
?templateMotifSequenceMatchRegionP03252114 faldo:begin ?templateMotifSequenceMatchBeginP03252115 .
?templateMotifSequenceMatchBeginP03252115 faldo:position ?templateMotifSequenceMatchBeginPositionP03252110 ;
faldo:reference isoform:P03252-1 .
?templateMotifSequenceProfileAlignmentOperationP03252116 edam:has_input signature:MF_04059 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04059120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP03252MF_04059111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04059119 .
?targetMotifMatchRegionMatchBeginMF_04059119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04059112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04059120 edam:has_input signature:MF_04059 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP03252MF_04059109, 1, (STRLEN(?templateMotifCigarP03252MF_04059109) - STRLEN(REPLACE(?templateMotifCigarP03252MF_04059109, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP03252110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP03252MF_04059111, 1, (STRLEN(?targetMotifMatchCigarP03252MF_04059111) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_04059111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP03252MF_04059111, 1, (STRLEN(?targetMotifMatchCigarP03252MF_04059111) - STRLEN(REPLACE(?targetMotifMatchCigarP03252MF_04059111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_04059112) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04059a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
}
"xsd:string |
