| http://purl.uniprot.org/unirules/MF_00842#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:299142 up:source unirule:MF_00842 .
_:299143 up:source unirule:MF_00842 .
_:299144 up:source unirule:MF_00842 .
_:299145 up:source unirule:MF_00842 .
_:299146 up:source unirule:MF_00842 .
_:299147 up:source unirule:MF_00842 .
_:299148 up:source unirule:MF_00842 .
_:299149 up:source unirule:MF_00842 .
_:299150 up:source unirule:MF_00842 .
_:299151 up:source unirule:MF_00842 .
_:299152 up:source unirule:MF_00842 .
_:299153 up:source unirule:MF_00842 .
_:299154 up:source unirule:MF_00842 .
_:299155 up:source unirule:MF_00842 .
_:299156 up:source unirule:MF_00842 .
_:299157 up:source unirule:MF_00842 .
_:299158 up:source unirule:MF_00842 .
_:299159 up:source unirule:MF_00842 .
_:299160 up:source unirule:MF_00842 .
_:299161 up:source unirule:MF_00842 .
_:299162 up:source unirule:MF_00842 .
_:299163 up:source unirule:MF_00842 .
_:299164 up:source unirule:MF_00842 .
_:299165 up:source unirule:MF_00842 .
_:299166 up:source unirule:MF_00842 .
_:299167 up:source unirule:MF_00842 .
_:299168 up:source unirule:MF_00842 .
_:299169 up:source unirule:MF_00842 .
_:299170 up:source unirule:MF_00842 .
_:299171 up:source unirule:MF_00842 .
_:299172 up:source unirule:MF_00842 .
_:299173 up:source unirule:MF_00842 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0009279 ,
GO:0015288 ,
GO:0034220 ,
keyword:1134 ,
keyword:406 ,
keyword:472 ,
keyword:626 ,
keyword:812 ,
keyword:813 ,
keyword:998 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Outer membrane protein A' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Outer membrane porin A' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'ompA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'With TolR probably plays a role in maintaining the position of the peptidoglycan cell wall in the periplasm. Acts as a porin with low permeability that allows slow penetration of small solutes; an internal gate slows down solute passage.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Monomer and homodimer.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Domain_Annotation ;
rdfs:comment 'The extracellular loops are most variable in sequence, and in some bacteria confer sensitivity to phage and/or colicins.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the outer membrane OOP (TC 1.B.6) superfamily. OmpA family.' .
?case9 up:classifiedWith keyword:1015 .
?case10 up:classifiedWith keyword:184 .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Beta stranded' .
?pfsb61 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Part of salt bridge gating mechanism' .
?pfsb67 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Part of salt bridge gating mechanism' .
?pfsb73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?sam77 up:classifiedWith keyword:732 .
?signal78 faldo:begin ?signalb79 ;
faldo:end ?signale80 .
?signalb79 faldo:position ?signalbp81 .
?signale80 faldo:position ?signalep82 .
?keyword83 up:range ?signal78 .
_:299174 a rdf:Statement ;
up:attribution _:299142 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:299175 a rdf:Statement ;
up:attribution _:299143 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:299176 a rdf:Statement ;
up:attribution _:299144 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:299177 a rdf:Statement ;
up:attribution _:299145 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:299178 a rdf:Statement ;
up:attribution _:299146 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:299179 a rdf:Statement ;
up:attribution _:299147 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:299180 a rdf:Statement ;
up:attribution _:299148 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:299181 a rdf:Statement ;
up:attribution _:299149 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:299182 a rdf:Statement ;
up:attribution _:299150 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:998 .
_:299183 a rdf:Statement ;
up:attribution _:299151 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:406 .
_:299184 a rdf:Statement ;
up:attribution _:299152 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:299185 a rdf:Statement ;
up:attribution _:299153 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:626 .
_:299186 a rdf:Statement ;
up:attribution _:299154 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:299187 a rdf:Statement ;
up:attribution _:299155 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1134 .
_:299188 a rdf:Statement ;
up:attribution _:299156 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:299189 a rdf:Statement ;
up:attribution _:299157 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009279 .
_:299190 a rdf:Statement ;
up:attribution _:299158 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0034220 .
_:299191 a rdf:Statement ;
up:attribution _:299159 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015288 .
_:299192 a rdf:Statement ;
up:attribution _:299160 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:299193 a rdf:Statement ;
up:attribution _:299161 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:184 .
