| http://purl.uniprot.org/unirules/MF_00361#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:144260 up:source unirule:MF_00361 .
_:144261 up:source unirule:MF_00361 .
_:144262 up:source unirule:MF_00361 .
_:144263 up:source unirule:MF_00361 .
_:144264 up:source unirule:MF_00361 .
_:144265 up:source unirule:MF_00361 .
_:144266 up:source unirule:MF_00361 .
_:144267 up:source unirule:MF_00361 .
_:144268 up:source unirule:MF_00361 .
_:144269 up:source unirule:MF_00361 .
_:144270 up:source unirule:MF_00361 .
_:144271 up:source unirule:MF_00361 .
_:144272 up:source unirule:MF_00361 .
_:144273 up:source unirule:MF_00361 .
_:144274 up:source unirule:MF_00361 .
_:144275 up:source unirule:MF_00361 .
_:144276 up:source unirule:MF_00361 .
_:144277 up:source unirule:MF_00361 .
_:144278 up:source unirule:MF_00361 .
_:144279 up:source unirule:MF_00361 .
_:144280 up:source unirule:MF_00361 .
_:144281 up:source unirule:MF_00361 .
_:144282 up:source unirule:MF_00361 .
_:144283 up:source unirule:MF_00361 .
_:144284 up:source unirule:MF_00361 .
_:144285 up:source unirule:MF_00361 .
_:144286 up:source unirule:MF_00361 .
_:144287 up:source unirule:MF_00361 .
_:144288 up:source unirule:MF_00361 .
_:144289 up:source unirule:MF_00361 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0003951 ,
GO:0005737 ,
GO:0006741 ,
GO:0046872 ,
keyword:418 ,
keyword:520 ,
keyword:521 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.23' ;
up:fullName 'NAD kinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'ATP-dependent NAD kinase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'nadK' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:60240 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NAD kinase family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:57540 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:57540 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:57540 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:57540 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:57540 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:57540 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:57540 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:57540 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:57540 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:57540 .
_:144290 a rdf:Statement ;
up:attribution _:144260 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:144291 a rdf:Statement ;
up:attribution _:144261 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:144292 a rdf:Statement ;
up:attribution _:144262 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:144293 a rdf:Statement ;
up:attribution _:144263 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:144294 a rdf:Statement ;
up:attribution _:144264 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:144295 a rdf:Statement ;
up:attribution _:144265 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:144296 a rdf:Statement ;
up:attribution _:144266 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:144297 a rdf:Statement ;
up:attribution _:144267 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:144298 a rdf:Statement ;
up:attribution _:144268 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:144299 a rdf:Statement ;
up:attribution _:144269 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:144300 a rdf:Statement ;
up:attribution _:144270 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:144301 a rdf:Statement ;
up:attribution _:144271 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:144302 a rdf:Statement ;
up:attribution _:144272 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:144303 a rdf:Statement ;
up:attribution _:144273 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:144304 a rdf:Statement ;
up:attribution _:144274 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:144305 a rdf:Statement ;
up:attribution _:144275 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003951 .
_:144306 a rdf:Statement ;
up:attribution _:144276 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:144307 a rdf:Statement ;
up:attribution _:144277 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:144308 a rdf:Statement ;
up:attribution _:144278 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006741 .
_:144309 a rdf:Statement ;
up:source unirule:MF_00361 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:144310 a rdf:Statement ;
up:attribution _:144279 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:144311 a rdf:Statement ;
up:source unirule:MF_00361 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:144312 a rdf:Statement ;
up:attribution _:144280 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:144313 a rdf:Statement ;
up:source unirule:MF_00361 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:144314 a rdf:Statement ;
up:attribution _:144281 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:144315 a rdf:Statement ;
up:source unirule:MF_00361 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:144316 a rdf:Statement ;
up:attribution _:144282 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:144317 a rdf:Statement ;
up:source unirule:MF_00361 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:144318 a rdf:Statement ;
up:attribution _:144283 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:144319 a rdf:Statement ;
up:source unirule:MF_00361 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:144320 a rdf:Statement ;
up:attribution _:144284 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:144321 a rdf:Statement ;
up:source unirule:MF_00361 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:144322 a rdf:Statement ;
up:attribution _:144285 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:144323 a rdf:Statement ;
up:source unirule:MF_00361 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:144324 a rdf:Statement ;
up:attribution _:144286 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:144325 a rdf:Statement ;
up:source unirule:MF_00361 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:144326 a rdf:Statement ;
up:attribution _:144287 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:144327 a rdf:Statement ;
up:source unirule:MF_00361 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:144328 a rdf:Statement ;
up:attribution _:144288 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:144329 a rdf:Statement ;
up:source unirule:MF_00361 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:144330 a rdf:Statement ;
up:attribution _:144289 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00361
#Rule MF_00361 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-12
VALUES ?supertaxon86 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00361 .
?thisOrganism rdfs:subClassOf+ ?supertaxon86 .
