| http://purl.uniprot.org/unirules/MF_04125#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:961511 up:source unirule:MF_04125 .
_:961512 up:source unirule:MF_04125 .
_:961513 up:source unirule:MF_04125 .
_:961514 up:source unirule:MF_04125 .
_:961515 up:source unirule:MF_04125 .
_:961516 up:source unirule:MF_04125 .
_:961517 up:source unirule:MF_04125 .
_:961518 up:source unirule:MF_04125 .
_:961519 up:source unirule:MF_04125 .
_:961520 up:source unirule:MF_04125 .
_:961521 up:source unirule:MF_04125 .
_:961522 up:source unirule:MF_04125 .
_:961523 up:source unirule:MF_04125 .
_:961524 up:source unirule:MF_04125 .
_:961525 up:source unirule:MF_04125 .
_:961526 up:source unirule:MF_04125 .
_:961527 up:source unirule:MF_04125 .
_:961528 up:source unirule:MF_04125 .
_:961529 up:source unirule:MF_04125 .
_:961530 up:source unirule:MF_04125 .
_:961531 up:source unirule:MF_04125 .
_:961532 up:source unirule:MF_04125 .
_:961533 up:source unirule:MF_04125 .
_:961534 up:fullName 'Outer capsid protein VP8*' ;
rdf:type up:Structured_Name .
_:961535 up:source unirule:MF_04125 .
_:961536 up:fullName 'Outer capsid protein VP5*' ;
rdf:type up:Structured_Name .
_:961537 up:source unirule:MF_04125 .
_:961538 up:fullName 'Outer capsid protein VP8*' ;
rdf:type up:Structured_Name .
_:961539 up:source unirule:MF_04125 .
_:961540 up:fullName 'Outer capsid protein VP5*' ;
rdf:type up:Structured_Name .
_:961541 up:source unirule:MF_04125 .
_:961542 up:source unirule:MF_04125 .
_:961543 up:source unirule:MF_04125 .
_:961544 up:source unirule:MF_04125 .
_:961545 up:source unirule:MF_04125 .
_:961546 up:source unirule:MF_04125 .
_:961547 up:source unirule:MF_04125 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0019062 ,
GO:0039624 ,
GO:0039665 ,
GO:0044168 ,
keyword:1032 ,
keyword:1038 ,
keyword:1043 ,
keyword:1152 ,
keyword:1160 ,
keyword:1161 ,
keyword:1162 ,
keyword:1173 ,
keyword:165 ,
keyword:167 ,
keyword:348 ,
keyword:472 ,
keyword:945 ,
keyword:946 ;
up:component ?namedpart9 ,
?namedpart10 ,
?namedpart11 ,
?namedpart12 .
?annotation0 a up:Function_Annotation ;
rdfs:comment 'Outer capsid protein VP4: Spike-forming protein that mediates virion attachment to the host epithelial cell receptors and plays a major role in cell penetration, determination of host range restriction and virulence. Rotavirus attachment and entry into the host cell probably involves multiple sequential contacts between the outer capsid proteins VP4 and VP7, and the cell receptors. It is subsequently lost, together with VP7, following virus entry into the host cell. Following entry into the host cell, low intracellular or intravesicular Ca(2+) concentration probably causes the calcium-stabilized VP7 trimers to dissociate from the virion. This step is probably necessary for the membrane-disrupting entry step and the release of VP4, which is locked onto the virion by VP7.' .
?annotation1 a up:Subcellular_Location_Annotation ;
rdfs:comment 'The outer layer contains 180 copies of VP4, grouped as 60 dimers. Immature double-layered particles assembled in the cytoplasm bud across the membrane of the endoplasmic reticulum, acquiring during this process a transient lipid membrane that is modified with the ER resident viral glycoproteins NSP4 and VP7; these enveloped particles also contain VP4. As the particles move towards the interior of the ER cisternae, the transient lipid membrane and the non-structural protein NSP4 are lost, while the virus surface proteins VP4 and VP7 rearrange to form the outermost virus protein layer, yielding mature infectious triple-layered particles' .
?annotation1li2 up:cellularComponent .
