| http://purl.uniprot.org/unirules/MF_00160#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:64086 up:source unirule:MF_00160 .
_:64087 up:source unirule:MF_00160 .
_:64088 up:source unirule:MF_00160 .
_:64089 up:source unirule:MF_00160 .
_:64090 up:source unirule:MF_00160 .
_:64091 up:source unirule:MF_00160 .
_:64092 up:source unirule:MF_00160 .
_:64093 up:source unirule:MF_00160 .
_:64094 up:source unirule:MF_00160 .
_:64095 up:source unirule:MF_00160 .
_:64096 up:source unirule:MF_00160 .
_:64097 up:source unirule:MF_00160 .
_:64098 up:source unirule:MF_00160 .
_:64099 up:source unirule:MF_00160 .
_:64100 up:source unirule:MF_00160 .
_:64101 up:source unirule:MF_00160 .
_:64102 up:source unirule:MF_00160 .
_:64103 up:source unirule:MF_00160 .
_:64104 up:source unirule:MF_00160 .
_:64105 up:source unirule:MF_00160 .
_:64106 up:source unirule:MF_00160 .
_:64107 up:source unirule:MF_00160 .
_:64108 up:source unirule:MF_00160 .
_:64109 up:source unirule:MF_00160 .
_:64110 up:source unirule:MF_00160 .
_:64111 up:source unirule:MF_00160 .
_:64112 up:source unirule:MF_00160 .
_:64113 up:source unirule:MF_00160 .
_:64114 up:source unirule:MF_00160 .
_:64115 up:source unirule:MF_00160 .
_:64116 up:source unirule:MF_00160 .
_:64117 up:source unirule:MF_00160 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation13 ;
up:classifiedWith GO:0004648 ,
GO:0005737 ,
GO:0006564 ,
GO:0030170 ,
keyword:28 ,
keyword:32 ,
keyword:663 ,
keyword:718 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.6.1.52' ;
up:fullName 'Phosphoserine aminotransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Phosphohydroxythreonine aminotransferase' ;
up:shortName 'PSAT' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'serC' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 pyridoxal phosphate per subunit.' .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 2/3.' .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation11 a up:Subcellular_Location_Annotation .
?annotation11li12 up:cellularComponent .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.' .
?case14 up:classifiedWith GO:0008615 ,
keyword:664 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:597326 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:597326 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29985 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:29985 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:597326 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:597326 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:597326 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:597326 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
_:64118 a rdf:Statement ;
up:attribution _:64086 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:64119 a rdf:Statement ;
up:attribution _:64087 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:64120 a rdf:Statement ;
up:attribution _:64088 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:64121 a rdf:Statement ;
up:attribution _:64089 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:64122 a rdf:Statement ;
up:attribution _:64090 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:64123 a rdf:Statement ;
up:attribution _:64091 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:64124 a rdf:Statement ;
up:attribution _:64092 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:64125 a rdf:Statement ;
up:attribution _:64093 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:64126 a rdf:Statement ;
up:attribution _:64094 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:64127 a rdf:Statement ;
up:attribution _:64095 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:64128 a rdf:Statement ;
up:attribution _:64096 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:64129 a rdf:Statement ;
up:attribution _:64097 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:64130 a rdf:Statement ;
up:attribution _:64098 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:64131 a rdf:Statement ;
up:attribution _:64099 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:718 .
_:64132 a rdf:Statement ;
up:attribution _:64100 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:64133 a rdf:Statement ;
up:attribution _:64101 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:32 .
_:64134 a rdf:Statement ;
up:attribution _:64102 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:64135 a rdf:Statement ;
up:attribution _:64103 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004648 .
_:64136 a rdf:Statement ;
up:attribution _:64104 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030170 .
_:64137 a rdf:Statement ;
up:attribution _:64105 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006564 .
_:64138 a rdf:Statement ;
up:attribution _:64106 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:64139 a rdf:Statement ;
up:attribution _:64107 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:664 .
_:64140 a rdf:Statement ;
up:attribution _:64108 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008615 .
