| http://purl.uniprot.org/unirules/MF_00743#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:272318 up:source unirule:MF_00743 .
_:272319 up:source unirule:MF_00743 .
_:272320 up:source unirule:MF_00743 .
_:272321 up:source unirule:MF_00743 .
_:272322 up:source unirule:MF_00743 .
_:272323 up:source unirule:MF_00743 .
_:272324 up:source unirule:MF_00743 .
_:272325 up:source unirule:MF_00743 .
_:272326 up:source unirule:MF_00743 .
_:272327 up:source unirule:MF_00743 .
_:272328 up:source unirule:MF_00743 .
_:272329 up:source unirule:MF_00743 .
_:272330 up:source unirule:MF_00743 .
_:272331 up:source unirule:MF_00743 .
_:272332 up:source unirule:MF_00743 .
_:272333 up:source unirule:MF_00743 .
_:272334 up:source unirule:MF_00743 .
_:272335 up:source unirule:MF_00743 .
_:272336 up:source unirule:MF_00743 .
_:272337 up:source unirule:MF_00743 .
_:272338 up:source unirule:MF_00743 .
_:272339 up:source unirule:MF_00743 .
_:272340 up:source unirule:MF_00743 .
_:272341 up:source unirule:MF_00743 .
_:272342 up:source unirule:MF_00743 .
_:272343 up:source unirule:MF_00743 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation11 ,
?annotation12 ;
up:classifiedWith GO:0004333 ,
GO:0005737 ,
GO:0006099 ,
keyword:456 ,
keyword:816 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.2' ;
up:fullName 'Fumarate hydratase class II' ;
up:shortName 'Fumarase C' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Aerobic fumarase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Iron-independent fumarase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'fumC' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate metabolism; tricarboxylic acid cycle; (S)-malate from fumarate: step 1/1.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Annotation ;
rdfs:comment 'There are 2 substrate-binding sites: the catalytic A site, and the non-catalytic B site that may play a role in the transfer of substrate or product between the active site and the solvent. Alternatively, the B site may bind allosteric effectors.' .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf ?molecule18 .
?molecule18 rdfs:label 'substrate' .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in site B' .
?pfsb23 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf ?molecule26 .
?molecule26 rdfs:label 'substrate' .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf ?molecule34 .
?molecule34 rdfs:label 'substrate' .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf ?molecule42 .
?molecule42 rdfs:label 'substrate' .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Active_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf ?molecule62 .
?molecule62 rdfs:label 'substrate' .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf ?molecule70 .
?molecule70 rdfs:label 'substrate' .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity' .
?pfsb75 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
_:272344 a rdf:Statement ;
up:attribution _:272318 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:272345 a rdf:Statement ;
up:attribution _:272319 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:272346 a rdf:Statement ;
up:attribution _:272320 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:272347 a rdf:Statement ;
up:attribution _:272321 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:272348 a rdf:Statement ;
up:attribution _:272322 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:272349 a rdf:Statement ;
up:attribution _:272323 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:272350 a rdf:Statement ;
up:attribution _:272324 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:272351 a rdf:Statement ;
up:attribution _:272325 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:272352 a rdf:Statement ;
up:attribution _:272326 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:272353 a rdf:Statement ;
up:attribution _:272327 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:272354 a rdf:Statement ;
up:attribution _:272328 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:272355 a rdf:Statement ;
up:attribution _:272329 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:272356 a rdf:Statement ;
up:attribution _:272330 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:272357 a rdf:Statement ;
up:attribution _:272331 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:816 .
_:272358 a rdf:Statement ;
up:attribution _:272332 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004333 .
_:272359 a rdf:Statement ;
up:attribution _:272333 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006099 .
_:272360 a rdf:Statement ;
up:attribution _:272334 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:272361 a rdf:Statement ;
up:source unirule:MF_00743 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:272362 a rdf:Statement ;
up:attribution _:272335 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:272363 a rdf:Statement ;
up:source unirule:MF_00743 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:272364 a rdf:Statement ;
up:attribution _:272336 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:272365 a rdf:Statement ;
up:source unirule:MF_00743 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:272366 a rdf:Statement ;
up:attribution _:272337 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:272367 a rdf:Statement ;
up:source unirule:MF_00743 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:272368 a rdf:Statement ;
up:attribution _:272338 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:272369 a rdf:Statement ;
up:source unirule:MF_00743 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:272370 a rdf:Statement ;
up:attribution _:272339 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:272371 a rdf:Statement ;
up:source unirule:MF_00743 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:272372 a rdf:Statement ;
up:attribution _:272340 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:272373 a rdf:Statement ;
up:source unirule:MF_00743 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:272374 a rdf:Statement ;
up:attribution _:272341 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:272375 a rdf:Statement ;
up:source unirule:MF_00743 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:272376 a rdf:Statement ;
up:attribution _:272342 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:272377 a rdf:Statement ;
up:source unirule:MF_00743 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:272378 a rdf:Statement ;
up:attribution _:272343 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00743
#Rule MF_00743 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-11-28
VALUES ?supertaxon79 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00743 .
