| http://purl.uniprot.org/unirules/MF_00181#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:73083 up:source unirule:MF_00181 .
_:73084 up:source unirule:MF_00181 .
_:73085 up:source unirule:MF_00181 .
_:73086 up:source unirule:MF_00181 .
_:73087 up:source unirule:MF_00181 .
_:73088 up:source unirule:MF_00181 .
_:73089 up:source unirule:MF_00181 .
_:73090 up:source unirule:MF_00181 .
_:73091 up:source unirule:MF_00181 .
_:73092 up:source unirule:MF_00181 .
_:73093 up:source unirule:MF_00181 .
_:73094 up:source unirule:MF_00181 .
_:73095 up:source unirule:MF_00181 .
_:73096 up:source unirule:MF_00181 .
_:73097 up:source unirule:MF_00181 .
_:73098 up:source unirule:MF_00181 .
_:73099 up:source unirule:MF_00181 .
_:73100 up:source unirule:MF_00181 .
_:73101 up:source unirule:MF_00181 .
_:73102 up:source unirule:MF_00181 .
_:73103 up:source unirule:MF_00181 .
_:73104 up:source unirule:MF_00181 .
_:73105 up:source unirule:MF_00181 .
_:73106 up:source unirule:MF_00181 .
_:73107 up:source unirule:MF_00181 .
_:73108 up:source unirule:MF_00181 .
_:73109 up:source unirule:MF_00181 .
_:73110 up:source unirule:MF_00181 .
_:73111 up:source unirule:MF_00181 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0004177 ,
GO:0005737 ,
GO:0008235 ,
GO:0030145 ,
keyword:31 ,
keyword:378 ,
keyword:464 ,
keyword:479 ,
keyword:645 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.11.1' ;
up:fullName 'Probable cytosol aminopeptidase' ;
rdf:type up:Structured_Name .
?name1 up:ecName '3.4.11.10' ;
up:fullName 'Leucine aminopeptidase' ;
up:shortName 'LAP' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Leucyl aminopeptidase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'pepA' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:enzymeClass .
?annotation9 up:cofactor chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 manganese ions per subunit.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase M17 family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:29035 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:29035 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:29035 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:29035 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:29035 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:29035 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:29035 .
_:73112 a rdf:Statement ;
up:attribution _:73083 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:73113 a rdf:Statement ;
up:attribution _:73084 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:73114 a rdf:Statement ;
up:attribution _:73085 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:73115 a rdf:Statement ;
up:attribution _:73086 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:73116 a rdf:Statement ;
up:attribution _:73087 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:73117 a rdf:Statement ;
up:attribution _:73088 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:73118 a rdf:Statement ;
up:attribution _:73089 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:73119 a rdf:Statement ;
up:attribution _:73090 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:73120 a rdf:Statement ;
up:attribution _:73091 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:73121 a rdf:Statement ;
up:attribution _:73092 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:73122 a rdf:Statement ;
up:attribution _:73093 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:73123 a rdf:Statement ;
up:attribution _:73094 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:73124 a rdf:Statement ;
up:attribution _:73095 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:73125 a rdf:Statement ;
up:attribution _:73096 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:31 .
_:73126 a rdf:Statement ;
up:attribution _:73097 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:73127 a rdf:Statement ;
up:attribution _:73098 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:73128 a rdf:Statement ;
up:attribution _:73099 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004177 .
_:73129 a rdf:Statement ;
up:attribution _:73100 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008235 .
_:73130 a rdf:Statement ;
up:attribution _:73101 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:73131 a rdf:Statement ;
up:attribution _:73102 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:73132 a rdf:Statement ;
up:source unirule:MF_00181 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:73133 a rdf:Statement ;
up:attribution _:73103 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:73134 a rdf:Statement ;
up:source unirule:MF_00181 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:73135 a rdf:Statement ;
up:attribution _:73104 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:73136 a rdf:Statement ;
up:source unirule:MF_00181 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:73137 a rdf:Statement ;
up:attribution _:73105 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:73138 a rdf:Statement ;
up:source unirule:MF_00181 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:73139 a rdf:Statement ;
up:attribution _:73106 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:73140 a rdf:Statement ;
up:source unirule:MF_00181 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:73141 a rdf:Statement ;
up:attribution _:73107 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:73142 a rdf:Statement ;
up:source unirule:MF_00181 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:73143 a rdf:Statement ;
up:attribution _:73108 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:73144 a rdf:Statement ;
up:source unirule:MF_00181 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:73145 a rdf:Statement ;
up:attribution _:73109 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:73146 a rdf:Statement ;
up:source unirule:MF_00181 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:73147 a rdf:Statement ;
up:attribution _:73110 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:73148 a rdf:Statement ;
up:source unirule:MF_00181 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:73149 a rdf:Statement ;
up:attribution _:73111 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00181
#Rule MF_00181 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2023-01-17
VALUES ?supertaxon74 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00181 .
