| http://purl.uniprot.org/unirules/MF_00558#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:217886 up:source unirule:MF_00558 .
_:217887 up:source unirule:MF_00558 .
_:217888 up:source unirule:MF_00558 .
_:217889 up:source unirule:MF_00558 .
_:217890 up:source unirule:MF_00558 .
_:217891 up:source unirule:MF_00558 .
_:217892 up:source unirule:MF_00558 .
_:217893 up:source unirule:MF_00558 .
_:217894 up:source unirule:MF_00558 .
_:217895 up:source unirule:MF_00558 .
_:217896 up:source unirule:MF_00558 .
_:217897 up:source unirule:MF_00558 .
_:217898 up:source unirule:MF_00558 .
_:217899 up:source unirule:MF_00558 .
_:217900 up:source unirule:MF_00558 .
_:217901 up:source unirule:MF_00558 .
_:217902 up:source unirule:MF_00558 .
_:217903 up:source unirule:MF_00558 .
_:217904 up:source unirule:MF_00558 .
_:217905 up:source unirule:MF_00558 .
_:217906 up:source unirule:MF_00558 .
_:217907 up:source unirule:MF_00558 .
_:217908 up:source unirule:MF_00558 .
_:217909 up:source unirule:MF_00558 .
_:217910 up:source unirule:MF_00558 .
_:217911 up:source unirule:MF_00558 .
_:217912 up:source unirule:MF_00558 .
_:217913 up:source unirule:MF_00558 .
_:217914 up:source unirule:MF_00558 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0004775 ,
GO:0005524 ,
GO:0006099 ,
keyword:436 ,
keyword:547 ,
keyword:67 ,
keyword:816 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.2.1.5' ;
up:fullName 'Succinate--CoA ligase [ADP-forming] subunit beta' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Succinyl-CoA synthetase subunit beta' ;
up:shortName 'SCS-beta' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'sucC' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer of two alpha and two beta subunits.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the succinate/malate CoA ligase beta subunit family.' .
?case11 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?pfs12 up:annotation ?annotation13 ,
?annotation19 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:18420 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:18420 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:30616 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:30616 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf ?molecule44 .
?molecule44 rdfs:label 'substrate' .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:30616 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:30616 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:30616 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf ?molecule73 .
?molecule73 rdfs:label 'substrate' .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
rdf:type up:Domain_Extent_Annotation ;
rdfs:comment 'ATP-grasp' .
?pfsb78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
_:217915 a rdf:Statement ;
up:attribution _:217886 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:217916 a rdf:Statement ;
up:attribution _:217887 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:217917 a rdf:Statement ;
up:attribution _:217888 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:217918 a rdf:Statement ;
up:attribution _:217889 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:217919 a rdf:Statement ;
up:attribution _:217890 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:217920 a rdf:Statement ;
up:attribution _:217891 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:217921 a rdf:Statement ;
up:attribution _:217892 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:217922 a rdf:Statement ;
up:attribution _:217893 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:217923 a rdf:Statement ;
up:attribution _:217894 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:217924 a rdf:Statement ;
up:attribution _:217895 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:217925 a rdf:Statement ;
up:attribution _:217896 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:217926 a rdf:Statement ;
up:attribution _:217897 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:217927 a rdf:Statement ;
up:attribution _:217898 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:816 .
_:217928 a rdf:Statement ;
up:attribution _:217899 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:217929 a rdf:Statement ;
up:attribution _:217900 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004775 .
_:217930 a rdf:Statement ;
up:attribution _:217901 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006099 .