_:64141 a rdf:Statement ;
up:source unirule:MF_00160 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:64142 a rdf:Statement ;
up:attribution _:64109 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:64143 a rdf:Statement ;
up:source unirule:MF_00160 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:64144 a rdf:Statement ;
up:attribution _:64110 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:64145 a rdf:Statement ;
up:source unirule:MF_00160 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:64146 a rdf:Statement ;
up:attribution _:64111 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:64147 a rdf:Statement ;
up:source unirule:MF_00160 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:64148 a rdf:Statement ;
up:attribution _:64112 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:64149 a rdf:Statement ;
up:source unirule:MF_00160 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:64150 a rdf:Statement ;
up:attribution _:64113 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:64151 a rdf:Statement ;
up:source unirule:MF_00160 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:64152 a rdf:Statement ;
up:attribution _:64114 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:64153 a rdf:Statement ;
up:source unirule:MF_00160 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:64154 a rdf:Statement ;
up:attribution _:64115 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:64155 a rdf:Statement ;
up:source unirule:MF_00160 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:64156 a rdf:Statement ;
up:attribution _:64116 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:64157 a rdf:Statement ;
up:source unirule:MF_00160 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:64158 a rdf:Statement ;
up:attribution _:64117 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00160
#Rule MF_00160 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon77 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00160 .
?thisOrganism rdfs:subClassOf+ ?supertaxon77 .
BIND(URI(CONCAT(STR(?this), '#MF_00160a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionP2372183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2372185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23721MF_0016078 .
?templateMotifSequenceMatchRegionP2372183 faldo:begin ?templateMotifSequenceMatchBeginP2372184 .
?templateMotifSequenceMatchBeginP2372184 faldo:position ?templateMotifSequenceMatchBeginPositionP2372179 ;
faldo:reference isoform:P23721-1 .
?templateMotifSequenceProfileAlignmentOperationP2372185 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0016089 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23721MF_0016080 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0016088 .
?targetMotifMatchRegionMatchBeginMF_0016088 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0016081 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0016089 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_0016078, 1, (STRLEN(?templateMotifCigarP23721MF_0016078) - STRLEN(REPLACE(?templateMotifCigarP23721MF_0016078, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP2372179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_0016080, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016080) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_0016080, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016080) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0016081) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_0016078, 1, (STRLEN(?templateMotifCigarP23721MF_0016078) - STRLEN(REPLACE(?templateMotifCigarP23721MF_0016078, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP2372179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_0016080, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016080) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_0016080, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016080) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0016081) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[GA][RST]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP23721100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23721MF_0016095 .
?templateMotifSequenceMatchRegionP23721100 faldo:begin ?templateMotifSequenceMatchBeginP23721101 .
?templateMotifSequenceMatchBeginP23721101 faldo:position ?templateMotifSequenceMatchBeginPositionP2372196 ;
faldo:reference isoform:P23721-1 .
?templateMotifSequenceProfileAlignmentOperationP23721102 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23721MF_0016097 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160105 .
?targetMotifMatchRegionMatchBeginMF_00160105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0016098 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00160106 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_0016095, 1, (STRLEN(?templateMotifCigarP23721MF_0016095) - STRLEN(REPLACE(?templateMotifCigarP23721MF_0016095, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionP2372196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_0016097, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016097) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_0016097, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016097) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0016098) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_0016095, 1, (STRLEN(?templateMotifCigarP23721MF_0016095) - STRLEN(REPLACE(?templateMotifCigarP23721MF_0016095, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP2372196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_0016097, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016097) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_0016097, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016097) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0016098) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)) = 'NT')) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP23721117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23721MF_00160112 .
?templateMotifSequenceMatchRegionP23721117 faldo:begin ?templateMotifSequenceMatchBeginP23721118 .
?templateMotifSequenceMatchBeginP23721118 faldo:position ?templateMotifSequenceMatchBeginPositionP23721113 ;
faldo:reference isoform:P23721-1 .
?templateMotifSequenceProfileAlignmentOperationP23721119 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23721MF_00160114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160122 .
?targetMotifMatchRegionMatchBeginMF_00160122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00160123 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160112, 1, (STRLEN(?templateMotifCigarP23721MF_00160112) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160112, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP23721113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160114, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160114) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160114, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160114) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_00160115) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP23721132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23721MF_00160127 .
?templateMotifSequenceMatchRegionP23721132 faldo:begin ?templateMotifSequenceMatchBeginP23721133 .