?annotation1li3 up:cellularComponent .
?annotation1li4 up:cellularComponent .
?annotation1li5 up:cellularComponent .
?annotation6 a up:Domain_Annotation ;
rdfs:comment 'Outer capsid protein VP4: The VP4 spike is divided into a foot, a stalk and body, and a head.' .
?annotation7 a up:PTM_Annotation ;
rdfs:comment 'Outer capsid protein VP4: Proteolytic cleavage by trypsin results in activation of VP4 functions and greatly increases infectivity. The penetration into the host cell is dependent on trypsin treatment of VP4. It produces two peptides, VP5* and VP8* that remain associated with the virion. Cleavage of VP4 by trypsin probably occurs in vivo in the lumen of the intestine prior to infection of enterocytes. Trypsin seems to be incorporated into the three-layered viral particles but remains inactive as long as the viral outer capsid is intact and would only be activated upon the solubilization of the latter.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the rotavirus VP4 family.' .
?namedpart9 up:recommendedName _:961534 .
?namedpart10 up:recommendedName _:961536 .
?namedpart11 up:recommendedName _:961538 .
?namedpart12 up:recommendedName _:961540 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Outer capsid protein VP4' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Outer capsid protein VP5*' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Outer capsid protein VP8*' .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?sam47 up:classifiedWith keyword:175 .
?coiledCoil48 faldo:begin ?coiledCoilb49 ;
faldo:end ?coiledCoile50 .
?coiledCoilb49 faldo:position ?coiledCoilbp51 .
?coiledCoile50 faldo:position ?coiledCoilep52 .
?keyword53 up:range ?coiledCoil48 .
_:961548 a rdf:Statement ;
up:attribution _:961511 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:961549 a rdf:Statement ;
up:attribution _:961512 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:961550 a rdf:Statement ;
up:attribution _:961513 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:961551 a rdf:Statement ;
up:attribution _:961514 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:961552 a rdf:Statement ;
up:attribution _:961515 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:961553 a rdf:Statement ;
up:attribution _:961516 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:167 .
_:961554 a rdf:Statement ;
up:attribution _:961517 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:165 .
_:961555 a rdf:Statement ;
up:attribution _:961518 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:348 .
_:961556 a rdf:Statement ;
up:attribution _:961519 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1032 .
_:961557 a rdf:Statement ;
up:attribution _:961520 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1038 .
_:961558 a rdf:Statement ;
up:attribution _:961521 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:961559 a rdf:Statement ;
up:attribution _:961522 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:961560 a rdf:Statement ;
up:attribution _:961523 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:961561 a rdf:Statement ;
up:attribution _:961524 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1152 .
_:961562 a rdf:Statement ;
up:attribution _:961525 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1161 .
_:961563 a rdf:Statement ;
up:attribution _:961526 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1162 .
_:961564 a rdf:Statement ;
up:attribution _:961527 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1173 .
_:961565 a rdf:Statement ;
up:attribution _:961528 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:961566 a rdf:Statement ;
up:attribution _:961529 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:961567 a rdf:Statement ;
up:attribution _:961530 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044168 .
_:961568 a rdf:Statement ;
up:attribution _:961531 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039624 .
_:961569 a rdf:Statement ;
up:attribution _:961532 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039665 .
_:961570 a rdf:Statement ;
up:attribution _:961533 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019062 .
_:961571 a rdf:Statement ;
up:attribution _:961535 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart9 .
_:961572 a rdf:Statement ;
up:attribution _:961537 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart10 .
_:961573 a rdf:Statement ;
up:attribution _:961539 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart11 .
_:961574 a rdf:Statement ;
up:attribution _:961541 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart12 .