?thisOrganism rdfs:subClassOf+ ?supertaxon74 .
BIND(URI(CONCAT(STR(?this), '#MF_00181a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP6876780 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6876782 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68767MF_0018175 .
?templateMotifSequenceMatchRegionP6876780 faldo:begin ?templateMotifSequenceMatchBeginP6876781 .
?templateMotifSequenceMatchBeginP6876781 faldo:position ?templateMotifSequenceMatchBeginPositionP6876776 ;
faldo:reference isoform:P68767-1 .
?templateMotifSequenceProfileAlignmentOperationP6876782 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0018186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68767MF_0018177 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0018185 .
?targetMotifMatchRegionMatchBeginMF_0018185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0018178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0018186 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68767MF_0018175, 1, (STRLEN(?templateMotifCigarP68767MF_0018175) - STRLEN(REPLACE(?templateMotifCigarP68767MF_0018175, CONCAT('^(?:-*[^-]){', STR(((282 - ?templateMotifSequenceMatchBeginPositionP6876776) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68767MF_0018177, 1, (STRLEN(?targetMotifMatchCigarP68767MF_0018177) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_0018177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68767MF_0018177, 1, (STRLEN(?targetMotifMatchCigarP68767MF_0018177) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_0018177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0018178) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP6876795 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6876797 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68767MF_0018190 .
?templateMotifSequenceMatchRegionP6876795 faldo:begin ?templateMotifSequenceMatchBeginP6876796 .
?templateMotifSequenceMatchBeginP6876796 faldo:position ?templateMotifSequenceMatchBeginPositionP6876791 ;
faldo:reference isoform:P68767-1 .
?templateMotifSequenceProfileAlignmentOperationP6876797 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00181101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68767MF_0018192 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00181100 .
?targetMotifMatchRegionMatchBeginMF_00181100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0018193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00181101 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68767MF_0018190, 1, (STRLEN(?templateMotifCigarP68767MF_0018190) - STRLEN(REPLACE(?templateMotifCigarP68767MF_0018190, CONCAT('^(?:-*[^-]){', STR(((356 - ?templateMotifSequenceMatchBeginPositionP6876791) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68767MF_0018192, 1, (STRLEN(?targetMotifMatchCigarP68767MF_0018192) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_0018192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68767MF_0018192, 1, (STRLEN(?targetMotifMatchCigarP68767MF_0018192) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_0018192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0018193) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP68767110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68767112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68767MF_00181105 .
?templateMotifSequenceMatchRegionP68767110 faldo:begin ?templateMotifSequenceMatchBeginP68767111 .
?templateMotifSequenceMatchBeginP68767111 faldo:position ?templateMotifSequenceMatchBeginPositionP68767106 ;
faldo:reference isoform:P68767-1 .
?templateMotifSequenceProfileAlignmentOperationP68767112 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00181116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68767MF_00181107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00181115 .
?targetMotifMatchRegionMatchBeginMF_00181115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00181108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00181116 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68767MF_00181105, 1, (STRLEN(?templateMotifCigarP68767MF_00181105) - STRLEN(REPLACE(?templateMotifCigarP68767MF_00181105, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP68767106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68767MF_00181107, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181107) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68767MF_00181107, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181107) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00181108) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP68767125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68767127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68767MF_00181120 .
?templateMotifSequenceMatchRegionP68767125 faldo:begin ?templateMotifSequenceMatchBeginP68767126 .
?templateMotifSequenceMatchBeginP68767126 faldo:position ?templateMotifSequenceMatchBeginPositionP68767121 ;
faldo:reference isoform:P68767-1 .
?templateMotifSequenceProfileAlignmentOperationP68767127 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00181131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68767MF_00181122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00181130 .
?targetMotifMatchRegionMatchBeginMF_00181130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00181123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00181131 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68767MF_00181120, 1, (STRLEN(?templateMotifCigarP68767MF_00181120) - STRLEN(REPLACE(?templateMotifCigarP68767MF_00181120, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP68767121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68767MF_00181122, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181122) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68767MF_00181122, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181122) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00181123) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP68767140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68767142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68767MF_00181135 .
?templateMotifSequenceMatchRegionP68767140 faldo:begin ?templateMotifSequenceMatchBeginP68767141 .
?templateMotifSequenceMatchBeginP68767141 faldo:position ?templateMotifSequenceMatchBeginPositionP68767136 ;
faldo:reference isoform:P68767-1 .