?thisOrganism rdfs:subClassOf+ ?supertaxon79 .
BIND(URI(CONCAT(STR(?this), '#MF_00743a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP9WN9385 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WN9387 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WN93MF_0074380 .
?templateMotifSequenceMatchRegionP9WN9385 faldo:begin ?templateMotifSequenceMatchBeginP9WN9386 .
?templateMotifSequenceMatchBeginP9WN9386 faldo:position ?templateMotifSequenceMatchBeginPositionP9WN9381 ;
faldo:reference isoform:P9WN93-1 .
?templateMotifSequenceProfileAlignmentOperationP9WN9387 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0074391 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WN93MF_0074382 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0074390 .
?targetMotifMatchRegionMatchBeginMF_0074390 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0074383 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0074391 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_0074380, 1, (STRLEN(?templateMotifCigarP9WN93MF_0074380) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_0074380, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP9WN9381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_0074382, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_0074382) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_0074382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_0074382, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_0074382) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_0074382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0074383) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_0074380, 1, (STRLEN(?templateMotifCigarP9WN93MF_0074380) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_0074380, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP9WN9381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_0074382, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_0074382) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_0074382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_0074382, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_0074382) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_0074382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0074383) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse16) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]T', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionP9WN93102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WN93104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WN93MF_0074397 .
?templateMotifSequenceMatchRegionP9WN93102 faldo:begin ?templateMotifSequenceMatchBeginP9WN93103 .
?templateMotifSequenceMatchBeginP9WN93103 faldo:position ?templateMotifSequenceMatchBeginPositionP9WN9398 ;
faldo:reference isoform:P9WN93-1 .
?templateMotifSequenceProfileAlignmentOperationP9WN93104 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00743108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WN93MF_0074399 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00743107 .
?targetMotifMatchRegionMatchBeginMF_00743107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00743100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00743108 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_0074397, 1, (STRLEN(?templateMotifCigarP9WN93MF_0074397) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_0074397, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP9WN9398) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_0074399, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_0074399) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_0074399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_0074399, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_0074399) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_0074399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_00743100) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_0074397, 1, (STRLEN(?templateMotifCigarP9WN93MF_0074397) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_0074397, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP9WN9398) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_0074399, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_0074399) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_0074399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_0074399, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_0074399) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_0074399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_00743100) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse24) .
FILTER (REGEX('[HN][ARNDCQEGHILKMFPSTWYVBZJUOX]ND', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP9WN93119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WN93121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WN93MF_00743114 .
?templateMotifSequenceMatchRegionP9WN93119 faldo:begin ?templateMotifSequenceMatchBeginP9WN93120 .
?templateMotifSequenceMatchBeginP9WN93120 faldo:position ?templateMotifSequenceMatchBeginPositionP9WN93115 ;
faldo:reference isoform:P9WN93-1 .
?templateMotifSequenceProfileAlignmentOperationP9WN93121 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00743125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WN93MF_00743116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00743124 .
?targetMotifMatchRegionMatchBeginMF_00743124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00743117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00743125 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_00743114, 1, (STRLEN(?templateMotifCigarP9WN93MF_00743114) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_00743114, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP9WN93115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743116, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743116) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743116, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743116) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_00743117) - 1) AS ?thisPositionOn35) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_00743114, 1, (STRLEN(?templateMotifCigarP9WN93MF_00743114) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_00743114, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP9WN93115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743116, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743116) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743116, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743116) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_00743117) - 1) AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse32) .
FILTER (REGEX('S[ST]N', SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP9WN93136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WN93138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WN93MF_00743131 .
?templateMotifSequenceMatchRegionP9WN93136 faldo:begin ?templateMotifSequenceMatchBeginP9WN93137 .
?templateMotifSequenceMatchBeginP9WN93137 faldo:position ?templateMotifSequenceMatchBeginPositionP9WN93132 ;
faldo:reference isoform:P9WN93-1 .
?templateMotifSequenceProfileAlignmentOperationP9WN93138 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00743142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WN93MF_00743133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00743141 .
?targetMotifMatchRegionMatchBeginMF_00743141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00743134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00743142 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_00743131, 1, (STRLEN(?templateMotifCigarP9WN93MF_00743131) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_00743131, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionP9WN93132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743133, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743133) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743133, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743133) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_00743134) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_00743131, 1, (STRLEN(?templateMotifCigarP9WN93MF_00743131) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_00743131, CONCAT('^(?:-*[^-]){', STR(((326 - ?templateMotifSequenceMatchBeginPositionP9WN93132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743133, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743133) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743133, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743133) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_00743134) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse40) .