_:217931 a rdf:Statement ;
up:attribution _:217902 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:217932 a rdf:Statement ;
up:attribution _:217903 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:217933 a rdf:Statement ;
up:attribution _:217904 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:217934 a rdf:Statement ;
up:source unirule:MF_00558 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:217935 a rdf:Statement ;
up:attribution _:217905 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:217936 a rdf:Statement ;
up:source unirule:MF_00558 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:217937 a rdf:Statement ;
up:attribution _:217906 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:217938 a rdf:Statement ;
up:source unirule:MF_00558 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:217939 a rdf:Statement ;
up:attribution _:217907 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:217940 a rdf:Statement ;
up:source unirule:MF_00558 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:217941 a rdf:Statement ;
up:attribution _:217908 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:217942 a rdf:Statement ;
up:source unirule:MF_00558 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:217943 a rdf:Statement ;
up:attribution _:217909 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:217944 a rdf:Statement ;
up:source unirule:MF_00558 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:217945 a rdf:Statement ;
up:attribution _:217910 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:217946 a rdf:Statement ;
up:source unirule:MF_00558 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:217947 a rdf:Statement ;
up:attribution _:217911 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:217948 a rdf:Statement ;
up:source unirule:MF_00558 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:217949 a rdf:Statement ;
up:attribution _:217912 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:217950 a rdf:Statement ;
up:source unirule:MF_00558 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:217951 a rdf:Statement ;
up:attribution _:217913 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:217952 a rdf:Statement ;
up:source unirule:MF_00558 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:217953 a rdf:Statement ;
up:attribution _:217914 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00558
#Rule MF_00558 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00558 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03221 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00558 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03221 .
})) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00558a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP0A83687 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A83689 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_0055882 .
?templateMotifSequenceMatchRegionP0A83687 faldo:begin ?templateMotifSequenceMatchBeginP0A83688 .
?templateMotifSequenceMatchBeginP0A83688 faldo:position ?templateMotifSequenceMatchBeginPositionP0A83683 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A83689 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055893 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_0055884 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055892 .
?targetMotifMatchRegionMatchBeginMF_0055892 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055885 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055893 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_0055882, 1, (STRLEN(?templateMotifCigarP0A836MF_0055882) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_0055882, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP0A83683) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_0055884, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055884) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_0055884, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055884) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0055885) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'N')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_0055882, 1, (STRLEN(?templateMotifCigarP0A836MF_0055882) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_0055882, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP0A83683) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_0055884, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055884) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_0055884, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_0055884) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_0055884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0055885) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'D')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP0A836105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558100 .
?templateMotifSequenceMatchRegionP0A836105 faldo:begin ?templateMotifSequenceMatchBeginP0A836106 .
?templateMotifSequenceMatchBeginP0A836106 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836101 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836107 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558110 .
?targetMotifMatchRegionMatchBeginMF_00558110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558111 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558100, 1, (STRLEN(?templateMotifCigarP0A836MF_00558100) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558100, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP0A836101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558102, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558102, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558102) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_00558103) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs2t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER (BOUND(?thisPositionOn30)) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP0A836120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558115 .
?templateMotifSequenceMatchRegionP0A836120 faldo:begin ?templateMotifSequenceMatchBeginP0A836121 .
?templateMotifSequenceMatchBeginP0A836121 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836116 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836122 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558125 .
?targetMotifMatchRegionMatchBeginMF_00558125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558126 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558115, 1, (STRLEN(?templateMotifCigarP0A836MF_00558115) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558115, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP0A836116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558117, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558117) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558117, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558117) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_00558118) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558115, 1, (STRLEN(?templateMotifCigarP0A836MF_00558115) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558115, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP0A836116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558117, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558117) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558117, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558117) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_00558118) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)) = 'GRG')) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP0A836137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558132 .
?templateMotifSequenceMatchRegionP0A836137 faldo:begin ?templateMotifSequenceMatchBeginP0A836138 .
?templateMotifSequenceMatchBeginP0A836138 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836133 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836139 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558142 .
?targetMotifMatchRegionMatchBeginMF_00558142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558143 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558132, 1, (STRLEN(?templateMotifCigarP0A836MF_00558132) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558132, CONCAT('^(?:-*[^-]){', STR(((321 - ?templateMotifSequenceMatchBeginPositionP0A836133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558134, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558134, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00558135) - 1) AS ?thisPositionOn45) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558132, 1, (STRLEN(?templateMotifCigarP0A836MF_00558132) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558132, CONCAT('^(?:-*[^-]){', STR(((323 - ?templateMotifSequenceMatchBeginPositionP0A836133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558134, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558134, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_00558135) - 1) AS ?thisPositionOn46) .
BIND(?this AS ?pfs2t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) .
FILTER (REGEX('GI[VAMTL]', SUBSTR(?thisSequenceValue, ?thisPositionOn45, (?thisPositionOn46 - ?thisPositionOn45)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP0A836154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558149 .
