HAMAP

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Subject	Predicate	Object
http://purl.uniprot.org/unirules/MF_00407#construct	https://hamap.expasy.org/rdf/vocab#addsTriple	http://purl.uniprot.org/unirules/MF_00407#construct-template-88
http://purl.uniprot.org/unirules/MF_00407#construct	https://hamap.expasy.org/rdf/vocab#addsTriple	http://purl.uniprot.org/unirules/MF_00407#construct-template-175
http://purl.uniprot.org/unirules/MF_00407#construct	https://hamap.expasy.org/rdf/vocab#addsTriple	http://purl.uniprot.org/unirules/MF_00407#construct-template-151
http://purl.uniprot.org/unirules/MF_00407#construct	https://hamap.expasy.org/rdf/vocab#addsTriple	http://purl.uniprot.org/unirules/MF_00407#construct-template-198
http://purl.uniprot.org/unirules/MF_00407#construct	https://hamap.expasy.org/rdf/vocab#addsTriple	http://purl.uniprot.org/unirules/MF_00407#construct-template-174
http://purl.uniprot.org/unirules/MF_00407#construct	https://hamap.expasy.org/rdf/vocab#addsTriple	http://purl.uniprot.org/unirules/MF_00407#construct-template-150
http://purl.uniprot.org/unirules/MF_00407#construct	https://hamap.expasy.org/rdf/vocab#addsTriple	http://purl.uniprot.org/unirules/MF_00407#construct-template-199
http://purl.uniprot.org/unirules/MF_00407#construct	http://www.w3.org/ns/shacl#prefixes	http://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_00407#construct	http://spinrdf.org/sp#where	http://purl.uniprot.org/unirules/MF_00407#construct-where-list-0
http://purl.uniprot.org/unirules/MF_00407#construct	http://spinrdf.org/sp#templates	http://purl.uniprot.org/unirules/MF_00407#construct-template-list-0
http://purl.uniprot.org/unirules/MF_00407#construct	http://www.w3.org/ns/shacl#construct	"CONSTRUCT { _:160296 up:source unirule:MF_00407 . _:160297 up:source unirule:MF_00407 . _:160298 up:source unirule:MF_00407 . _:160299 up:source unirule:MF_00407 . _:160300 up:source unirule:MF_00407 . _:160301 up:source unirule:MF_00407 . _:160302 up:source unirule:MF_00407 . _:160303 up:source unirule:MF_00407 . _:160304 up:source unirule:MF_00407 . _:160305 up:source unirule:MF_00407 . _:160306 up:source unirule:MF_00407 . _:160307 up:source unirule:MF_00407 . _:160308 up:source unirule:MF_00407 . _:160309 up:source unirule:MF_00407 . _:160310 up:source unirule:MF_00407 . _:160311 up:source unirule:MF_00407 . _:160312 up:source unirule:MF_00407 . _:160313 up:source unirule:MF_00407 . _:160314 up:source unirule:MF_00407 . _:160315 up:source unirule:MF_00407 . _:160316 up:source unirule:MF_00407 . _:160317 up:source unirule:MF_00407 . _:160318 up:source unirule:MF_00407 . _:160319 up:source unirule:MF_00407 . _:160320 up:source unirule:MF_00407 . _:160321 up:source unirule:MF_00407 . _:160322 up:source unirule:MF_00407 . _:160323 up:source unirule:MF_00407 . _:160324 up:source unirule:MF_00407 . _:160325 up:source unirule:MF_00407 . _:160326 up:source unirule:MF_00407 . _:160327 up:source unirule:MF_00407 . _:160328 up:source unirule:MF_00407 . _:160329 up:source unirule:MF_00407 . _:160330 up:source unirule:MF_00407 . ?this up:annotation ?annotation1 , ?annotation2 , ?annotation3 ; up:classifiedWith GO:0003910 , GO:0005524 , GO:0006260 , GO:0006281 , GO:0006310 , keyword:131 , keyword:132 , keyword:227 , keyword:233 , keyword:234 , keyword:235 , keyword:436 , keyword:460 , keyword:479 , keyword:547 , keyword:67 . ?gene0 skos:prefLabel 'lig' . ?annotation1 a up:Function_Annotation ; rdfs:comment 'DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.' . ?annotation2 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the ATP-dependent DNA ligase family.' . ?case4 up:alternativeName ?name6 ; up:recommendedName ?name5 . ?name5 up:ecName '6.5.1.1' ; up:fullName 'Probable DNA ligase' ; rdf:type up:Structured_Name . ?name6 up:fullName 'Polydeoxyribonucleotide synthase [ATP]' ; rdf:type up:Structured_Name . ?case7 up:alternativeName ?name9 ; up:classifiedWith keyword:520 ; up:recommendedName ?name8 . ?name8 up:ecName '6.5.1.6' ; up:fullName 'DNA ligase' ; rdf:type up:Structured_Name . ?name9 up:fullName 'Polydeoxyribonucleotide synthase [ATP/NAD(+)]' ; rdf:type up:Structured_Name . ?case10 up:alternativeName ?name12 ; up:recommendedName ?name11 . ?name11 up:ecName '6.5.1.1' ; up:fullName 'DNA ligase' ; rdf:type up:Structured_Name . ?name12 up:fullName 'Polydeoxyribonucleotide synthase [ATP]' ; rdf:type up:Structured_Name . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'N6-AMP-lysine intermediate' . ?pfsb15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:30616 . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:30616 . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:30616 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:30616 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:30616 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:30616 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:30616 . _:160331 a rdf:Statement ; up:attribution _:160296 ; rdf:subject ?gene0 ; rdf:predicate up:encodedBy ; rdf:object ?gene0 . _:160332 a rdf:Statement ; up:attribution _:160297 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:160333 a rdf:Statement ; up:attribution _:160298 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:160334 a rdf:Statement ; up:attribution _:160299 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:160335 a rdf:Statement ; up:attribution _:160300 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:227 . _:160336 a rdf:Statement ; up:attribution _:160301 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:160337 a rdf:Statement ; up:attribution _:160302 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:235 . _:160338 a rdf:Statement ; up:attribution _:160303 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:233 . _:160339 a rdf:Statement ; up:attribution _:160304 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:131 . _:160340 a rdf:Statement ; up:attribution _:160305 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:132 . _:160341 a rdf:Statement ; up:attribution _:160306 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:160342 a rdf:Statement ; up:attribution _:160307 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:160343 a rdf:Statement ; up:attribution _:160308 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:160344 a rdf:Statement ; up:attribution _:160309 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:160345 a rdf:Statement ; up:attribution _:160310 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:160346 a rdf:Statement ; up:attribution _:160311 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:160347 a rdf:Statement ; up:attribution _:160312 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003910 . _:160348 a rdf:Statement ; up:attribution _:160313 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006310 . _:160349 a rdf:Statement ; up:attribution _:160314 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006281 . _:160350 a rdf:Statement ; up:attribution _:160315 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006260 . _:160351 a rdf:Statement ; up:attribution _:160316 ; rdf:subject ?case4 ; rdf:predicate up:recommendedName ; rdf:object ?name5 . _:160352 a rdf:Statement ; up:attribution _:160317 ; rdf:subject ?case4 ; rdf:predicate up:alternativeName ; rdf:object ?name6 . _:160353 a rdf:Statement ; up:attribution _:160318 ; rdf:subject ?case7 ; rdf:predicate up:recommendedName ; rdf:object ?name8 . _:160354 a rdf:Statement ; up:attribution _:160319 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name9 . _:160355 a rdf:Statement ; up:attribution _:160320 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:160356 a rdf:Statement ; up:attribution _:160321 ; rdf:subject ?case10 ; rdf:predicate up:recommendedName ; rdf:object ?name11 . _:160357 a rdf:Statement ; up:attribution _:160322 ; rdf:subject ?case10 ; rdf:predicate up:alternativeName ; rdf:object ?name12 . _:160358 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:160359 a rdf:Statement ; up:attribution _:160323 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:160360 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:160361 a rdf:Statement ; up:attribution _:160324 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:160362 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:160363 a rdf:Statement ; up:attribution _:160325 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:160364 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:160365 a rdf:Statement ; up:attribution _:160326 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:160366 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:160367 a rdf:Statement ; up:attribution _:160327 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:160368 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:160369 a rdf:Statement ; up:attribution _:160328 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:160370 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:160371 a rdf:Statement ; up:attribution _:160329 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:160372 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:160373 a rdf:Statement ; up:attribution _:160330 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00407 #Rule MF_00407 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01 VALUES ?supertaxon68 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00407 . ?thisOrganism rdfs:subClassOf+ ?supertaxon68 . BIND(URI(CONCAT(STR(?this), '#MF_00407a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_00407a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00407a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionP5670974 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5670976 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_0040769 . ?templateMotifSequenceMatchRegionP5670974 faldo:begin ?templateMotifSequenceMatchBeginP5670975 . ?templateMotifSequenceMatchBeginP5670975 faldo:position ?templateMotifSequenceMatchBeginPositionP5670970 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP5670976 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0040780 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_0040771 . ?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0040779 . ?targetMotifMatchRegionMatchBeginMF_0040779 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0040772 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0040780 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_0040769, 1, (STRLEN(?templateMotifCigarP56709MF_0040769) - STRLEN(REPLACE(?templateMotifCigarP56709MF_0040769, CONCAT('^(?:-[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionP5670970) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_0040771, 1, (STRLEN(?targetMotifMatchCigarP56709MF_0040771) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_0040771, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_0040771, 1, (STRLEN(?targetMotifMatchCigarP56709MF_0040771) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_0040771, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) . BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0040772) - 1) AS ?thisPositionOn17) . BIND(?thisPositionOn17 AS ?thisPositionOn18) . BIND(?this AS ?pfs1t83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP5670989 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5670991 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_0040784 . ?templateMotifSequenceMatchRegionP5670989 faldo:begin ?templateMotifSequenceMatchBeginP5670990 . ?templateMotifSequenceMatchBeginP5670990 faldo:position ?templateMotifSequenceMatchBeginPositionP5670985 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP5670991 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0040795 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_0040786 . ?