_:961575 a rdf:Statement ;
up:source unirule:MF_04125 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:961576 a rdf:Statement ;
up:attribution _:961542 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:961577 a rdf:Statement ;
up:source unirule:MF_04125 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:961578 a rdf:Statement ;
up:attribution _:961543 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:961579 a rdf:Statement ;
up:source unirule:MF_04125 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:961580 a rdf:Statement ;
up:attribution _:961544 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:961581 a rdf:Statement ;
up:source unirule:MF_04125 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:961582 a rdf:Statement ;
up:attribution _:961545 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:961583 a rdf:Statement ;
up:source unirule:MF_04125 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:961584 a rdf:Statement ;
up:attribution _:961546 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:961585 a rdf:Statement ;
up:attribution _:961547 ;
rdf:subject ?sam47 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04125
#Rule MF_04125 Created by:? on:2018-03-28 Modified by:Catherine Rivoire on:2020-02-06
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04125 .
?thisOrganism rdfs:subClassOf+ taxon:10912 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_04132 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a9')) AS ?namedpart9) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a10')) AS ?namedpart10) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a11')) AS ?namedpart11) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a12')) AS ?namedpart12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionQ8204059 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8204061 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ82040MF_0412554 .
?templateMotifSequenceMatchRegionQ8204059 faldo:begin ?templateMotifSequenceMatchBeginQ8204060 .
?templateMotifSequenceMatchBeginQ8204060 faldo:position ?templateMotifSequenceMatchBeginPositionQ8204055 ;
faldo:reference isoform:Q82040-1 .
?templateMotifSequenceProfileAlignmentOperationQ8204061 edam:has_input signature:MF_04125 ;
rdf:type edam:operation_0300 .
?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0412565 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ82040MF_0412556 .
?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0412564 .
?targetMotifMatchRegionMatchBeginMF_0412564 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0412557 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0412565 edam:has_input signature:MF_04125 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagcleavage1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ82040MF_0412554, 1, (STRLEN(?templateMotifCigarQ82040MF_0412554) - STRLEN(REPLACE(?templateMotifCigarQ82040MF_0412554, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionQ8204055) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ82040MF_0412556, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_0412556) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_0412556, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ82040MF_0412556, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_0412556) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_0412556, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0412557) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ82040MF_0412554, 1, (STRLEN(?templateMotifCigarQ82040MF_0412554) - STRLEN(REPLACE(?templateMotifCigarQ82040MF_0412554, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionQ8204055) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ82040MF_0412556, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_0412556) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_0412556, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ82040MF_0412556, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_0412556) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_0412556, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0412557) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER (REGEX('[KR][DEANST]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionQ8204076 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8204078 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ82040MF_0412571 .
?templateMotifSequenceMatchRegionQ8204076 faldo:begin ?templateMotifSequenceMatchBeginQ8204077 .
?templateMotifSequenceMatchBeginQ8204077 faldo:position ?templateMotifSequenceMatchBeginPositionQ8204072 ;
faldo:reference isoform:Q82040-1 .
?templateMotifSequenceProfileAlignmentOperationQ8204078 edam:has_input signature:MF_04125 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0412582 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ82040MF_0412573 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0412581 .
?targetMotifMatchRegionMatchBeginMF_0412581 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0412574 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0412582 edam:has_input signature:MF_04125 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagcleavage2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ82040MF_0412571, 1, (STRLEN(?templateMotifCigarQ82040MF_0412571) - STRLEN(REPLACE(?templateMotifCigarQ82040MF_0412571, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionQ8204072) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ82040MF_0412573, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_0412573) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_0412573, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ82040MF_0412573, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_0412573) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_0412573, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0412574) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ82040MF_0412571, 1, (STRLEN(?templateMotifCigarQ82040MF_0412571) - STRLEN(REPLACE(?templateMotifCigarQ82040MF_0412571, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionQ8204072) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ82040MF_0412573, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_0412573) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_0412573, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ82040MF_0412573, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_0412573) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_0412573, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0412574) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs2t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER (REGEX('[KR][KATIVL]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionQ8204093 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8204095 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ82040MF_0412588 .
?templateMotifSequenceMatchRegionQ8204093 faldo:begin ?templateMotifSequenceMatchBeginQ8204094 .
?templateMotifSequenceMatchBeginQ8204094 faldo:position ?templateMotifSequenceMatchBeginPositionQ8204089 ;
faldo:reference isoform:Q82040-1 .
?templateMotifSequenceProfileAlignmentOperationQ8204095 edam:has_input signature:MF_04125 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0412599 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ82040MF_0412590 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0412598 .