FILTER (REGEX('K[ARNDCQEGHILKMFPSTWYVBZJUOX]N', SUBSTR(?thisSequenceValue, ?thisPositionOn43, (?thisPositionOn44 - ?thisPositionOn43)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP9WN93153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WN93155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WN93MF_00743148 .
?templateMotifSequenceMatchRegionP9WN93153 faldo:begin ?templateMotifSequenceMatchBeginP9WN93154 .
?templateMotifSequenceMatchBeginP9WN93154 faldo:position ?templateMotifSequenceMatchBeginPositionP9WN93149 ;
faldo:reference isoform:P9WN93-1 .
?templateMotifSequenceProfileAlignmentOperationP9WN93155 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00743159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WN93MF_00743150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00743158 .
?targetMotifMatchRegionMatchBeginMF_00743158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00743151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00743159 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_00743148, 1, (STRLEN(?templateMotifCigarP9WN93MF_00743148) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_00743148, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP9WN93149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743150, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743150) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743150, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743150) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_00743151) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP9WN93168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WN93170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WN93MF_00743163 .
?templateMotifSequenceMatchRegionP9WN93168 faldo:begin ?templateMotifSequenceMatchBeginP9WN93169 .
?templateMotifSequenceMatchBeginP9WN93169 faldo:position ?templateMotifSequenceMatchBeginPositionP9WN93164 ;
faldo:reference isoform:P9WN93-1 .
?templateMotifSequenceProfileAlignmentOperationP9WN93170 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00743174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WN93MF_00743165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00743173 .
?targetMotifMatchRegionMatchBeginMF_00743173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00743166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00743174 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_00743163, 1, (STRLEN(?templateMotifCigarP9WN93MF_00743163) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_00743163, CONCAT('^(?:-*[^-]){', STR(((318 - ?templateMotifSequenceMatchBeginPositionP9WN93164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743165, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743165) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743165, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743165) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_00743166) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP9WN93183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WN93185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WN93MF_00743178 .
?templateMotifSequenceMatchRegionP9WN93183 faldo:begin ?templateMotifSequenceMatchBeginP9WN93184 .
?templateMotifSequenceMatchBeginP9WN93184 faldo:position ?templateMotifSequenceMatchBeginPositionP9WN93179 ;
faldo:reference isoform:P9WN93-1 .
?templateMotifSequenceProfileAlignmentOperationP9WN93185 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00743189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WN93MF_00743180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00743188 .
?targetMotifMatchRegionMatchBeginMF_00743188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00743181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00743189 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_00743178, 1, (STRLEN(?templateMotifCigarP9WN93MF_00743178) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_00743178, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionP9WN93179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743180, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743180) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743180, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743180) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00743181) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionP9WN93198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WN93200 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WN93MF_00743193 .
?templateMotifSequenceMatchRegionP9WN93198 faldo:begin ?templateMotifSequenceMatchBeginP9WN93199 .
?templateMotifSequenceMatchBeginP9WN93199 faldo:position ?templateMotifSequenceMatchBeginPositionP9WN93194 ;
faldo:reference isoform:P9WN93-1 .
?templateMotifSequenceProfileAlignmentOperationP9WN93200 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00743204 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WN93MF_00743195 .
?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00743203 .
?targetMotifMatchRegionMatchBeginMF_00743203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00743196 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00743204 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_00743193, 1, (STRLEN(?templateMotifCigarP9WN93MF_00743193) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_00743193, CONCAT('^(?:-*[^-]){', STR(((319 - ?templateMotifSequenceMatchBeginPositionP9WN93194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743195, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743195) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743195, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743195) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_00743196) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t207) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP9WN93213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WN93215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WN93MF_00743208 .
?templateMotifSequenceMatchRegionP9WN93213 faldo:begin ?templateMotifSequenceMatchBeginP9WN93214 .
?templateMotifSequenceMatchBeginP9WN93214 faldo:position ?templateMotifSequenceMatchBeginPositionP9WN93209 ;
faldo:reference isoform:P9WN93-1 .
?templateMotifSequenceProfileAlignmentOperationP9WN93215 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00743219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WN93MF_00743210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00743218 .
?targetMotifMatchRegionMatchBeginMF_00743218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00743211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00743219 edam:has_input signature:MF_00743 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WN93MF_00743208, 1, (STRLEN(?templateMotifCigarP9WN93MF_00743208) - STRLEN(REPLACE(?templateMotifCigarP9WN93MF_00743208, CONCAT('^(?:-*[^-]){', STR(((331 - ?templateMotifSequenceMatchBeginPositionP9WN93209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743210, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743210) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WN93MF_00743210, 1, (STRLEN(?targetMotifMatchCigarP9WN93MF_00743210) - STRLEN(REPLACE(?targetMotifMatchCigarP9WN93MF_00743210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_00743211) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t222) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00743a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
}
"xsd:string |