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0040794 . ?targetMotifMatchRegionMatchBeginMF_0040794 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0040787 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0040795 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_0040784, 1, (STRLEN(?templateMotifCigarP56709MF_0040784) - STRLEN(REPLACE(?templateMotifCigarP56709MF_0040784, CONCAT('^(?:-[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP5670985) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_0040786, 1, (STRLEN(?targetMotifMatchCigarP56709MF_0040786) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_0040786, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_0040786, 1, (STRLEN(?targetMotifMatchCigarP56709MF_0040786) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_0040786, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0040787) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00407a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP56709104 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709106 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_0040799 . ?templateMotifSequenceMatchRegionP56709104 faldo:begin ?templateMotifSequenceMatchBeginP56709105 . ?templateMotifSequenceMatchBeginP56709105 faldo:position ?templateMotifSequenceMatchBeginPositionP56709100 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709106 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407110 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407101 . ?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407109 . ?targetMotifMatchRegionMatchBeginMF_00407109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407102 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407110 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_0040799, 1, (STRLEN(?templateMotifCigarP56709MF_0040799) - STRLEN(REPLACE(?templateMotifCigarP56709MF_0040799, CONCAT('^(?:-[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionP56709100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407101, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407101) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407101, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407101, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407101) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407101, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) . BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_00407102) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP56709119 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709121 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_00407114 . ?templateMotifSequenceMatchRegionP56709119 faldo:begin ?templateMotifSequenceMatchBeginP56709120 . ?templateMotifSequenceMatchBeginP56709120 faldo:position ?templateMotifSequenceMatchBeginPositionP56709115 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709121 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407125 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407116 . ?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407124 . ?targetMotifMatchRegionMatchBeginMF_00407124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407117 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407125 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_00407114, 1, (STRLEN(?templateMotifCigarP56709MF_00407114) - STRLEN(REPLACE(?templateMotifCigarP56709MF_00407114, CONCAT('^(?:-[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionP56709115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407116, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407116) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407116, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407116, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407116) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407116, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) . BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_00407117) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t128) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP56709134 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709136 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_00407129 . ?templateMotifSequenceMatchRegionP56709134 faldo:begin ?templateMotifSequenceMatchBeginP56709135 . ?templateMotifSequenceMatchBeginP56709135 faldo:position ?templateMotifSequenceMatchBeginPositionP56709130 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709136 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407140 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407131 . ?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407139 . ?targetMotifMatchRegionMatchBeginMF_00407139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407132 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407140 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_00407129, 1, (STRLEN(?templateMotifCigarP56709MF_00407129) - STRLEN(REPLACE(?templateMotifCigarP56709MF_00407129, CONCAT('^(?:-[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionP56709130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407131, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407131) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407131, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407131, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407131) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407131, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00407132) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP56709149 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709151 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_00407144 . ?templateMotifSequenceMatchRegionP56709149 faldo:begin ?templateMotifSequenceMatchBeginP56709150 . ?templateMotifSequenceMatchBeginP56709150 faldo:position ?templateMotifSequenceMatchBeginPositionP56709145 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709151 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407155 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407146 . ?