?templateMotifSequenceMatchRegionP0A836154 faldo:begin ?templateMotifSequenceMatchBeginP0A836155 .
?templateMotifSequenceMatchBeginP0A836155 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836150 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836156 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558159 .
?targetMotifMatchRegionMatchBeginMF_00558159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558160 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558149, 1, (STRLEN(?templateMotifCigarP0A836MF_00558149) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558149, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP0A836150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558151, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558151, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558151) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00558152) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs2t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP0A836169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558164 .
?templateMotifSequenceMatchRegionP0A836169 faldo:begin ?templateMotifSequenceMatchBeginP0A836170 .
?templateMotifSequenceMatchBeginP0A836170 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836165 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836171 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558174 .
?targetMotifMatchRegionMatchBeginMF_00558174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558175 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558164, 1, (STRLEN(?templateMotifCigarP0A836MF_00558164) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558164, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP0A836165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558166, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558166) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558166, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558166) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_00558167) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs2t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionP0A836184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558179 .
?templateMotifSequenceMatchRegionP0A836184 faldo:begin ?templateMotifSequenceMatchBeginP0A836185 .
?templateMotifSequenceMatchBeginP0A836185 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836180 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836186 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558189 .
?targetMotifMatchRegionMatchBeginMF_00558189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558190 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558179, 1, (STRLEN(?templateMotifCigarP0A836MF_00558179) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558179, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP0A836180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558181, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558181) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558181, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558181) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_00558182) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs2t193) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch198 faldo:location ?templateMotifSequenceMatchRegionP0A836199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836201 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558194 .
?templateMotifSequenceMatchRegionP0A836199 faldo:begin ?templateMotifSequenceMatchBeginP0A836200 .
?templateMotifSequenceMatchBeginP0A836200 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836195 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836201 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch202 faldo:location ?targetMotifMatchRegionMatch203 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558205 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558196 .
?targetMotifMatchRegionMatch203 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558204 .
?targetMotifMatchRegionMatchBeginMF_00558204 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558205 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558194, 1, (STRLEN(?templateMotifCigarP0A836MF_00558194) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558194, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP0A836195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558196, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558196) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558196, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558196) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_00558197) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs2t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch213 faldo:location ?templateMotifSequenceMatchRegionP0A836214 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A836216 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A836MF_00558209 .
?templateMotifSequenceMatchRegionP0A836214 faldo:begin ?templateMotifSequenceMatchBeginP0A836215 .
?templateMotifSequenceMatchBeginP0A836215 faldo:position ?templateMotifSequenceMatchBeginPositionP0A836210 ;
faldo:reference isoform:P0A836-1 .
?templateMotifSequenceProfileAlignmentOperationP0A836216 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?targetMotifMatch217 faldo:location ?targetMotifMatchRegionMatch218 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00558220 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A836MF_00558211 .
?targetMotifMatchRegionMatch218 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00558219 .
?targetMotifMatchRegionMatchBeginMF_00558219 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00558212 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00558220 edam:has_input signature:MF_00558 ;
rdf:type edam:operation_0300 .
?this rdfs:seeAlso .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558209, 1, (STRLEN(?templateMotifCigarP0A836MF_00558209) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558209, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP0A836210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558211, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558211) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558211, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558211) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) .
BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_00558212) - 1) AS ?thisPositionOn80) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A836MF_00558209, 1, (STRLEN(?templateMotifCigarP0A836MF_00558209) - STRLEN(REPLACE(?templateMotifCigarP0A836MF_00558209, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionP0A836210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1223) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A836MF_00558211, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558211) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A836MF_00558211, 1, (STRLEN(?targetMotifMatchCigarP0A836MF_00558211) - STRLEN(REPLACE(?targetMotifMatchCigarP0A836MF_00558211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), '')))), '[^-]', ''))) AS ?step2224) .
BIND(((?step2224 + ?targetMotifMatchRegionMatchBeginPositionMF_00558212) - 1) AS ?thisPositionOn81) .
BIND(?this AS ?pfs3t225) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse79) .
FILTER ((BOUND(?thisPositionOn80) && BOUND(?thisPositionOn81))) .
BIND(URI(CONCAT(STR(?this), '#MF_00558a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag226) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag226, ?UNBOUND_VARIABLE) AS ?case11) .
}
"xsd:string |
