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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_00286#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00286#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00286#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00286#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00286#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:116846 up:source unirule:MF_00286 .
_:116847 up:source unirule:MF_00286 .
_:116848 up:source unirule:MF_00286 .
_:116849 up:source unirule:MF_00286 .
_:116850 up:source unirule:MF_00286 .
_:116851 up:source unirule:MF_00286 .
_:116852 up:source unirule:MF_00286 .
_:116853 up:source unirule:MF_00286 .
_:116854 up:source unirule:MF_00286 .
_:116855 up:source unirule:MF_00286 .
_:116856 up:source unirule:MF_00286 .
_:116857 up:source unirule:MF_00286 .
_:116858 up:source unirule:MF_00286 .
_:116859 up:source unirule:MF_00286 .
_:116860 up:source unirule:MF_00286 .
_:116861 up:source unirule:MF_00286 .
_:116862 up:source unirule:MF_00286 .
_:116863 up:source unirule:MF_00286 .
_:116864 up:source unirule:MF_00286 .
_:116865 up:source unirule:MF_00286 .
_:116866 up:source unirule:MF_00286 .
_:116867 up:source unirule:MF_00286 .
_:116868 up:source unirule:MF_00286 .
_:116869 up:source unirule:MF_00286 .
_:116870 up:source unirule:MF_00286 .
_:116871 up:source unirule:MF_00286 .
_:116872 up:source unirule:MF_00286 .
_:116873 up:source unirule:MF_00286 .
_:116874 up:source unirule:MF_00286 .
_:116875 up:source unirule:MF_00286 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ;
up:classifiedWith GO:0005886 ,
GO:0009055 ,
GO:0015035 ,
keyword:1003 ,
keyword:1015 ,
keyword:1133 ,
keyword:143 ,
keyword:249 ,
keyword:472 ,
keyword:560 ,
keyword:676 ,
keyword:812 ,
keyword:813 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Disulfide bond formation protein B' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Disulfide oxidoreductase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'dsbB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein.' .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DsbB family.' .
?case5 up:classifiedWith keyword:997 .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Redox-active' .
?pfsb63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Redox-active' .
?pfsb69 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
_:116876 a rdf:Statement ;
up:attribution _:116846 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:116877 a rdf:Statement ;
up:attribution _:116847 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:116878 a rdf:Statement ;
up:attribution _:116848 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:116879 a rdf:Statement ;
up:attribution _:116849 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:116880 a rdf:Statement ;
up:attribution _:116850 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:116881 a rdf:Statement ;
up:attribution _:116851 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:116882 a rdf:Statement ;
up:attribution _:116852 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:116883 a rdf:Statement ;
up:attribution _:116853 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:116884 a rdf:Statement ;
up:attribution _:116854 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:676 .
_:116885 a rdf:Statement ;
up:attribution _:116855 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:116886 a rdf:Statement ;
up:attribution _:116856 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:249 .
_:116887 a rdf:Statement ;
up:attribution _:116857 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:143 .
_:116888 a rdf:Statement ;
up:attribution _:116858 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:116889 a rdf:Statement ;
up:attribution _:116859 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:116890 a rdf:Statement ;
up:attribution _:116860 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:116891 a rdf:Statement ;
up:attribution _:116861 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009055 .
_:116892 a rdf:Statement ;
up:attribution _:116862 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015035 .
_:116893 a rdf:Statement ;
up:attribution _:116863 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:116894 a rdf:Statement ;
up:attribution _:116864 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:116895 a rdf:Statement ;
up:source unirule:MF_00286 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:116896 a rdf:Statement ;
up:attribution _:116865 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:116897 a rdf:Statement ;
up:source unirule:MF_00286 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:116898 a rdf:Statement ;
up:attribution _:116866 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:116899 a rdf:Statement ;
up:source unirule:MF_00286 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:116900 a rdf:Statement ;
up:attribution _:116867 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:116901 a rdf:Statement ;
up:source unirule:MF_00286 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:116902 a rdf:Statement ;
up:attribution _:116868 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:116903 a rdf:Statement ;
up:source unirule:MF_00286 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:116904 a rdf:Statement ;
up:attribution _:116869 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:116905 a rdf:Statement ;
up:source unirule:MF_00286 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:116906 a rdf:Statement ;
up:attribution _:116870 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:116907 a rdf:Statement ;
up:source unirule:MF_00286 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:116908 a rdf:Statement ;
up:attribution _:116871 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:116909 a rdf:Statement ;
up:source unirule:MF_00286 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:116910 a rdf:Statement ;
up:attribution _:116872 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:116911 a rdf:Statement ;
up:source unirule:MF_00286 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:116912 a rdf:Statement ;
up:attribution _:116873 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:116913 a rdf:Statement ;
up:source unirule:MF_00286 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:116914 a rdf:Statement ;
up:attribution _:116874 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:116915 a rdf:Statement ;
up:source unirule:MF_00286 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:116916 a rdf:Statement ;
up:attribution _:116875 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00286
#Rule MF_00286 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2021-06-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00286 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00286a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionP0A6M278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M2MF_0028673 .