BIND(URI(CONCAT(STR(?this), '#MF_00361a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionO3029792 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3029794 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30297MF_0036187 .
?templateMotifSequenceMatchRegionO3029792 faldo:begin ?templateMotifSequenceMatchBeginO3029793 .
?templateMotifSequenceMatchBeginO3029793 faldo:position ?templateMotifSequenceMatchBeginPositionO3029788 ;
faldo:reference isoform:O30297-1 .
?templateMotifSequenceProfileAlignmentOperationO3029794 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0036198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30297MF_0036189 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0036197 .
?targetMotifMatchRegionMatchBeginMF_0036197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0036190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0036198 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_0036187, 1, (STRLEN(?templateMotifCigarO30297MF_0036187) - STRLEN(REPLACE(?templateMotifCigarO30297MF_0036187, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionO3029788) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_0036189, 1, (STRLEN(?targetMotifMatchCigarO30297MF_0036189) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_0036189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_0036189, 1, (STRLEN(?targetMotifMatchCigarO30297MF_0036189) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_0036189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0036190) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_0036187, 1, (STRLEN(?templateMotifCigarO30297MF_0036187) - STRLEN(REPLACE(?templateMotifCigarO30297MF_0036187, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionO3029788) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_0036189, 1, (STRLEN(?targetMotifMatchCigarO30297MF_0036189) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_0036189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_0036189, 1, (STRLEN(?targetMotifMatchCigarO30297MF_0036189) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_0036189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0036190) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('[DN][GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionO30297109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO30297111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30297MF_00361104 .
?templateMotifSequenceMatchRegionO30297109 faldo:begin ?templateMotifSequenceMatchBeginO30297110 .
?templateMotifSequenceMatchBeginO30297110 faldo:position ?templateMotifSequenceMatchBeginPositionO30297105 ;
faldo:reference isoform:O30297-1 .
?templateMotifSequenceProfileAlignmentOperationO30297111 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00361115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30297MF_00361106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00361114 .
?targetMotifMatchRegionMatchBeginMF_00361114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00361107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00361115 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361104, 1, (STRLEN(?templateMotifCigarO30297MF_00361104) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361104, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionO30297105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361106, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361106) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361106, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361106) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_00361107) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361104, 1, (STRLEN(?templateMotifCigarO30297MF_00361104) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361104, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionO30297105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361106, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361106) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361106, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361106) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_00361107) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[NDE][ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionO30297126 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO30297128 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30297MF_00361121 .
?templateMotifSequenceMatchRegionO30297126 faldo:begin ?templateMotifSequenceMatchBeginO30297127 .
?templateMotifSequenceMatchBeginO30297127 faldo:position ?templateMotifSequenceMatchBeginPositionO30297122 ;
faldo:reference isoform:O30297-1 .
?templateMotifSequenceProfileAlignmentOperationO30297128 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00361132 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30297MF_00361123 .
?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00361131 .
?targetMotifMatchRegionMatchBeginMF_00361131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00361124 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00361132 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361121, 1, (STRLEN(?templateMotifCigarO30297MF_00361121) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361121, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionO30297122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361123, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361123) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361123, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361123) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_00361124) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361121, 1, (STRLEN(?templateMotifCigarO30297MF_00361121) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361121, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionO30297122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361123, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361123) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361123, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361123) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00361124) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('[TS][ARNDCQEGHILKMFPSTWYVBZJUOX][YHW][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]S', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionO30297143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO30297145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30297MF_00361138 .
?templateMotifSequenceMatchRegionO30297143 faldo:begin ?templateMotifSequenceMatchBeginO30297144 .
?templateMotifSequenceMatchBeginO30297144 faldo:position ?templateMotifSequenceMatchBeginPositionO30297139 ;
faldo:reference isoform:O30297-1 .
?templateMotifSequenceProfileAlignmentOperationO30297145 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00361149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30297MF_00361140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00361148 .
?targetMotifMatchRegionMatchBeginMF_00361148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00361141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00361149 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361138, 1, (STRLEN(?templateMotifCigarO30297MF_00361138) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361138, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionO30297139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361140, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361140) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361140, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361140) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00361141) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionO30297158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO30297160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30297MF_00361153 .
?templateMotifSequenceMatchRegionO30297158 faldo:begin ?templateMotifSequenceMatchBeginO30297159 .
?templateMotifSequenceMatchBeginO30297159 faldo:position ?templateMotifSequenceMatchBeginPositionO30297154 ;
faldo:reference isoform:O30297-1 .
?templateMotifSequenceProfileAlignmentOperationO30297160 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00361164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30297MF_00361155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00361163 .
?targetMotifMatchRegionMatchBeginMF_00361163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00361156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00361164 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361153, 1, (STRLEN(?templateMotifCigarO30297MF_00361153) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361153, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionO30297154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361155, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361155) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361155, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361155) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00361156) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER (REGEX('[RKH]', SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionO30297173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO30297175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30297MF_00361168 .
