| http://purl.uniprot.org/unirules/MF_00119#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:48022 up:source unirule:MF_00119 .
_:48023 up:source unirule:MF_00119 .
_:48024 up:source unirule:MF_00119 .
_:48025 up:source unirule:MF_00119 .
_:48026 up:source unirule:MF_00119 .
_:48027 up:source unirule:MF_00119 .
_:48028 up:source unirule:MF_00119 .
_:48029 up:source unirule:MF_00119 .
_:48030 up:source unirule:MF_00119 .
_:48031 up:source unirule:MF_00119 .
_:48032 up:source unirule:MF_00119 .
_:48033 up:source unirule:MF_00119 .
_:48034 up:source unirule:MF_00119 .
_:48035 up:source unirule:MF_00119 .
_:48036 up:source unirule:MF_00119 .
_:48037 up:source unirule:MF_00119 .
_:48038 up:source unirule:MF_00119 .
_:48039 up:source unirule:MF_00119 .
_:48040 up:source unirule:MF_00119 .
_:48041 up:source unirule:MF_00119 .
_:48042 up:source unirule:MF_00119 .
_:48043 up:source unirule:MF_00119 .
_:48044 up:source unirule:MF_00119 .
_:48045 up:source unirule:MF_00119 .
_:48046 up:source unirule:MF_00119 .
_:48047 up:source unirule:MF_00119 .
_:48048 up:source unirule:MF_00119 .
_:48049 up:source unirule:MF_00119 .
_:48050 up:source unirule:MF_00119 .
_:48051 up:source unirule:MF_00119 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0003746 ,
GO:0005525 ,
keyword:342 ,
keyword:378 ,
keyword:396 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:648 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.6.5.3' ;
up:fullName 'Translation initiation factor 2 subunit gamma' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'aIF2-gamma' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'eIF-2-gamma' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'eif2g' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Heterotrimer composed of an alpha, a beta and a gamma chain.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily.' .
?case10 up:classifiedWith keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 ,
?annotation30 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29105 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:37565 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:37565 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:37565 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:18420 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:18420 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:18420 .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf chebi:18420 .
_:48052 a rdf:Statement ;
up:attribution _:48022 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:48053 a rdf:Statement ;
up:attribution _:48023 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:48054 a rdf:Statement ;
up:attribution _:48024 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:48055 a rdf:Statement ;
up:attribution _:48025 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:48056 a rdf:Statement ;
up:attribution _:48026 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:48057 a rdf:Statement ;
up:attribution _:48027 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:48058 a rdf:Statement ;
up:attribution _:48028 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:48059 a rdf:Statement ;
up:attribution _:48029 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:48060 a rdf:Statement ;
up:attribution _:48030 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:48061 a rdf:Statement ;
up:attribution _:48031 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:396 .
_:48062 a rdf:Statement ;
up:attribution _:48032 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:48063 a rdf:Statement ;
up:attribution _:48033 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:48064 a rdf:Statement ;
up:attribution _:48034 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:48065 a rdf:Statement ;
up:attribution _:48035 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:48066 a rdf:Statement ;
up:attribution _:48036 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:48067 a rdf:Statement ;
up:attribution _:48037 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:48068 a rdf:Statement ;
up:attribution _:48038 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005525 .
_:48069 a rdf:Statement ;
up:attribution _:48039 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003746 .
