| http://purl.uniprot.org/unirules/MF_00222#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:94466 up:source unirule:MF_00222 .
_:94467 up:source unirule:MF_00222 .
_:94468 up:source unirule:MF_00222 .
_:94469 up:source unirule:MF_00222 .
_:94470 up:source unirule:MF_00222 .
_:94471 up:source unirule:MF_00222 .
_:94472 up:source unirule:MF_00222 .
_:94473 up:source unirule:MF_00222 .
_:94474 up:source unirule:MF_00222 .
_:94475 up:source unirule:MF_00222 .
_:94476 up:source unirule:MF_00222 .
_:94477 up:source unirule:MF_00222 .
_:94478 up:source unirule:MF_00222 .
_:94479 up:source unirule:MF_00222 .
_:94480 up:source unirule:MF_00222 .
_:94481 up:source unirule:MF_00222 .
_:94482 up:source unirule:MF_00222 .
_:94483 up:source unirule:MF_00222 .
_:94484 up:source unirule:MF_00222 .
_:94485 up:source unirule:MF_00222 .
_:94486 up:source unirule:MF_00222 .
_:94487 up:source unirule:MF_00222 .
_:94488 up:source unirule:MF_00222 .
_:94489 up:source unirule:MF_00222 .
_:94490 up:source unirule:MF_00222 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0004764 ,
GO:0009423 ,
keyword:28 ,
keyword:521 ,
keyword:560 ,
keyword:57 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.25' ;
up:fullName 'Shikimate dehydrogenase (NADP(+))' ;
up:shortName 'SDH' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'aroE' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 4/7.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the shikimate dehydrogenase family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:58349 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:58349 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:36208 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:58349 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:36208 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:36208 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:36208 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:58349 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:36208 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:58349 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:36208 .
_:94491 a rdf:Statement ;
up:attribution _:94466 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:94492 a rdf:Statement ;
up:attribution _:94467 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:94493 a rdf:Statement ;
up:attribution _:94468 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:94494 a rdf:Statement ;
up:attribution _:94469 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:94495 a rdf:Statement ;
up:attribution _:94470 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:94496 a rdf:Statement ;
up:attribution _:94471 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:94497 a rdf:Statement ;
up:attribution _:94472 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:94498 a rdf:Statement ;
up:attribution _:94473 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:94499 a rdf:Statement ;
up:attribution _:94474 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:57 .
_:94500 a rdf:Statement ;
up:attribution _:94475 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:94501 a rdf:Statement ;
up:attribution _:94476 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:94502 a rdf:Statement ;
up:attribution _:94477 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004764 .
_:94503 a rdf:Statement ;
up:attribution _:94478 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009423 .
_:94504 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:94505 a rdf:Statement ;
up:attribution _:94479 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:94506 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:94507 a rdf:Statement ;
up:attribution _:94480 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:94508 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:94509 a rdf:Statement ;
up:attribution _:94481 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:94510 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:94511 a rdf:Statement ;
up:attribution _:94482 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:94512 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:94513 a rdf:Statement ;
up:attribution _:94483 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:94514 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:94515 a rdf:Statement ;
up:attribution _:94484 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:94516 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:94517 a rdf:Statement ;
up:attribution _:94485 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:94518 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:94519 a rdf:Statement ;
up:attribution _:94486 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:94520 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:94521 a rdf:Statement ;
up:attribution _:94487 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:94522 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:94523 a rdf:Statement ;
up:attribution _:94488 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:94524 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:94525 a rdf:Statement ;
up:attribution _:94489 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:94526 a rdf:Statement ;
up:source unirule:MF_00222 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:94527 a rdf:Statement ;
up:attribution _:94490 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00222
#Rule MF_00222 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon91 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00222 .
?thisOrganism rdfs:subClassOf+ ?supertaxon91 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03143 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionO6704997 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6704999 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_0022292 .
?templateMotifSequenceMatchRegionO6704997 faldo:begin ?templateMotifSequenceMatchBeginO6704998 .
?templateMotifSequenceMatchBeginO6704998 faldo:position ?templateMotifSequenceMatchBeginPositionO6704993 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO6704999 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222103 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_0022294 .
?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222102 .