?templateMotifSequenceMatchRegionP0A6M278 faldo:begin ?templateMotifSequenceMatchBeginP0A6M279 .
?templateMotifSequenceMatchBeginP0A6M279 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M274 ;
faldo:reference isoform:P0A6M2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M280 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0028684 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M2MF_0028675 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0028683 .
?targetMotifMatchRegionMatchBeginMF_0028683 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0028676 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0028684 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_0028673, 1, (STRLEN(?templateMotifCigarP0A6M2MF_0028673) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_0028673, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0A6M274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_0028675, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_0028675) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_0028675, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_0028675, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_0028675) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_0028675, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0028676) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((BOUND(?thisPositionOn11) && BOUND(?thisPositionOn12))) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP0A6M293 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M295 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M2MF_0028688 .
?templateMotifSequenceMatchRegionP0A6M293 faldo:begin ?templateMotifSequenceMatchBeginP0A6M294 .
?templateMotifSequenceMatchBeginP0A6M294 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M289 ;
faldo:reference isoform:P0A6M2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M295 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0028699 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M2MF_0028690 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0028698 .
?targetMotifMatchRegionMatchBeginMF_0028698 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0028691 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0028699 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_0028688, 1, (STRLEN(?templateMotifCigarP0A6M2MF_0028688) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_0028688, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionP0A6M289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_0028690, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_0028690) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_0028690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_0028690, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_0028690) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_0028690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0028691) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_0028688, 1, (STRLEN(?templateMotifCigarP0A6M2MF_0028688) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_0028688, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP0A6M289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_0028690, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_0028690) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_0028690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_0028690, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_0028690) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_0028690, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0028691) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP0A6M2110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M2112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M2MF_00286105 .
?templateMotifSequenceMatchRegionP0A6M2110 faldo:begin ?templateMotifSequenceMatchBeginP0A6M2111 .
?templateMotifSequenceMatchBeginP0A6M2111 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M2106 ;
faldo:reference isoform:P0A6M2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M2112 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00286116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M2MF_00286107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00286115 .
?targetMotifMatchRegionMatchBeginMF_00286115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00286108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00286116 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286105, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286105) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286105, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionP0A6M2106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286107, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286107) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286107, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286107) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00286108) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286105, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286105) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286105, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP0A6M2106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286107, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286107) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286107, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286107) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00286108) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP0A6M2127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M2129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M2MF_00286122 .
?templateMotifSequenceMatchRegionP0A6M2127 faldo:begin ?templateMotifSequenceMatchBeginP0A6M2128 .
?templateMotifSequenceMatchBeginP0A6M2128 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M2123 ;
faldo:reference isoform:P0A6M2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M2129 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00286133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M2MF_00286124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00286132 .
?targetMotifMatchRegionMatchBeginMF_00286132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00286125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00286133 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286122, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286122) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286122, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionP0A6M2123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286124, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286124) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286124, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286124) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00286125) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286122, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286122) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286122, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP0A6M2123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286124, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286124) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286124, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286124) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00286125) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((BOUND(?thisPositionOn29) && BOUND(?thisPositionOn30))) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP0A6M2144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M2146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M2MF_00286139 .
?templateMotifSequenceMatchRegionP0A6M2144 faldo:begin ?templateMotifSequenceMatchBeginP0A6M2145 .
?templateMotifSequenceMatchBeginP0A6M2145 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M2140 ;
faldo:reference isoform:P0A6M2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M2146 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00286150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M2MF_00286141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00286149 .
?targetMotifMatchRegionMatchBeginMF_00286149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00286142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00286150 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286139, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286139) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286139, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0A6M2140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286141, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286141, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00286142) - 1) AS ?thisPositionOn35) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286139, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286139) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286139, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP0A6M2140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286141, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286141, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_00286142) - 1) AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((BOUND(?thisPositionOn35) && BOUND(?thisPositionOn36))) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP0A6M2161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M2163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M2MF_00286156 .
?templateMotifSequenceMatchRegionP0A6M2161 faldo:begin ?templateMotifSequenceMatchBeginP0A6M2162 .
?templateMotifSequenceMatchBeginP0A6M2162 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M2157 ;
faldo:reference isoform:P0A6M2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M2163 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00286167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M2MF_00286158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00286166 .
