| http://purl.uniprot.org/unirules/MF_00536#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:209486 up:source unirule:MF_00536 .
_:209487 up:source unirule:MF_00536 .
_:209488 up:source unirule:MF_00536 .
_:209489 up:source unirule:MF_00536 .
_:209490 up:source unirule:MF_00536 .
_:209491 up:source unirule:MF_00536 .
_:209492 up:source unirule:MF_00536 .
_:209493 up:source unirule:MF_00536 .
_:209494 up:source unirule:MF_00536 .
_:209495 up:source unirule:MF_00536 .
_:209496 up:source unirule:MF_00536 .
_:209497 up:source unirule:MF_00536 .
_:209498 up:source unirule:MF_00536 .
_:209499 up:source unirule:MF_00536 .
_:209500 up:source unirule:MF_00536 .
_:209501 up:source unirule:MF_00536 .
_:209502 up:source unirule:MF_00536 .
_:209503 up:source unirule:MF_00536 .
_:209504 up:source unirule:MF_00536 .
_:209505 up:source unirule:MF_00536 .
_:209506 up:source unirule:MF_00536 .
_:209507 up:source unirule:MF_00536 .
_:209508 up:source unirule:MF_00536 .
_:209509 up:source unirule:MF_00536 .
_:209510 up:source unirule:MF_00536 .
_:209511 up:source unirule:MF_00536 .
_:209512 up:source unirule:MF_00536 .
_:209513 up:source unirule:MF_00536 .
_:209514 up:source unirule:MF_00536 .
_:209515 up:source unirule:MF_00536 .
_:209516 up:source unirule:MF_00536 .
_:209517 up:source unirule:MF_00536 .
_:209518 up:source unirule:MF_00536 .
_:209519 up:source unirule:MF_00536 .
_:209520 up:source unirule:MF_00536 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0005737 ,
GO:0008615 ,
GO:0042823 ,
GO:0046872 ,
GO:0050570 ,
keyword:479 ,
keyword:520 ,
keyword:521 ,
keyword:560 ,
keyword:664 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.262' ;
up:fullName '4-hydroxythreonine-4-phosphate dehydrogenase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '4-(phosphohydroxy)-L-threonine dehydrogenase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pdxA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L-threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment "Cofactor biosynthesis; pyridoxine 5'-phosphate biosynthesis; pyridoxine 5'-phosphate from D-erythrose 4-phosphate: step 4/5." .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Annotation ;
rdfs:comment 'The active site is located at the dimer interface.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PdxA family.' .
?case12 up:classifiedWith GO:0000287 ,
GO:0008270 ,
GO:0050897 ,
keyword:170 ,
keyword:460 ,
keyword:862 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:60240 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:60240 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:60240 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf ?molecule40 .
?molecule40 rdfs:label 'substrate' .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf ?molecule48 .
?molecule48 rdfs:label 'substrate' .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf ?molecule56 .
?molecule56 rdfs:label 'substrate' .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf ?molecule64 .
?molecule64 rdfs:label 'substrate' .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf ?molecule72 .
?molecule72 rdfs:label 'substrate' .
_:209521 a rdf:Statement ;
up:attribution _:209486 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:209522 a rdf:Statement ;
up:attribution _:209487 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:209523 a rdf:Statement ;
up:attribution _:209488 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:209524 a rdf:Statement ;
up:attribution _:209489 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:209525 a rdf:Statement ;
up:attribution _:209490 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:209526 a rdf:Statement ;
up:attribution _:209491 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:209527 a rdf:Statement ;
up:attribution _:209492 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:209528 a rdf:Statement ;
up:attribution _:209493 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:209529 a rdf:Statement ;
up:attribution _:209494 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:209530 a rdf:Statement ;
up:attribution _:209495 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:209531 a rdf:Statement ;
up:attribution _:209496 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:209532 a rdf:Statement ;
up:attribution _:209497 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:664 .
_:209533 a rdf:Statement ;
up:attribution _:209498 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:209534 a rdf:Statement ;
up:attribution _:209499 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:209535 a rdf:Statement ;
up:attribution _:209500 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:209536 a rdf:Statement ;
up:attribution _:209501 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:209537 a rdf:Statement ;
up:attribution _:209502 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050570 .
_:209538 a rdf:Statement ;
up:attribution _:209503 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:209539 a rdf:Statement ;
up:attribution _:209504 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042823 .
_:209540 a rdf:Statement ;
up:attribution _:209505 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008615 .
_:209541 a rdf:Statement ;
up:attribution _:209506 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:209542 a rdf:Statement ;
up:attribution _:209507 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:170 .