?targetMotifMatchRegionMatchBeginMF_00222102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0022295 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222103 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_0022292, 1, (STRLEN(?templateMotifCigarO67049MF_0022292) - STRLEN(REPLACE(?templateMotifCigarO67049MF_0022292, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionO6704993) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_0022294, 1, (STRLEN(?targetMotifMatchCigarO67049MF_0022294) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_0022294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_0022294, 1, (STRLEN(?targetMotifMatchCigarO67049MF_0022294) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_0022294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0022295) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_0022292, 1, (STRLEN(?templateMotifCigarO67049MF_0022292) - STRLEN(REPLACE(?templateMotifCigarO67049MF_0022292, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionO6704993) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_0022294, 1, (STRLEN(?targetMotifMatchCigarO67049MF_0022294) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_0022294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_0022294, 1, (STRLEN(?targetMotifMatchCigarO67049MF_0022294) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_0022294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0022295) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('G[AGNSVY]GG[AISV]', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionO67049114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67049116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_00222109 .
?templateMotifSequenceMatchRegionO67049114 faldo:begin ?templateMotifSequenceMatchBeginO67049115 .
?templateMotifSequenceMatchBeginO67049115 faldo:position ?templateMotifSequenceMatchBeginPositionO67049110 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO67049116 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_00222111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222119 .
?targetMotifMatchRegionMatchBeginMF_00222119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00222112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222120 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222109, 1, (STRLEN(?templateMotifCigarO67049MF_00222109) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222109, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionO67049110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222111, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222111) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222111, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222111) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00222112) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222109, 1, (STRLEN(?templateMotifCigarO67049MF_00222109) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222109, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionO67049110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222111, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222111) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222111, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222111) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00222112) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('NRT[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionO67049131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67049133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_00222126 .
?templateMotifSequenceMatchRegionO67049131 faldo:begin ?templateMotifSequenceMatchBeginO67049132 .
?templateMotifSequenceMatchBeginO67049132 faldo:position ?templateMotifSequenceMatchBeginPositionO67049127 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO67049133 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_00222128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222136 .
?targetMotifMatchRegionMatchBeginMF_00222136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00222129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222137 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222126, 1, (STRLEN(?templateMotifCigarO67049MF_00222126) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222126, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionO67049127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222128, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222128) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222128, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222128) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00222129) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222126, 1, (STRLEN(?templateMotifCigarO67049MF_00222126) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222126, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionO67049127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222128, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222128) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222128, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222128) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00222129) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('[ST][ARNDCQEGHILKMFPSTWYVBZJUOX][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionO67049148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67049150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_00222143 .
?templateMotifSequenceMatchRegionO67049148 faldo:begin ?templateMotifSequenceMatchBeginO67049149 .
?templateMotifSequenceMatchBeginO67049149 faldo:position ?templateMotifSequenceMatchBeginPositionO67049144 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO67049150 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_00222145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222153 .
?targetMotifMatchRegionMatchBeginMF_00222153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00222146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222154 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222143, 1, (STRLEN(?templateMotifCigarO67049MF_00222143) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222143, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionO67049144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222145, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222145) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222145, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222145) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_00222146) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionO67049163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67049165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_00222158 .
?templateMotifSequenceMatchRegionO67049163 faldo:begin ?templateMotifSequenceMatchBeginO67049164 .
?templateMotifSequenceMatchBeginO67049164 faldo:position ?templateMotifSequenceMatchBeginPositionO67049159 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO67049165 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_00222160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222168 .
?targetMotifMatchRegionMatchBeginMF_00222168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00222161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222169 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222158, 1, (STRLEN(?templateMotifCigarO67049MF_00222158) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222158, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionO67049159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222160, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222160) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222160, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222160) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_00222161) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionO67049178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67049180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_00222173 .
?templateMotifSequenceMatchRegionO67049178 faldo:begin ?templateMotifSequenceMatchBeginO67049179 .
?templateMotifSequenceMatchBeginO67049179 faldo:position ?templateMotifSequenceMatchBeginPositionO67049174 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO67049180 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_00222175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222183 .
?targetMotifMatchRegionMatchBeginMF_00222183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00222176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222184 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222173, 1, (STRLEN(?templateMotifCigarO67049MF_00222173) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222173, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionO67049174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222175, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222175) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222175, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222175) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_00222176) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionO67049193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67049195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_00222188 .
?templateMotifSequenceMatchRegionO67049193 faldo:begin ?templateMotifSequenceMatchBeginO67049194 .
?templateMotifSequenceMatchBeginO67049194 faldo:position ?templateMotifSequenceMatchBeginPositionO67049189 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO67049195 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_00222190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222198 .