_:299194 a rdf:Statement ;
up:source unirule:MF_00842 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:299195 a rdf:Statement ;
up:attribution _:299162 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:299196 a rdf:Statement ;
up:source unirule:MF_00842 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:299197 a rdf:Statement ;
up:attribution _:299163 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:299198 a rdf:Statement ;
up:source unirule:MF_00842 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:299199 a rdf:Statement ;
up:attribution _:299164 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:299200 a rdf:Statement ;
up:source unirule:MF_00842 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:299201 a rdf:Statement ;
up:attribution _:299165 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:299202 a rdf:Statement ;
up:source unirule:MF_00842 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:299203 a rdf:Statement ;
up:attribution _:299166 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:299204 a rdf:Statement ;
up:source unirule:MF_00842 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:299205 a rdf:Statement ;
up:attribution _:299167 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:299206 a rdf:Statement ;
up:source unirule:MF_00842 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:299207 a rdf:Statement ;
up:attribution _:299168 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:299208 a rdf:Statement ;
up:source unirule:MF_00842 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:299209 a rdf:Statement ;
up:attribution _:299169 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:299210 a rdf:Statement ;
up:source unirule:MF_00842 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:299211 a rdf:Statement ;
up:attribution _:299170 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:299212 a rdf:Statement ;
up:source unirule:MF_00842 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:299213 a rdf:Statement ;
up:attribution _:299171 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:299214 a rdf:Statement ;
up:source unirule:MF_00842 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:299215 a rdf:Statement ;
up:attribution _:299172 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:299216 a rdf:Statement ;
up:attribution _:299173 ;
rdf:subject ?sam77 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00842
#Rule MF_00842 Created by:? on:2019-04-25 Modified by:Catherine Rivoire on:2023-02-07
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00842 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_00842a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP0A91089 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A91091 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A910MF_0084284 .
?templateMotifSequenceMatchRegionP0A91089 faldo:begin ?templateMotifSequenceMatchBeginP0A91090 .
?templateMotifSequenceMatchBeginP0A91090 faldo:position ?templateMotifSequenceMatchBeginPositionP0A91085 ;
faldo:reference isoform:P0A910-1 .
?templateMotifSequenceProfileAlignmentOperationP0A91091 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0084295 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A910MF_0084286 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0084294 .
?targetMotifMatchRegionMatchBeginMF_0084294 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0084287 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0084295 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagDisulfide) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_0084284, 1, (STRLEN(?templateMotifCigarP0A910MF_0084284) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_0084284, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionP0A91085) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_0084286, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_0084286) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_0084286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_0084286, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_0084286) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_0084286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0084287) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_0084284, 1, (STRLEN(?templateMotifCigarP0A910MF_0084284) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_0084284, CONCAT('^(?:-*[^-]){', STR(((323 - ?templateMotifSequenceMatchBeginPositionP0A91085) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_0084286, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_0084286) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_0084286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_0084286, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_0084286) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_0084286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0084287) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP0A910106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A910MF_00842101 .
?templateMotifSequenceMatchRegionP0A910106 faldo:begin ?templateMotifSequenceMatchBeginP0A910107 .
?templateMotifSequenceMatchBeginP0A910107 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910102 ;
faldo:reference isoform:P0A910-1 .
?templateMotifSequenceProfileAlignmentOperationP0A910108 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A910MF_00842103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842111 .
?targetMotifMatchRegionMatchBeginMF_00842111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00842112 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842101, 1, (STRLEN(?templateMotifCigarP0A910MF_00842101) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842101, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP0A910102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842103, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842103, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_00842104) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842101, 1, (STRLEN(?templateMotifCigarP0A910MF_00842101) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842101, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP0A910102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842103, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842103, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_00842104) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs2t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP0A910123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A910MF_00842118 .
?templateMotifSequenceMatchRegionP0A910123 faldo:begin ?templateMotifSequenceMatchBeginP0A910124 .
?templateMotifSequenceMatchBeginP0A910124 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910119 ;
faldo:reference isoform:P0A910-1 .
?templateMotifSequenceProfileAlignmentOperationP0A910125 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A910MF_00842120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842128 .