_:48070 a rdf:Statement ;
up:attribution _:48040 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:48071 a rdf:Statement ;
up:source unirule:MF_00119 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:48072 a rdf:Statement ;
up:attribution _:48041 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:48073 a rdf:Statement ;
up:source unirule:MF_00119 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:48074 a rdf:Statement ;
up:attribution _:48042 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:48075 a rdf:Statement ;
up:source unirule:MF_00119 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:48076 a rdf:Statement ;
up:attribution _:48043 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:48077 a rdf:Statement ;
up:source unirule:MF_00119 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:48078 a rdf:Statement ;
up:attribution _:48044 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:48079 a rdf:Statement ;
up:source unirule:MF_00119 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:48080 a rdf:Statement ;
up:attribution _:48045 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:48081 a rdf:Statement ;
up:source unirule:MF_00119 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:48082 a rdf:Statement ;
up:attribution _:48046 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:48083 a rdf:Statement ;
up:source unirule:MF_00119 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:48084 a rdf:Statement ;
up:attribution _:48047 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:48085 a rdf:Statement ;
up:source unirule:MF_00119 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:48086 a rdf:Statement ;
up:attribution _:48048 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:48087 a rdf:Statement ;
up:source unirule:MF_00119 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:48088 a rdf:Statement ;
up:attribution _:48049 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:48089 a rdf:Statement ;
up:source unirule:MF_00119 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:48090 a rdf:Statement ;
up:attribution _:48050 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:48091 a rdf:Statement ;
up:source unirule:MF_00119 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:48092 a rdf:Statement ;
up:attribution _:48051 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00119
#Rule MF_00119 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00119 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00119a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionQ980A590 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A592 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ980A5MF_0011985 .
?templateMotifSequenceMatchRegionQ980A590 faldo:begin ?templateMotifSequenceMatchBeginQ980A591 .
?templateMotifSequenceMatchBeginQ980A591 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A586 ;
faldo:reference isoform:Q980A5-1 .
?templateMotifSequenceProfileAlignmentOperationQ980A592 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0011996 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ980A5MF_0011987 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0011995 .
?targetMotifMatchRegionMatchBeginMF_0011995 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0011988 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0011996 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_0011985, 1, (STRLEN(?templateMotifCigarQ980A5MF_0011985) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_0011985, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionQ980A586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0011988) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_0011985, 1, (STRLEN(?templateMotifCigarQ980A5MF_0011985) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_0011985, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionQ980A586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0011988) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_0011985, 1, (STRLEN(?templateMotifCigarQ980A5MF_0011985) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_0011985, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionQ980A586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0011988) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_0011985, 1, (STRLEN(?templateMotifCigarQ980A5MF_0011985) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_0011985, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionQ980A586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_0011987, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_0011987) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_0011987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0011988) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'C')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionQ980A5114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ980A5MF_00119109 .
?templateMotifSequenceMatchRegionQ980A5114 faldo:begin ?templateMotifSequenceMatchBeginQ980A5115 .
?templateMotifSequenceMatchBeginQ980A5115 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5110 ;
faldo:reference isoform:Q980A5-1 .
?templateMotifSequenceProfileAlignmentOperationQ980A5116 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ980A5MF_00119111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119119 .
?targetMotifMatchRegionMatchBeginMF_00119119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00119120 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119109, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119109) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119109, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionQ980A5110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119111, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119111) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119111, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119111) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00119112) - 1) AS ?thisPositionOn41) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119109, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119109) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119109, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionQ980A5110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119111, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119111) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119111, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119111) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00119112) - 1) AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER (REGEX('DHGK[ST][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionQ980A5131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ980A5MF_00119126 .
?templateMotifSequenceMatchRegionQ980A5131 faldo:begin ?templateMotifSequenceMatchBeginQ980A5132 .
?templateMotifSequenceMatchBeginQ980A5132 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5127 ;
faldo:reference isoform:Q980A5-1 .
?templateMotifSequenceProfileAlignmentOperationQ980A5133 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ980A5MF_00119128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119136 .
?targetMotifMatchRegionMatchBeginMF_00119136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00119137 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119126, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119126) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119126, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionQ980A5127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119128, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119128) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119128, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119128) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00119129) - 1) AS ?thisPositionOn48) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119126, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119126) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119126, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionQ980A5127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119128, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119128) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119128, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119128) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00119129) - 1) AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER (REGEX('NK[VI][DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, (?thisPositionOn49 - ?thisPositionOn48)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionQ980A5148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ980A5MF_00119143 .