?targetMotifMatchRegionMatchBeginMF_0412598 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0412591 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0412599 edam:has_input signature:MF_04125 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn33) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn34) .
BIND(?this AS ?pfs3t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((BOUND(?thisPositionOn33) && BOUND(?thisPositionOn34))) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionQ82040106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ82040108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ82040MF_04125101 .
?templateMotifSequenceMatchRegionQ82040106 faldo:begin ?templateMotifSequenceMatchBeginQ82040107 .
?templateMotifSequenceMatchBeginQ82040107 faldo:position ?templateMotifSequenceMatchBeginPositionQ82040102 ;
faldo:reference isoform:Q82040-1 .
?templateMotifSequenceProfileAlignmentOperationQ82040108 edam:has_input signature:MF_04125 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04125112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ82040MF_04125103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04125111 .
?targetMotifMatchRegionMatchBeginMF_04125111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04125104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04125112 edam:has_input signature:MF_04125 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ82040MF_04125101, 1, (STRLEN(?templateMotifCigarQ82040MF_04125101) - STRLEN(REPLACE(?templateMotifCigarQ82040MF_04125101, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionQ82040102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ82040MF_04125103, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_04125103) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_04125103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ82040MF_04125103, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_04125103) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_04125103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_04125104) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn40) .
BIND(?this AS ?pfs4t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((BOUND(?thisPositionOn39) && BOUND(?thisPositionOn40))) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionQ82040121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ82040123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ82040MF_04125116 .
?templateMotifSequenceMatchRegionQ82040121 faldo:begin ?templateMotifSequenceMatchBeginQ82040122 .
?templateMotifSequenceMatchBeginQ82040122 faldo:position ?templateMotifSequenceMatchBeginPositionQ82040117 ;
faldo:reference isoform:Q82040-1 .
?templateMotifSequenceProfileAlignmentOperationQ82040123 edam:has_input signature:MF_04125 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04125127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ82040MF_04125118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04125126 .
?targetMotifMatchRegionMatchBeginMF_04125126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04125119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04125127 edam:has_input signature:MF_04125 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn45) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ82040MF_04125116, 1, (STRLEN(?templateMotifCigarQ82040MF_04125116) - STRLEN(REPLACE(?templateMotifCigarQ82040MF_04125116, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionQ82040117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ82040MF_04125118, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_04125118) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_04125118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ82040MF_04125118, 1, (STRLEN(?targetMotifMatchCigarQ82040MF_04125118) - STRLEN(REPLACE(?targetMotifMatchCigarQ82040MF_04125118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_04125119) - 1) AS ?thisPositionOn46) .
BIND(?this AS ?pfs5t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((BOUND(?thisPositionOn45) && BOUND(?thisPositionOn46))) .
BIND(URI(CONCAT(STR(?this), '#MF_04125a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag131) .
}
BIND(IF((BOUND(?tagcleavage1) || BOUND(?tagcleavage2)), ?caseWithTag131, ?UNBOUND_VARIABLE) AS ?case13) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag132) .
}
BIND(IF((BOUND(?tagcleavage1) || BOUND(?tagcleavage2)), ?caseWithTag132, ?UNBOUND_VARIABLE) AS ?case14) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag133) .
}
BIND(IF((BOUND(?tagcleavage2) || BOUND(?tagcleavage1)), ?caseWithTag133, ?UNBOUND_VARIABLE) AS ?case15) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag134) .
}
BIND(IF((BOUND(?tagcleavage2) || BOUND(?tagcleavage1)), ?caseWithTag134, ?UNBOUND_VARIABLE) AS ?case16) .
OPTIONAL {
?this up:annotation ?samcc135 ;
up:sequence ?thisSequence .
?samcc135 up:range ?samccr136 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr136 faldo:begin ?samccb137 ;
faldo:end ?samcce138 .
?samccb137 faldo:position ?samccbp139 ;
faldo:reference ?thisSequence .
?samcce138 faldo:position ?samccep140 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam47) .
}
BIND(URI(CONCAT(STR(?this), '#MF_04125a53')) AS ?keyword53) .
}
"xsd:string |