?templateMotifSequenceProfileAlignmentOperationP68767142 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00181146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68767MF_00181137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00181145 .
?targetMotifMatchRegionMatchBeginMF_00181145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00181138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00181146 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68767MF_00181135, 1, (STRLEN(?templateMotifCigarP68767MF_00181135) - STRLEN(REPLACE(?templateMotifCigarP68767MF_00181135, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionP68767136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68767MF_00181137, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181137) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68767MF_00181137, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181137) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00181138) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP68767155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68767157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68767MF_00181150 .
?templateMotifSequenceMatchRegionP68767155 faldo:begin ?templateMotifSequenceMatchBeginP68767156 .
?templateMotifSequenceMatchBeginP68767156 faldo:position ?templateMotifSequenceMatchBeginPositionP68767151 ;
faldo:reference isoform:P68767-1 .
?templateMotifSequenceProfileAlignmentOperationP68767157 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00181161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68767MF_00181152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00181160 .
?targetMotifMatchRegionMatchBeginMF_00181160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00181153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00181161 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68767MF_00181150, 1, (STRLEN(?templateMotifCigarP68767MF_00181150) - STRLEN(REPLACE(?templateMotifCigarP68767MF_00181150, CONCAT('^(?:-*[^-]){', STR(((293 - ?templateMotifSequenceMatchBeginPositionP68767151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68767MF_00181152, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181152) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68767MF_00181152, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181152) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_00181153) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP68767170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68767172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68767MF_00181165 .
?templateMotifSequenceMatchRegionP68767170 faldo:begin ?templateMotifSequenceMatchBeginP68767171 .
?templateMotifSequenceMatchBeginP68767171 faldo:position ?templateMotifSequenceMatchBeginPositionP68767166 ;
faldo:reference isoform:P68767-1 .
?templateMotifSequenceProfileAlignmentOperationP68767172 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00181176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68767MF_00181167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00181175 .
?targetMotifMatchRegionMatchBeginMF_00181175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00181168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00181176 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68767MF_00181165, 1, (STRLEN(?templateMotifCigarP68767MF_00181165) - STRLEN(REPLACE(?templateMotifCigarP68767MF_00181165, CONCAT('^(?:-*[^-]){', STR(((352 - ?templateMotifSequenceMatchBeginPositionP68767166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68767MF_00181167, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181167) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68767MF_00181167, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181167) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_00181168) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP68767185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68767187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68767MF_00181180 .
?templateMotifSequenceMatchRegionP68767185 faldo:begin ?templateMotifSequenceMatchBeginP68767186 .
?templateMotifSequenceMatchBeginP68767186 faldo:position ?templateMotifSequenceMatchBeginPositionP68767181 ;
faldo:reference isoform:P68767-1 .
?templateMotifSequenceProfileAlignmentOperationP68767187 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00181191 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68767MF_00181182 .
?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00181190 .
?targetMotifMatchRegionMatchBeginMF_00181190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00181183 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00181191 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68767MF_00181180, 1, (STRLEN(?templateMotifCigarP68767MF_00181180) - STRLEN(REPLACE(?templateMotifCigarP68767MF_00181180, CONCAT('^(?:-*[^-]){', STR(((354 - ?templateMotifSequenceMatchBeginPositionP68767181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68767MF_00181182, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181182) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68767MF_00181182, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181182) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_00181183) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP68767200 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68767202 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68767MF_00181195 .
?templateMotifSequenceMatchRegionP68767200 faldo:begin ?templateMotifSequenceMatchBeginP68767201 .
?templateMotifSequenceMatchBeginP68767201 faldo:position ?templateMotifSequenceMatchBeginPositionP68767196 ;
faldo:reference isoform:P68767-1 .
?templateMotifSequenceProfileAlignmentOperationP68767202 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00181206 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68767MF_00181197 .
?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00181205 .
?targetMotifMatchRegionMatchBeginMF_00181205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00181198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00181206 edam:has_input signature:MF_00181 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68767MF_00181195, 1, (STRLEN(?templateMotifCigarP68767MF_00181195) - STRLEN(REPLACE(?templateMotifCigarP68767MF_00181195, CONCAT('^(?:-*[^-]){', STR(((354 - ?templateMotifSequenceMatchBeginPositionP68767196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68767MF_00181197, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181197) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68767MF_00181197, 1, (STRLEN(?targetMotifMatchCigarP68767MF_00181197) - STRLEN(REPLACE(?targetMotifMatchCigarP68767MF_00181197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_00181198) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00181a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
}
"xsd:string |
