| http://purl.uniprot.org/unirules/MF_00956#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:332799 up:source unirule:MF_00956 .
_:332800 up:source unirule:MF_00956 .
_:332801 up:source unirule:MF_00956 .
_:332802 up:source unirule:MF_00956 .
_:332803 up:source unirule:MF_00956 .
_:332804 up:source unirule:MF_00956 .
_:332805 up:source unirule:MF_00956 .
_:332806 up:source unirule:MF_00956 .
_:332807 up:source unirule:MF_00956 .
_:332808 up:source unirule:MF_00956 .
_:332809 up:source unirule:MF_00956 .
_:332810 up:source unirule:MF_00956 .
_:332811 up:source unirule:MF_00956 .
_:332812 up:source unirule:MF_00956 .
_:332813 up:source unirule:MF_00956 .
_:332814 up:source unirule:MF_00956 .
_:332815 up:source unirule:MF_00956 .
_:332816 up:source unirule:MF_00956 .
_:332817 up:source unirule:MF_00956 .
_:332818 up:source unirule:MF_00956 .
_:332819 up:source unirule:MF_00956 .
_:332820 up:source unirule:MF_00956 .
_:332821 up:source unirule:MF_00956 .
_:332822 up:source unirule:MF_00956 .
_:332823 up:source unirule:MF_00956 .
_:332824 up:source unirule:MF_00956 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0042351 ,
GO:0050577 ,
GO:0070401 ,
keyword:413 ,
keyword:511 ,
keyword:521 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.271' ;
up:fullName 'GDP-L-fucose synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'fcl' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Nucleotide-sugar biosynthesis; GDP-L-fucose biosynthesis via de novo pathway; GDP-L-fucose from GDP-alpha-D-mannose: step 2/2.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NAD(P)-dependent epimerase/dehydratase family. Fucose synthase subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:58349 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:58349 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:58349 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:58349 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:58349 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf ?molecule54 .
?molecule54 rdfs:label 'substrate' .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf ?molecule62 .
?molecule62 rdfs:label 'substrate' .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf ?molecule70 .
?molecule70 rdfs:label 'substrate' .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf ?molecule78 .
?molecule78 rdfs:label 'substrate' .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity' .
?pfsb83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity' .
?pfsb89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
_:332825 a rdf:Statement ;
up:attribution _:332799 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:332826 a rdf:Statement ;
up:attribution _:332800 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:332827 a rdf:Statement ;
up:attribution _:332801 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:332828 a rdf:Statement ;
up:attribution _:332802 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:332829 a rdf:Statement ;
up:attribution _:332803 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:332830 a rdf:Statement ;
up:attribution _:332804 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:332831 a rdf:Statement ;
up:attribution _:332805 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:332832 a rdf:Statement ;
up:attribution _:332806 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:332833 a rdf:Statement ;
up:attribution _:332807 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:332834 a rdf:Statement ;
up:attribution _:332808 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:332835 a rdf:Statement ;
up:attribution _:332809 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:332836 a rdf:Statement ;
up:attribution _:332810 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050577 .
_:332837 a rdf:Statement ;
up:attribution _:332811 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070401 .
_:332838 a rdf:Statement ;
up:attribution _:332812 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042351 .
_:332839 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:332840 a rdf:Statement ;
up:attribution _:332813 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:332841 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:332842 a rdf:Statement ;
up:attribution _:332814 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:332843 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:332844 a rdf:Statement ;
up:attribution _:332815 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:332845 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:332846 a rdf:Statement ;
up:attribution _:332816 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:332847 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:332848 a rdf:Statement ;
up:attribution _:332817 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:332849 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:332850 a rdf:Statement ;
up:attribution _:332818 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:332851 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:332852 a rdf:Statement ;
up:attribution _:332819 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:332853 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:332854 a rdf:Statement ;
up:attribution _:332820 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:332855 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:332856 a rdf:Statement ;
up:attribution _:332821 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:332857 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:332858 a rdf:Statement ;
up:attribution _:332822 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:332859 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:332860 a rdf:Statement ;
up:attribution _:332823 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:332861 a rdf:Statement ;
up:source unirule:MF_00956 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:332862 a rdf:Statement ;
up:attribution _:332824 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00956
#Rule MF_00956 Created by:? on:2013-04-12 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon93 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00956 .
?thisOrganism rdfs:subClassOf+ ?supertaxon93 .
BIND(URI(CONCAT(STR(?this), '#MF_00956a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP3205599 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_0095694 .
?templateMotifSequenceMatchRegionP3205599 faldo:begin ?templateMotifSequenceMatchBeginP32055100 .