?targetMotifMatchRegionMatchBeginMF_00222198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00222191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222199 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222188, 1, (STRLEN(?templateMotifCigarO67049MF_00222188) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222188, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionO67049189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222190, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222190) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222190, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222190) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_00222191) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t202) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionO67049208 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67049210 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_00222203 .
?templateMotifSequenceMatchRegionO67049208 faldo:begin ?templateMotifSequenceMatchBeginO67049209 .
?templateMotifSequenceMatchBeginO67049209 faldo:position ?templateMotifSequenceMatchBeginPositionO67049204 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO67049210 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222214 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_00222205 .
?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222213 .
?targetMotifMatchRegionMatchBeginMF_00222213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00222206 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222214 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222203, 1, (STRLEN(?templateMotifCigarO67049MF_00222203) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222203, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionO67049204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222205, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222205) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222205, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222205) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00222206) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionO67049223 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67049225 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_00222218 .
?templateMotifSequenceMatchRegionO67049223 faldo:begin ?templateMotifSequenceMatchBeginO67049224 .
?templateMotifSequenceMatchBeginO67049224 faldo:position ?templateMotifSequenceMatchBeginPositionO67049219 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO67049225 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222229 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_00222220 .
?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222228 .
?targetMotifMatchRegionMatchBeginMF_00222228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00222221 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222229 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222218, 1, (STRLEN(?templateMotifCigarO67049MF_00222218) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222218, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionO67049219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222220, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222220) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222220, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222220) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_00222221) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t232) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER (REGEX('[IVMLCATFG]', SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch237 faldo:location ?templateMotifSequenceMatchRegionO67049238 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67049240 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_00222233 .
?templateMotifSequenceMatchRegionO67049238 faldo:begin ?templateMotifSequenceMatchBeginO67049239 .
?templateMotifSequenceMatchBeginO67049239 faldo:position ?templateMotifSequenceMatchBeginPositionO67049234 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO67049240 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch241 faldo:location ?targetMotifMatchRegionMatch242 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222244 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_00222235 .
?targetMotifMatchRegionMatch242 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222243 .
?targetMotifMatchRegionMatchBeginMF_00222243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00222236 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222244 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222233, 1, (STRLEN(?templateMotifCigarO67049MF_00222233) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222233, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionO67049234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1245) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222235, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222235) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222235, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222235) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), '')))), '[^-]', ''))) AS ?step2246) .
BIND(((?step2246 + ?targetMotifMatchRegionMatchBeginPositionMF_00222236) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t247) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch252 faldo:location ?templateMotifSequenceMatchRegionO67049253 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67049255 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_00222248 .
?templateMotifSequenceMatchRegionO67049253 faldo:begin ?templateMotifSequenceMatchBeginO67049254 .
?templateMotifSequenceMatchBeginO67049254 faldo:position ?templateMotifSequenceMatchBeginPositionO67049249 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO67049255 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch256 faldo:location ?targetMotifMatchRegionMatch257 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222259 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_00222250 .
?targetMotifMatchRegionMatch257 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222258 .
?targetMotifMatchRegionMatchBeginMF_00222258 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00222251 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222259 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222248, 1, (STRLEN(?templateMotifCigarO67049MF_00222248) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222248, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionO67049249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222250, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222250) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222250, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222250) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_00222251) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch267 faldo:location ?templateMotifSequenceMatchRegionO67049268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67049270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67049MF_00222263 .
?templateMotifSequenceMatchRegionO67049268 faldo:begin ?templateMotifSequenceMatchBeginO67049269 .
?templateMotifSequenceMatchBeginO67049269 faldo:position ?templateMotifSequenceMatchBeginPositionO67049264 ;
faldo:reference isoform:O67049-1 .
?templateMotifSequenceProfileAlignmentOperationO67049270 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
?targetMotifMatch271 faldo:location ?targetMotifMatchRegionMatch272 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00222274 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67049MF_00222265 .
?targetMotifMatchRegionMatch272 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00222273 .
?targetMotifMatchRegionMatchBeginMF_00222273 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00222266 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00222274 edam:has_input signature:MF_00222 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67049MF_00222263, 1, (STRLEN(?templateMotifCigarO67049MF_00222263) - STRLEN(REPLACE(?templateMotifCigarO67049MF_00222263, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionO67049264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67049MF_00222265, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222265) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67049MF_00222265, 1, (STRLEN(?targetMotifMatchCigarO67049MF_00222265) - STRLEN(REPLACE(?targetMotifMatchCigarO67049MF_00222265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_00222266) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t277) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00222a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
}
"xsd:string |