?targetMotifMatchRegionMatchBeginMF_00286166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00286159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00286167 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286156, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286156) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286156, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP0A6M2157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286158, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286158, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_00286159) - 1) AS ?thisPositionOn41) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286156, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286156) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286156, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP0A6M2157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286158, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286158, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_00286159) - 1) AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((BOUND(?thisPositionOn41) && BOUND(?thisPositionOn42))) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionP0A6M2178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M2180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M2MF_00286173 .
?templateMotifSequenceMatchRegionP0A6M2178 faldo:begin ?templateMotifSequenceMatchBeginP0A6M2179 .
?templateMotifSequenceMatchBeginP0A6M2179 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M2174 ;
faldo:reference isoform:P0A6M2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M2180 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00286184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M2MF_00286175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00286183 .
?targetMotifMatchRegionMatchBeginMF_00286183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00286176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00286184 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286173, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286173) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286173, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionP0A6M2174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286175, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286175) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286175, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286175) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_00286176) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286173, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286173) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286173, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP0A6M2174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286175, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286175) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286175, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286175) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_00286176) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER ((BOUND(?thisPositionOn47) && BOUND(?thisPositionOn48))) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP0A6M2195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M2197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M2MF_00286190 .
?templateMotifSequenceMatchRegionP0A6M2195 faldo:begin ?templateMotifSequenceMatchBeginP0A6M2196 .
?templateMotifSequenceMatchBeginP0A6M2196 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M2191 ;
faldo:reference isoform:P0A6M2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M2197 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00286201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M2MF_00286192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00286200 .
?targetMotifMatchRegionMatchBeginMF_00286200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00286193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00286201 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286190, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286190) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286190, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionP0A6M2191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286192, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286192) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286192, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286192) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_00286193) - 1) AS ?thisPositionOn53) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286190, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286190) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286190, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP0A6M2191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286192, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286192) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286192, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286192) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_00286193) - 1) AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse52) .
FILTER ((BOUND(?thisPositionOn53) && BOUND(?thisPositionOn54))) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionP0A6M2212 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M2214 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M2MF_00286207 .
?templateMotifSequenceMatchRegionP0A6M2212 faldo:begin ?templateMotifSequenceMatchBeginP0A6M2213 .
?templateMotifSequenceMatchBeginP0A6M2213 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M2208 ;
faldo:reference isoform:P0A6M2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M2214 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00286218 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M2MF_00286209 .
?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00286217 .
?targetMotifMatchRegionMatchBeginMF_00286217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00286210 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00286218 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286207, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286207) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286207, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP0A6M2208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286209, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286209) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286209, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286209) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_00286210) - 1) AS ?thisPositionOn59) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse58) .
FILTER ((BOUND(?thisPositionOn59) && BOUND(?thisPositionOn60))) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionP0A6M2227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M2229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M2MF_00286222 .
?templateMotifSequenceMatchRegionP0A6M2227 faldo:begin ?templateMotifSequenceMatchBeginP0A6M2228 .
?templateMotifSequenceMatchBeginP0A6M2228 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M2223 ;
faldo:reference isoform:P0A6M2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M2229 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00286233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M2MF_00286224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00286232 .
?targetMotifMatchRegionMatchBeginMF_00286232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00286225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00286233 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286222, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286222) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286222, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP0A6M2223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286224, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286224) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286224, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286224) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_00286225) - 1) AS ?thisPositionOn65) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286222, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286222) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286222, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP0A6M2223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286224, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286224) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286224, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286224) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_00286225) - 1) AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse64) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]C', SUBSTR(?thisSequenceValue, ?thisPositionOn65, (?thisPositionOn66 - ?thisPositionOn65)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionP0A6M2244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M2246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M2MF_00286239 .
?templateMotifSequenceMatchRegionP0A6M2244 faldo:begin ?templateMotifSequenceMatchBeginP0A6M2245 .
?templateMotifSequenceMatchBeginP0A6M2245 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M2240 ;
faldo:reference isoform:P0A6M2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M2246 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00286250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M2MF_00286241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00286249 .
?targetMotifMatchRegionMatchBeginMF_00286249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00286242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00286250 edam:has_input signature:MF_00286 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286239, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286239) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286239, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP0A6M2240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286241, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286241) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286241, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286241) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_00286242) - 1) AS ?thisPositionOn71) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M2MF_00286239, 1, (STRLEN(?templateMotifCigarP0A6M2MF_00286239) - STRLEN(REPLACE(?templateMotifCigarP0A6M2MF_00286239, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP0A6M2240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286241, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286241) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M2MF_00286241, 1, (STRLEN(?targetMotifMatchCigarP0A6M2MF_00286241) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M2MF_00286241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) .
BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_00286242) - 1) AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t255) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse70) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn71, (?thisPositionOn72 - ?thisPositionOn71)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00286a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome |
| http://purl.uniprot.org/unirules/MF_00286 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00286#construct |