?targetMotifMatchRegionMatchBeginMF_00842128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00842129 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842118, 1, (STRLEN(?templateMotifCigarP0A910MF_00842118) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842118, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP0A910119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842120, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842120, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_00842121) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842118, 1, (STRLEN(?templateMotifCigarP0A910MF_00842118) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842118, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0A910119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842120, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842120, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00842121) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs2t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((BOUND(?thisPositionOn27) && BOUND(?thisPositionOn28))) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP0A910140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A910MF_00842135 .
?templateMotifSequenceMatchRegionP0A910140 faldo:begin ?templateMotifSequenceMatchBeginP0A910141 .
?templateMotifSequenceMatchBeginP0A910141 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910136 ;
faldo:reference isoform:P0A910-1 .
?templateMotifSequenceProfileAlignmentOperationP0A910142 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A910MF_00842137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842145 .
?targetMotifMatchRegionMatchBeginMF_00842145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00842146 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842135, 1, (STRLEN(?templateMotifCigarP0A910MF_00842135) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842135, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionP0A910136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842137, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842137, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00842138) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842135, 1, (STRLEN(?templateMotifCigarP0A910MF_00842135) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842135, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP0A910136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842137, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842137, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00842138) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs2t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((BOUND(?thisPositionOn33) && BOUND(?thisPositionOn34))) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP0A910157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A910MF_00842152 .
?templateMotifSequenceMatchRegionP0A910157 faldo:begin ?templateMotifSequenceMatchBeginP0A910158 .
?templateMotifSequenceMatchBeginP0A910158 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910153 ;
faldo:reference isoform:P0A910-1 .
?templateMotifSequenceProfileAlignmentOperationP0A910159 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A910MF_00842154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842162 .
?targetMotifMatchRegionMatchBeginMF_00842162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00842163 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842152, 1, (STRLEN(?templateMotifCigarP0A910MF_00842152) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842152, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionP0A910153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842154, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842154) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842154, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842154) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00842155) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842152, 1, (STRLEN(?templateMotifCigarP0A910MF_00842152) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842152, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP0A910153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842154, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842154) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842154, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842154) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00842155) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs2t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((BOUND(?thisPositionOn39) && BOUND(?thisPositionOn40))) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP0A910174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A910MF_00842169 .
?templateMotifSequenceMatchRegionP0A910174 faldo:begin ?templateMotifSequenceMatchBeginP0A910175 .
?templateMotifSequenceMatchBeginP0A910175 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910170 ;
faldo:reference isoform:P0A910-1 .
?templateMotifSequenceProfileAlignmentOperationP0A910176 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A910MF_00842171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842179 .
?targetMotifMatchRegionMatchBeginMF_00842179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00842180 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842169, 1, (STRLEN(?templateMotifCigarP0A910MF_00842169) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842169, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP0A910170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842171, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842171, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00842172) - 1) AS ?thisPositionOn45) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842169, 1, (STRLEN(?templateMotifCigarP0A910MF_00842169) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842169, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP0A910170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842171, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842171, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_00842172) - 1) AS ?thisPositionOn46) .
BIND(?this AS ?pfs2t185) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((BOUND(?thisPositionOn45) && BOUND(?thisPositionOn46))) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionP0A910191 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910193 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A910MF_00842186 .
?templateMotifSequenceMatchRegionP0A910191 faldo:begin ?templateMotifSequenceMatchBeginP0A910192 .
?templateMotifSequenceMatchBeginP0A910192 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910187 ;
faldo:reference isoform:P0A910-1 .
?templateMotifSequenceProfileAlignmentOperationP0A910193 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842197 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A910MF_00842188 .
?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842196 .
?targetMotifMatchRegionMatchBeginMF_00842196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842189 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00842197 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842186, 1, (STRLEN(?templateMotifCigarP0A910MF_00842186) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842186, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionP0A910187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842188, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842188) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842188, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842188) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_00842189) - 1) AS ?thisPositionOn51) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842186, 1, (STRLEN(?templateMotifCigarP0A910MF_00842186) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842186, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP0A910187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842188, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842188) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842188, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842188) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_00842189) - 1) AS ?thisPositionOn52) .
BIND(?this AS ?pfs2t202) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) .
FILTER ((BOUND(?thisPositionOn51) && BOUND(?thisPositionOn52))) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionP0A910208 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910210 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A910MF_00842203 .
?templateMotifSequenceMatchRegionP0A910208 faldo:begin ?templateMotifSequenceMatchBeginP0A910209 .