_:209543 a rdf:Statement ;
up:attribution _:209508 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:209544 a rdf:Statement ;
up:attribution _:209509 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:209545 a rdf:Statement ;
up:attribution _:209510 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050897 .
_:209546 a rdf:Statement ;
up:attribution _:209511 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:209547 a rdf:Statement ;
up:attribution _:209512 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:209548 a rdf:Statement ;
up:source unirule:MF_00536 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:209549 a rdf:Statement ;
up:attribution _:209513 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:209550 a rdf:Statement ;
up:source unirule:MF_00536 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:209551 a rdf:Statement ;
up:attribution _:209514 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:209552 a rdf:Statement ;
up:source unirule:MF_00536 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:209553 a rdf:Statement ;
up:attribution _:209515 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:209554 a rdf:Statement ;
up:source unirule:MF_00536 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:209555 a rdf:Statement ;
up:attribution _:209516 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:209556 a rdf:Statement ;
up:source unirule:MF_00536 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:209557 a rdf:Statement ;
up:attribution _:209517 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:209558 a rdf:Statement ;
up:source unirule:MF_00536 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:209559 a rdf:Statement ;
up:attribution _:209518 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:209560 a rdf:Statement ;
up:source unirule:MF_00536 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:209561 a rdf:Statement ;
up:attribution _:209519 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:209562 a rdf:Statement ;
up:source unirule:MF_00536 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:209563 a rdf:Statement ;
up:attribution _:209520 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00536
#Rule MF_00536 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00536 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00536a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP1962480 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1962482 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19624MF_0053675 .
?templateMotifSequenceMatchRegionP1962480 faldo:begin ?templateMotifSequenceMatchBeginP1962481 .
?templateMotifSequenceMatchBeginP1962481 faldo:position ?templateMotifSequenceMatchBeginPositionP1962476 ;
faldo:reference isoform:P19624-1 .
?templateMotifSequenceProfileAlignmentOperationP1962482 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0053686 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19624MF_0053677 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0053685 .
?targetMotifMatchRegionMatchBeginMF_0053685 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0053678 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0053686 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19624MF_0053675, 1, (STRLEN(?templateMotifCigarP19624MF_0053675) - STRLEN(REPLACE(?templateMotifCigarP19624MF_0053675, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP1962476) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19624MF_0053677, 1, (STRLEN(?targetMotifMatchCigarP19624MF_0053677) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_0053677, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19624MF_0053677, 1, (STRLEN(?targetMotifMatchCigarP19624MF_0053677) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_0053677, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0053678) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP1962495 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1962497 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19624MF_0053690 .
?templateMotifSequenceMatchRegionP1962495 faldo:begin ?templateMotifSequenceMatchBeginP1962496 .
?templateMotifSequenceMatchBeginP1962496 faldo:position ?templateMotifSequenceMatchBeginPositionP1962491 ;
faldo:reference isoform:P19624-1 .
?templateMotifSequenceProfileAlignmentOperationP1962497 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00536101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19624MF_0053692 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00536100 .
?targetMotifMatchRegionMatchBeginMF_00536100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0053693 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00536101 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19624MF_0053690, 1, (STRLEN(?templateMotifCigarP19624MF_0053690) - STRLEN(REPLACE(?templateMotifCigarP19624MF_0053690, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionP1962491) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19624MF_0053692, 1, (STRLEN(?targetMotifMatchCigarP19624MF_0053692) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_0053692, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19624MF_0053692, 1, (STRLEN(?targetMotifMatchCigarP19624MF_0053692) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_0053692, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0053693) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP19624110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP19624112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19624MF_00536105 .
?templateMotifSequenceMatchRegionP19624110 faldo:begin ?templateMotifSequenceMatchBeginP19624111 .
?templateMotifSequenceMatchBeginP19624111 faldo:position ?templateMotifSequenceMatchBeginPositionP19624106 ;
faldo:reference isoform:P19624-1 .
?templateMotifSequenceProfileAlignmentOperationP19624112 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00536116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19624MF_00536107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00536115 .
?targetMotifMatchRegionMatchBeginMF_00536115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00536108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00536116 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19624MF_00536105, 1, (STRLEN(?templateMotifCigarP19624MF_00536105) - STRLEN(REPLACE(?templateMotifCigarP19624MF_00536105, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionP19624106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19624MF_00536107, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536107) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19624MF_00536107, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536107) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00536108) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP19624125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP19624127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19624MF_00536120 .
?templateMotifSequenceMatchRegionP19624125 faldo:begin ?templateMotifSequenceMatchBeginP19624126 .