?templateMotifSequenceMatchBeginP23721133 faldo:position ?templateMotifSequenceMatchBeginPositionP23721128 ;
faldo:reference isoform:P23721-1 .
?templateMotifSequenceProfileAlignmentOperationP23721134 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23721MF_00160129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160137 .
?targetMotifMatchRegionMatchBeginMF_00160137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00160138 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160127, 1, (STRLEN(?templateMotifCigarP23721MF_00160127) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160127, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP23721128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160129, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160129) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160129, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160129) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_00160130) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP23721147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23721MF_00160142 .
?templateMotifSequenceMatchRegionP23721147 faldo:begin ?templateMotifSequenceMatchBeginP23721148 .
?templateMotifSequenceMatchBeginP23721148 faldo:position ?templateMotifSequenceMatchBeginPositionP23721143 ;
faldo:reference isoform:P23721-1 .
?templateMotifSequenceProfileAlignmentOperationP23721149 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23721MF_00160144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160152 .
?targetMotifMatchRegionMatchBeginMF_00160152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00160153 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160142, 1, (STRLEN(?templateMotifCigarP23721MF_00160142) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160142, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP23721143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160144, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160144) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160144, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160144) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_00160145) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER (REGEX('[WF]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP23721162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23721MF_00160157 .
?templateMotifSequenceMatchRegionP23721162 faldo:begin ?templateMotifSequenceMatchBeginP23721163 .
?templateMotifSequenceMatchBeginP23721163 faldo:position ?templateMotifSequenceMatchBeginPositionP23721158 ;
faldo:reference isoform:P23721-1 .
?templateMotifSequenceProfileAlignmentOperationP23721164 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23721MF_00160159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160167 .
?targetMotifMatchRegionMatchBeginMF_00160167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00160168 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160157, 1, (STRLEN(?templateMotifCigarP23721MF_00160157) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160157, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP23721158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160159, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160159) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160159, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160159) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_00160160) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionP23721177 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721179 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23721MF_00160172 .
?templateMotifSequenceMatchRegionP23721177 faldo:begin ?templateMotifSequenceMatchBeginP23721178 .
?templateMotifSequenceMatchBeginP23721178 faldo:position ?templateMotifSequenceMatchBeginPositionP23721173 ;
faldo:reference isoform:P23721-1 .
?templateMotifSequenceProfileAlignmentOperationP23721179 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23721MF_00160174 .
?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160182 .
?targetMotifMatchRegionMatchBeginMF_00160182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00160183 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160172, 1, (STRLEN(?templateMotifCigarP23721MF_00160172) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160172, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP23721173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160174, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160174) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160174, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160174) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_00160175) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionP23721192 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721194 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23721MF_00160187 .
?templateMotifSequenceMatchRegionP23721192 faldo:begin ?templateMotifSequenceMatchBeginP23721193 .
?templateMotifSequenceMatchBeginP23721193 faldo:position ?templateMotifSequenceMatchBeginPositionP23721188 ;
faldo:reference isoform:P23721-1 .
?templateMotifSequenceProfileAlignmentOperationP23721194 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23721MF_00160189 .
?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160197 .
?targetMotifMatchRegionMatchBeginMF_00160197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00160198 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160187, 1, (STRLEN(?templateMotifCigarP23721MF_00160187) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160187, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP23721188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160189, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160189) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160189, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160189) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_00160190) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionP23721207 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721209 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23721MF_00160202 .
?templateMotifSequenceMatchRegionP23721207 faldo:begin ?templateMotifSequenceMatchBeginP23721208 .
?templateMotifSequenceMatchBeginP23721208 faldo:position ?templateMotifSequenceMatchBeginPositionP23721203 ;
faldo:reference isoform:P23721-1 .
?templateMotifSequenceProfileAlignmentOperationP23721209 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160213 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23721MF_00160204 .
?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160212 .
?targetMotifMatchRegionMatchBeginMF_00160212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160205 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00160213 edam:has_input signature:MF_00160 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160202, 1, (STRLEN(?templateMotifCigarP23721MF_00160202) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160202, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionP23721203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160204, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160204) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160204, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160204) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00160205) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00160a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1239 .
})) .
BIND(?this AS ?case14) .
}
}
"xsd:string |
