| http://purl.uniprot.org/unirules/MF_00905#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:314807 up:source unirule:MF_00905 .
_:314808 up:source unirule:MF_00905 .
_:314809 up:source unirule:MF_00905 .
_:314810 up:source unirule:MF_00905 .
_:314811 up:source unirule:MF_00905 .
_:314812 up:source unirule:MF_00905 .
_:314813 up:source unirule:MF_00905 .
_:314814 up:source unirule:MF_00905 .
_:314815 up:source unirule:MF_00905 .
_:314816 up:source unirule:MF_00905 .
_:314817 up:source unirule:MF_00905 .
_:314818 up:source unirule:MF_00905 .
_:314819 up:source unirule:MF_00905 .
_:314820 up:source unirule:MF_00905 .
_:314821 up:source unirule:MF_00905 .
_:314822 up:source unirule:MF_00905 .
_:314823 up:source unirule:MF_00905 .
_:314824 up:source unirule:MF_00905 .
_:314825 up:source unirule:MF_00905 .
_:314826 up:source unirule:MF_00905 .
_:314827 up:source unirule:MF_00905 .
_:314828 up:source unirule:MF_00905 .
_:314829 up:source unirule:MF_00905 .
_:314830 up:source unirule:MF_00905 .
_:314831 up:source unirule:MF_00905 .
_:314832 up:source unirule:MF_00905 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0000166 ,
GO:0004115 ,
GO:0046872 ,
keyword:114 ,
keyword:378 ,
keyword:408 ,
keyword:479 ,
keyword:547 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.4.53' ;
up:fullName "3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA" ;
up:shortName "3',5'-cyclic AMP phosphodiesterase" ,
'cAMP phosphodiesterase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'cpdA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment "Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes." .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:29033 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 Fe(2+) ions per subunit.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the cyclic nucleotide phosphodiesterase class-III family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:456215 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:24875 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:24875 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:24875 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:24875 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:24875 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:24875 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:24875 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:24875 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:456215 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:456215 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:456215 .
_:314833 a rdf:Statement ;
up:attribution _:314807 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:314834 a rdf:Statement ;
up:attribution _:314808 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:314835 a rdf:Statement ;
up:attribution _:314809 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:314836 a rdf:Statement ;
up:attribution _:314810 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:314837 a rdf:Statement ;
up:attribution _:314811 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:314838 a rdf:Statement ;
up:attribution _:314812 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:314839 a rdf:Statement ;
up:attribution _:314813 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:114 .
_:314840 a rdf:Statement ;
up:attribution _:314814 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:314841 a rdf:Statement ;
up:attribution _:314815 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:314842 a rdf:Statement ;
up:attribution _:314816 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:314843 a rdf:Statement ;
up:attribution _:314817 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:314844 a rdf:Statement ;
up:attribution _:314818 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004115 .
_:314845 a rdf:Statement ;
up:attribution _:314819 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:314846 a rdf:Statement ;
up:attribution _:314820 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:314847 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:314848 a rdf:Statement ;
up:attribution _:314821 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:314849 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:314850 a rdf:Statement ;
up:attribution _:314822 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:314851 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:314852 a rdf:Statement ;
up:attribution _:314823 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:314853 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:314854 a rdf:Statement ;
up:attribution _:314824 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:314855 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:314856 a rdf:Statement ;
up:attribution _:314825 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:314857 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:314858 a rdf:Statement ;
up:attribution _:314826 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:314859 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:314860 a rdf:Statement ;
up:attribution _:314827 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:314861 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:314862 a rdf:Statement ;
up:attribution _:314828 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:314863 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:314864 a rdf:Statement ;
up:attribution _:314829 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:314865 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:314866 a rdf:Statement ;
up:attribution _:314830 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:314867 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:314868 a rdf:Statement ;
up:attribution _:314831 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:314869 a rdf:Statement ;
up:source unirule:MF_00905 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:314870 a rdf:Statement ;
up:attribution _:314832 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00905
#Rule MF_00905 Created by:? on:2011-08-17 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00905 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_00905a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionP0AEW496 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW498 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_0090591 .
?templateMotifSequenceMatchRegionP0AEW496 faldo:begin ?templateMotifSequenceMatchBeginP0AEW497 .
?templateMotifSequenceMatchBeginP0AEW497 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW492 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW498 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_0090593 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905101 .
?targetMotifMatchRegionMatchBeginMF_00905101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0090594 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905102 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_0090591, 1, (STRLEN(?templateMotifCigarP0AEW4MF_0090591) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_0090591, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP0AEW492) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_0090593, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_0090593) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_0090593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_0090593, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_0090593) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_0090593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0090594) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_0090591, 1, (STRLEN(?templateMotifCigarP0AEW4MF_0090591) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_0090591, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP0AEW492) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_0090593, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_0090593) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_0090593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_0090593, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_0090593) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_0090593, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0090594) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)) = 'NH')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP0AEW4113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_00905108 .
?templateMotifSequenceMatchRegionP0AEW4113 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4114 .
?templateMotifSequenceMatchBeginP0AEW4114 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4109 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW4115 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_00905110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905118 .