?templateMotifSequenceMatchRegionQ980A5148 faldo:begin ?templateMotifSequenceMatchBeginQ980A5149 .
?templateMotifSequenceMatchBeginQ980A5149 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5144 ;
faldo:reference isoform:Q980A5-1 .
?templateMotifSequenceProfileAlignmentOperationQ980A5150 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ980A5MF_00119145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119153 .
?targetMotifMatchRegionMatchBeginMF_00119153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00119154 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119143, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119143) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119143, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionQ980A5144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119145, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119145) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119145, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119145) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_00119146) - 1) AS ?thisPositionOn55) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119143, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119143) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119143, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionQ980A5144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119145, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119145) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119145, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119145) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_00119146) - 1) AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER (REGEX('SA[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn55, (?thisPositionOn56 - ?thisPositionOn55)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionQ980A5165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ980A5MF_00119160 .
?templateMotifSequenceMatchRegionQ980A5165 faldo:begin ?templateMotifSequenceMatchBeginQ980A5166 .
?templateMotifSequenceMatchBeginQ980A5166 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5161 ;
faldo:reference isoform:Q980A5-1 .
?templateMotifSequenceProfileAlignmentOperationQ980A5167 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ980A5MF_00119162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119170 .
?targetMotifMatchRegionMatchBeginMF_00119170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00119171 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119160, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119160) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119160, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionQ980A5161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119162, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119162) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119162, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119162) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_00119163) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs2t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionQ980A5180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ980A5MF_00119175 .
?templateMotifSequenceMatchRegionQ980A5180 faldo:begin ?templateMotifSequenceMatchBeginQ980A5181 .
?templateMotifSequenceMatchBeginQ980A5181 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5176 ;
faldo:reference isoform:Q980A5-1 .
?templateMotifSequenceProfileAlignmentOperationQ980A5182 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ980A5MF_00119177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119185 .
?targetMotifMatchRegionMatchBeginMF_00119185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00119186 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119175, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119175) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119175, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionQ980A5176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119177, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119177) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119177, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119177) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_00119178) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs2t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionQ980A5195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ980A5MF_00119190 .
?templateMotifSequenceMatchRegionQ980A5195 faldo:begin ?templateMotifSequenceMatchBeginQ980A5196 .
?templateMotifSequenceMatchBeginQ980A5196 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5191 ;
faldo:reference isoform:Q980A5-1 .
?templateMotifSequenceProfileAlignmentOperationQ980A5197 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ980A5MF_00119192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119200 .
?targetMotifMatchRegionMatchBeginMF_00119200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00119201 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119190, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119190) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119190, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionQ980A5191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119192, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119192) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119192, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119192) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_00119193) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs2t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionQ980A5210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ980A5212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ980A5MF_00119205 .
?templateMotifSequenceMatchRegionQ980A5210 faldo:begin ?templateMotifSequenceMatchBeginQ980A5211 .
?templateMotifSequenceMatchBeginQ980A5211 faldo:position ?templateMotifSequenceMatchBeginPositionQ980A5206 ;
faldo:reference isoform:Q980A5-1 .
?templateMotifSequenceProfileAlignmentOperationQ980A5212 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00119216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ980A5MF_00119207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00119215 .
?targetMotifMatchRegionMatchBeginMF_00119215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00119208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00119216 edam:has_input signature:MF_00119 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ980A5MF_00119205, 1, (STRLEN(?templateMotifCigarQ980A5MF_00119205) - STRLEN(REPLACE(?templateMotifCigarQ980A5MF_00119205, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionQ980A5206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119207, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119207) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ980A5MF_00119207, 1, (STRLEN(?targetMotifMatchCigarQ980A5MF_00119207) - STRLEN(REPLACE(?targetMotifMatchCigarQ980A5MF_00119207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_00119208) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs2t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00119a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag220) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag220, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