?templateMotifSequenceMatchBeginP19624126 faldo:position ?templateMotifSequenceMatchBeginPositionP19624121 ;
faldo:reference isoform:P19624-1 .
?templateMotifSequenceProfileAlignmentOperationP19624127 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00536131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19624MF_00536122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00536130 .
?targetMotifMatchRegionMatchBeginMF_00536130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00536123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00536131 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19624MF_00536120, 1, (STRLEN(?templateMotifCigarP19624MF_00536120) - STRLEN(REPLACE(?templateMotifCigarP19624MF_00536120, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP19624121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19624MF_00536122, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536122) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19624MF_00536122, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536122) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00536123) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP19624140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP19624142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19624MF_00536135 .
?templateMotifSequenceMatchRegionP19624140 faldo:begin ?templateMotifSequenceMatchBeginP19624141 .
?templateMotifSequenceMatchBeginP19624141 faldo:position ?templateMotifSequenceMatchBeginPositionP19624136 ;
faldo:reference isoform:P19624-1 .
?templateMotifSequenceProfileAlignmentOperationP19624142 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00536146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19624MF_00536137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00536145 .
?targetMotifMatchRegionMatchBeginMF_00536145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00536138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00536146 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19624MF_00536135, 1, (STRLEN(?templateMotifCigarP19624MF_00536135) - STRLEN(REPLACE(?templateMotifCigarP19624MF_00536135, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP19624136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19624MF_00536137, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536137) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19624MF_00536137, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536137) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00536138) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse46) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP19624155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP19624157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19624MF_00536150 .
?templateMotifSequenceMatchRegionP19624155 faldo:begin ?templateMotifSequenceMatchBeginP19624156 .
?templateMotifSequenceMatchBeginP19624156 faldo:position ?templateMotifSequenceMatchBeginPositionP19624151 ;
faldo:reference isoform:P19624-1 .
?templateMotifSequenceProfileAlignmentOperationP19624157 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00536161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19624MF_00536152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00536160 .
?targetMotifMatchRegionMatchBeginMF_00536160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00536153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00536161 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19624MF_00536150, 1, (STRLEN(?templateMotifCigarP19624MF_00536150) - STRLEN(REPLACE(?templateMotifCigarP19624MF_00536150, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP19624151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19624MF_00536152, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536152) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19624MF_00536152, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536152) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_00536153) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP19624170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP19624172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19624MF_00536165 .
?templateMotifSequenceMatchRegionP19624170 faldo:begin ?templateMotifSequenceMatchBeginP19624171 .
?templateMotifSequenceMatchBeginP19624171 faldo:position ?templateMotifSequenceMatchBeginPositionP19624166 ;
faldo:reference isoform:P19624-1 .
?templateMotifSequenceProfileAlignmentOperationP19624172 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00536176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19624MF_00536167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00536175 .
?targetMotifMatchRegionMatchBeginMF_00536175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00536168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00536176 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19624MF_00536165, 1, (STRLEN(?templateMotifCigarP19624MF_00536165) - STRLEN(REPLACE(?templateMotifCigarP19624MF_00536165, CONCAT('^(?:-*[^-]){', STR(((283 - ?templateMotifSequenceMatchBeginPositionP19624166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19624MF_00536167, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536167) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19624MF_00536167, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536167) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_00536168) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP19624185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP19624187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP19624MF_00536180 .
?templateMotifSequenceMatchRegionP19624185 faldo:begin ?templateMotifSequenceMatchBeginP19624186 .
?templateMotifSequenceMatchBeginP19624186 faldo:position ?templateMotifSequenceMatchBeginPositionP19624181 ;
faldo:reference isoform:P19624-1 .
?templateMotifSequenceProfileAlignmentOperationP19624187 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00536191 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP19624MF_00536182 .
?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00536190 .
?targetMotifMatchRegionMatchBeginMF_00536190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00536183 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00536191 edam:has_input signature:MF_00536 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP19624MF_00536180, 1, (STRLEN(?templateMotifCigarP19624MF_00536180) - STRLEN(REPLACE(?templateMotifCigarP19624MF_00536180, CONCAT('^(?:-*[^-]){', STR(((292 - ?templateMotifSequenceMatchBeginPositionP19624181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP19624MF_00536182, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536182) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP19624MF_00536182, 1, (STRLEN(?targetMotifMatchCigarP19624MF_00536182) - STRLEN(REPLACE(?targetMotifMatchCigarP19624MF_00536182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_00536183) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00536a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1224 .
})) .
BIND(?this AS ?case13) .
}
}
"xsd:string |