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407154 . ?targetMotifMatchRegionMatchBeginMF_00407154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407147 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407155 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_00407144, 1, (STRLEN(?templateMotifCigarP56709MF_00407144) - STRLEN(REPLACE(?templateMotifCigarP56709MF_00407144, CONCAT('^(?:-[^-]){', STR(((339 - ?templateMotifSequenceMatchBeginPositionP56709145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407146, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407146) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407146, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407146, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407146) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407146, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) . BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_00407147) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t158) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'F')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP56709164 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709166 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_00407159 . ?templateMotifSequenceMatchRegionP56709164 faldo:begin ?templateMotifSequenceMatchBeginP56709165 . ?templateMotifSequenceMatchBeginP56709165 faldo:position ?templateMotifSequenceMatchBeginPositionP56709160 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709166 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407170 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407161 . ?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407169 . ?targetMotifMatchRegionMatchBeginMF_00407169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407162 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407170 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_00407159, 1, (STRLEN(?templateMotifCigarP56709MF_00407159) - STRLEN(REPLACE(?templateMotifCigarP56709MF_00407159, CONCAT('^(?:-[^-]){', STR(((414 - ?templateMotifSequenceMatchBeginPositionP56709160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407161, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407161) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407161, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407161, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407161) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407161, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) . BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_00407162) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t173) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP56709179 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709181 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_00407174 . ?templateMotifSequenceMatchRegionP56709179 faldo:begin ?templateMotifSequenceMatchBeginP56709180 . ?templateMotifSequenceMatchBeginP56709180 faldo:position ?templateMotifSequenceMatchBeginPositionP56709175 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709181 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407185 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407176 . ?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407184 . ?targetMotifMatchRegionMatchBeginMF_00407184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407177 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407185 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_00407174, 1, (STRLEN(?templateMotifCigarP56709MF_00407174) - STRLEN(REPLACE(?templateMotifCigarP56709MF_00407174, CONCAT('^(?:-[^-]){', STR(((420 - ?templateMotifSequenceMatchBeginPositionP56709175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407176, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407176) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407176, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407176, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407176) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407176, CONCAT('^(?:[a-z](?:[A-Z]\|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) . BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_00407177) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t188) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?case4) . BIND(URI(CONCAT(STR(?this), '#MF_00407a5')) AS ?name5) . BIND(URI(CONCAT(STR(?this), '#MF_00407a6')) AS ?name6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2263 . BIND(?this AS ?case7) . BIND(URI(CONCAT(STR(?this), '#MF_00407a8')) AS ?name8) . BIND(URI(CONCAT(STR(?this), '#MF_00407a9')) AS ?name9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2263 . })) . BIND(?this AS ?case10) . BIND(URI(CONCAT(STR(?this), '#MF_00407a11')) AS ?name11) . BIND(URI(CONCAT(STR(?this), '#MF_00407a12')) AS ?name12) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_00407	http://www.w3.org/ns/shacl#rule	http://purl.uniprot.org/unirules/MF_00407#construct

This SPARQL endpoint is hosted by the Swiss-Prot team of the SIB Swiss Institute of Bioinformatics, and uses Eclipse rdf4j database.
HAMAP development and curation activities at the SIB are supported by the Swiss Federal Government through the State Secretariat for Education, Research and Innovation (SERI).
The development of this SPARQL endpoint was supported in part by ELIXIR (Implementation study on "
A microbial metabolism resource for Systems Biology").

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