?targetMotifMatchRegionMatchBeginMF_00905118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905119 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905108, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905108) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905108, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP0AEW4109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905110, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905110) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905110, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905110) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00905111) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP0AEW4128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_00905123 .
?templateMotifSequenceMatchRegionP0AEW4128 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4129 .
?templateMotifSequenceMatchBeginP0AEW4129 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4124 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW4130 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_00905125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905133 .
?targetMotifMatchRegionMatchBeginMF_00905133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905134 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905123, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905123) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905123, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP0AEW4124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905125, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905125) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905125, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905125) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00905126) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionP0AEW4143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_00905138 .
?templateMotifSequenceMatchRegionP0AEW4143 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4144 .
?templateMotifSequenceMatchBeginP0AEW4144 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4139 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW4145 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_00905140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905148 .
?targetMotifMatchRegionMatchBeginMF_00905148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905149 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905138, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905138) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905138, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP0AEW4139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905140, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905140) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905140, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905140) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00905141) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP0AEW4158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_00905153 .
?templateMotifSequenceMatchRegionP0AEW4158 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4159 .
?templateMotifSequenceMatchBeginP0AEW4159 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4154 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW4160 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_00905155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905163 .
?targetMotifMatchRegionMatchBeginMF_00905163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905164 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905153, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905153) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905153, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP0AEW4154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905155, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905155) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905155, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905155) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00905156) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionP0AEW4173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_00905168 .
?templateMotifSequenceMatchRegionP0AEW4173 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4174 .
?templateMotifSequenceMatchBeginP0AEW4174 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4169 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW4175 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_00905170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905178 .
?targetMotifMatchRegionMatchBeginMF_00905178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905179 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905168, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905168) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905168, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP0AEW4169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905170, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905170) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905170, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905170) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00905171) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP0AEW4188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_00905183 .
?templateMotifSequenceMatchRegionP0AEW4188 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4189 .
?templateMotifSequenceMatchBeginP0AEW4189 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4184 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW4190 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_00905185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905193 .
?targetMotifMatchRegionMatchBeginMF_00905193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905194 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905183, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905183) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905183, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP0AEW4184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905185, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905185, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00905186) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP0AEW4203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_00905198 .
?templateMotifSequenceMatchRegionP0AEW4203 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4204 .
?templateMotifSequenceMatchBeginP0AEW4204 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4199 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW4205 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_00905200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905208 .
?targetMotifMatchRegionMatchBeginMF_00905208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905209 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905198, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905198) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905198, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP0AEW4199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905200, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905200) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905200, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905200) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00905201) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionP0AEW4218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_00905213 .
?templateMotifSequenceMatchRegionP0AEW4218 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4219 .
?templateMotifSequenceMatchBeginP0AEW4219 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4214 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW4220 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_00905215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905223 .
?targetMotifMatchRegionMatchBeginMF_00905223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905224 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905213, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905213) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905213, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP0AEW4214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905215, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905215) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905215, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905215) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_00905216) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionP0AEW4233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_00905228 .
?templateMotifSequenceMatchRegionP0AEW4233 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4234 .
?templateMotifSequenceMatchBeginP0AEW4234 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4229 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW4235 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_00905230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905238 .
?targetMotifMatchRegionMatchBeginMF_00905238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905239 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905228, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905228) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905228, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP0AEW4229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905230, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905230) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905230, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905230) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_00905231) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionP0AEW4248 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4250 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_00905243 .
?templateMotifSequenceMatchRegionP0AEW4248 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4249 .
?templateMotifSequenceMatchBeginP0AEW4249 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4244 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW4250 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905254 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_00905245 .
?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905253 .
?targetMotifMatchRegionMatchBeginMF_00905253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905246 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905254 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905243, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905243) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905243, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP0AEW4244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905245, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905245) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905245, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905245) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) .
BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_00905246) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t257) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch262 faldo:location ?templateMotifSequenceMatchRegionP0AEW4263 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AEW4265 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AEW4MF_00905258 .
?templateMotifSequenceMatchRegionP0AEW4263 faldo:begin ?templateMotifSequenceMatchBeginP0AEW4264 .
?templateMotifSequenceMatchBeginP0AEW4264 faldo:position ?templateMotifSequenceMatchBeginPositionP0AEW4259 ;
faldo:reference isoform:P0AEW4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AEW4265 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
?targetMotifMatch266 faldo:location ?targetMotifMatchRegionMatch267 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00905269 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AEW4MF_00905260 .
?targetMotifMatchRegionMatch267 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00905268 .
?targetMotifMatchRegionMatchBeginMF_00905268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00905261 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00905269 edam:has_input signature:MF_00905 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AEW4MF_00905258, 1, (STRLEN(?templateMotifCigarP0AEW4MF_00905258) - STRLEN(REPLACE(?templateMotifCigarP0AEW4MF_00905258, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP0AEW4259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905260, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905260) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AEW4MF_00905260, 1, (STRLEN(?targetMotifMatchCigarP0AEW4MF_00905260) - STRLEN(REPLACE(?targetMotifMatchCigarP0AEW4MF_00905260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_00905261) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00905a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
}
"xsd:string |