?templateMotifSequenceMatchRegionO30297173 faldo:begin ?templateMotifSequenceMatchBeginO30297174 .
?templateMotifSequenceMatchBeginO30297174 faldo:position ?templateMotifSequenceMatchBeginPositionO30297169 ;
faldo:reference isoform:O30297-1 .
?templateMotifSequenceProfileAlignmentOperationO30297175 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00361179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30297MF_00361170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00361178 .
?targetMotifMatchRegionMatchBeginMF_00361178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00361171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00361179 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361168, 1, (STRLEN(?templateMotifCigarO30297MF_00361168) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361168, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionO30297169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361170, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361170) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361170, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361170) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00361171) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER (REGEX('[KHR]', SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionO30297188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO30297190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30297MF_00361183 .
?templateMotifSequenceMatchRegionO30297188 faldo:begin ?templateMotifSequenceMatchBeginO30297189 .
?templateMotifSequenceMatchBeginO30297189 faldo:position ?templateMotifSequenceMatchBeginPositionO30297184 ;
faldo:reference isoform:O30297-1 .
?templateMotifSequenceProfileAlignmentOperationO30297190 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00361194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30297MF_00361185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00361193 .
?targetMotifMatchRegionMatchBeginMF_00361193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00361186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00361194 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361183, 1, (STRLEN(?templateMotifCigarO30297MF_00361183) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361183, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionO30297184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361185, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361185) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361185, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361185) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00361186) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER (REGEX('[RKH]', SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionO30297203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO30297205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30297MF_00361198 .
?templateMotifSequenceMatchRegionO30297203 faldo:begin ?templateMotifSequenceMatchBeginO30297204 .
?templateMotifSequenceMatchBeginO30297204 faldo:position ?templateMotifSequenceMatchBeginPositionO30297199 ;
faldo:reference isoform:O30297-1 .
?templateMotifSequenceProfileAlignmentOperationO30297205 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00361209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30297MF_00361200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00361208 .
?targetMotifMatchRegionMatchBeginMF_00361208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00361201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00361209 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361198, 1, (STRLEN(?templateMotifCigarO30297MF_00361198) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361198, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionO30297199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361200, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361200) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361200, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361200) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00361201) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionO30297218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO30297220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30297MF_00361213 .
?templateMotifSequenceMatchRegionO30297218 faldo:begin ?templateMotifSequenceMatchBeginO30297219 .
?templateMotifSequenceMatchBeginO30297219 faldo:position ?templateMotifSequenceMatchBeginPositionO30297214 ;
faldo:reference isoform:O30297-1 .
?templateMotifSequenceProfileAlignmentOperationO30297220 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00361224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30297MF_00361215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00361223 .
?targetMotifMatchRegionMatchBeginMF_00361223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00361216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00361224 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361213, 1, (STRLEN(?templateMotifCigarO30297MF_00361213) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361213, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionO30297214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361215, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361215) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361215, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361215) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_00361216) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER (REGEX('[ILVA]', SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionO30297233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO30297235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30297MF_00361228 .
?templateMotifSequenceMatchRegionO30297233 faldo:begin ?templateMotifSequenceMatchBeginO30297234 .
?templateMotifSequenceMatchBeginO30297234 faldo:position ?templateMotifSequenceMatchBeginPositionO30297229 ;
faldo:reference isoform:O30297-1 .
?templateMotifSequenceProfileAlignmentOperationO30297235 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00361239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30297MF_00361230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00361238 .
?targetMotifMatchRegionMatchBeginMF_00361238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00361231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00361239 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361228, 1, (STRLEN(?templateMotifCigarO30297MF_00361228) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361228, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionO30297229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361230, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361230) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361230, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361230) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_00361231) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER (REGEX('[ALV]', SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionO30297248 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO30297250 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO30297MF_00361243 .
?templateMotifSequenceMatchRegionO30297248 faldo:begin ?templateMotifSequenceMatchBeginO30297249 .
?templateMotifSequenceMatchBeginO30297249 faldo:position ?templateMotifSequenceMatchBeginPositionO30297244 ;
faldo:reference isoform:O30297-1 .
?templateMotifSequenceProfileAlignmentOperationO30297250 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00361254 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO30297MF_00361245 .
?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00361253 .
?targetMotifMatchRegionMatchBeginMF_00361253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00361246 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00361254 edam:has_input signature:MF_00361 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO30297MF_00361243, 1, (STRLEN(?templateMotifCigarO30297MF_00361243) - STRLEN(REPLACE(?templateMotifCigarO30297MF_00361243, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionO30297244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO30297MF_00361245, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361245) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO30297MF_00361245, 1, (STRLEN(?targetMotifMatchCigarO30297MF_00361245) - STRLEN(REPLACE(?targetMotifMatchCigarO30297MF_00361245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) .
BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_00361246) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t257) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER (REGEX('[QN]', SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00361a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
}
"xsd:string |