?templateMotifSequenceMatchBeginP0A910209 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910204 ;
faldo:reference isoform:P0A910-1 .
?templateMotifSequenceProfileAlignmentOperationP0A910210 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842214 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A910MF_00842205 .
?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842213 .
?targetMotifMatchRegionMatchBeginMF_00842213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842206 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00842214 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842203, 1, (STRLEN(?templateMotifCigarP0A910MF_00842203) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842203, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP0A910204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842205, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842205) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842205, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842205) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00842206) - 1) AS ?thisPositionOn57) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842203, 1, (STRLEN(?templateMotifCigarP0A910MF_00842203) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842203, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP0A910204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842205, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842205) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842205, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842205) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_00842206) - 1) AS ?thisPositionOn58) .
BIND(?this AS ?pfs2t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) .
FILTER ((BOUND(?thisPositionOn57) && BOUND(?thisPositionOn58))) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP0A910225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A910MF_00842220 .
?templateMotifSequenceMatchRegionP0A910225 faldo:begin ?templateMotifSequenceMatchBeginP0A910226 .
?templateMotifSequenceMatchBeginP0A910226 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910221 ;
faldo:reference isoform:P0A910-1 .
?templateMotifSequenceProfileAlignmentOperationP0A910227 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A910MF_00842222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842230 .
?targetMotifMatchRegionMatchBeginMF_00842230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00842231 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842220, 1, (STRLEN(?templateMotifCigarP0A910MF_00842220) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842220, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionP0A910221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842222, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842222) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842222, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842222) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_00842223) - 1) AS ?thisPositionOn63) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842220, 1, (STRLEN(?templateMotifCigarP0A910MF_00842220) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842220, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP0A910221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842222, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842222) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842222, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842222) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_00842223) - 1) AS ?thisPositionOn64) .
BIND(?this AS ?pfs2t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse62) .
FILTER ((BOUND(?thisPositionOn63) && BOUND(?thisPositionOn64))) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionP0A910242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A910MF_00842237 .
?templateMotifSequenceMatchRegionP0A910242 faldo:begin ?templateMotifSequenceMatchBeginP0A910243 .
?templateMotifSequenceMatchBeginP0A910243 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910238 ;
faldo:reference isoform:P0A910-1 .
?templateMotifSequenceProfileAlignmentOperationP0A910244 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A910MF_00842239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842247 .
?targetMotifMatchRegionMatchBeginMF_00842247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00842248 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842237, 1, (STRLEN(?templateMotifCigarP0A910MF_00842237) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842237, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP0A910238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842239, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842239) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842239, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842239) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_00842240) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs2t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionP0A910257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A910259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A910MF_00842252 .
?templateMotifSequenceMatchRegionP0A910257 faldo:begin ?templateMotifSequenceMatchBeginP0A910258 .
?templateMotifSequenceMatchBeginP0A910258 faldo:position ?templateMotifSequenceMatchBeginPositionP0A910253 ;
faldo:reference isoform:P0A910-1 .
?templateMotifSequenceProfileAlignmentOperationP0A910259 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00842263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A910MF_00842254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00842262 .
?targetMotifMatchRegionMatchBeginMF_00842262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00842255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00842263 edam:has_input signature:MF_00842 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A910MF_00842252, 1, (STRLEN(?templateMotifCigarP0A910MF_00842252) - STRLEN(REPLACE(?templateMotifCigarP0A910MF_00842252, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP0A910253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A910MF_00842254, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842254) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A910MF_00842254, 1, (STRLEN(?targetMotifMatchCigarP0A910MF_00842254) - STRLEN(REPLACE(?targetMotifMatchCigarP0A910MF_00842254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_00842255) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs2t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00842a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag267) .
}
BIND(IF(BOUND(?tagDisulfide), ?caseWithTag267, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon268 {taxon:561 taxon:620 taxon:590 taxon:570 taxon:551}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon268 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this up:annotation ?samsignal269 ;
up:sequence ?thisSequence .
?samsignal269 up:range ?samsignalr270 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr270 faldo:begin ?samsignalb271 ;
faldo:end ?samsignale272 .
?samsignalb271 faldo:position ?samsignalbp273 ;
faldo:reference ?thisSequence .
?samsignale272 faldo:position ?samsignalep274 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam77) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00842a83')) AS ?keyword83) .
}
"xsd:string |