?templateMotifSequenceMatchBeginP32055100 faldo:position ?templateMotifSequenceMatchBeginPositionP3205595 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055101 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_0095696 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956104 .
?targetMotifMatchRegionMatchBeginMF_00956104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0095697 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956105 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_0095694, 1, (STRLEN(?templateMotifCigarP32055MF_0095694) - STRLEN(REPLACE(?templateMotifCigarP32055MF_0095694, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP3205595) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_0095696, 1, (STRLEN(?targetMotifMatchCigarP32055MF_0095696) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_0095696, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_0095696, 1, (STRLEN(?targetMotifMatchCigarP32055MF_0095696) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_0095696, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0095697) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_0095694, 1, (STRLEN(?templateMotifCigarP32055MF_0095694) - STRLEN(REPLACE(?templateMotifCigarP32055MF_0095694, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP3205595) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_0095696, 1, (STRLEN(?targetMotifMatchCigarP32055MF_0095696) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_0095696, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_0095696, 1, (STRLEN(?targetMotifMatchCigarP32055MF_0095696) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_0095696, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0095697) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP32055116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_00956111 .
?templateMotifSequenceMatchRegionP32055116 faldo:begin ?templateMotifSequenceMatchBeginP32055117 .
?templateMotifSequenceMatchBeginP32055117 faldo:position ?templateMotifSequenceMatchBeginPositionP32055112 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055118 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_00956113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956121 .
?targetMotifMatchRegionMatchBeginMF_00956121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00956114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956122 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956111, 1, (STRLEN(?templateMotifCigarP32055MF_00956111) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956111, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP32055112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956113, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956113) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956113, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956113) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00956114) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956111, 1, (STRLEN(?templateMotifCigarP32055MF_00956111) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956111, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP32055112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956113, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956113) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956113, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956113) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_00956114) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[MILV][GA][ST][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP32055133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_00956128 .
?templateMotifSequenceMatchRegionP32055133 faldo:begin ?templateMotifSequenceMatchBeginP32055134 .
?templateMotifSequenceMatchBeginP32055134 faldo:position ?templateMotifSequenceMatchBeginPositionP32055129 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055135 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_00956130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956138 .
?targetMotifMatchRegionMatchBeginMF_00956138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00956131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956139 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956128, 1, (STRLEN(?templateMotifCigarP32055MF_00956128) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956128, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP32055129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956130, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956130) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956130, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956130) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00956131) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956128, 1, (STRLEN(?templateMotifCigarP32055MF_00956128) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956128, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP32055129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956130, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956130) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956130, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956130) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_00956131) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('P[ARNDCQEGHILKMFPSTWYVBZJUOX]N[IVL]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionP32055150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_00956145 .
?templateMotifSequenceMatchRegionP32055150 faldo:begin ?templateMotifSequenceMatchBeginP32055151 .
?templateMotifSequenceMatchBeginP32055151 faldo:position ?templateMotifSequenceMatchBeginPositionP32055146 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055152 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_00956147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956155 .
?targetMotifMatchRegionMatchBeginMF_00956155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00956148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956156 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956145, 1, (STRLEN(?templateMotifCigarP32055MF_00956145) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956145, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP32055146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956147, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956147) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956147, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956147) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_00956148) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP32055165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_00956160 .
?templateMotifSequenceMatchRegionP32055165 faldo:begin ?templateMotifSequenceMatchBeginP32055166 .
?templateMotifSequenceMatchBeginP32055166 faldo:position ?templateMotifSequenceMatchBeginPositionP32055161 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055167 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_00956162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956170 .
?targetMotifMatchRegionMatchBeginMF_00956170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00956163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956171 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956160, 1, (STRLEN(?templateMotifCigarP32055MF_00956160) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956160, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP32055161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956162, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956162) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956162, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956162) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_00956163) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP32055180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_00956175 .
?templateMotifSequenceMatchRegionP32055180 faldo:begin ?templateMotifSequenceMatchBeginP32055181 .
?templateMotifSequenceMatchBeginP32055181 faldo:position ?templateMotifSequenceMatchBeginPositionP32055176 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055182 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_00956177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956185 .
?targetMotifMatchRegionMatchBeginMF_00956185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00956178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956186 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956175, 1, (STRLEN(?templateMotifCigarP32055MF_00956175) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956175, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP32055176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956177, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956177) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956177, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956177) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_00956178) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP32055195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_00956190 .
?templateMotifSequenceMatchRegionP32055195 faldo:begin ?templateMotifSequenceMatchBeginP32055196 .
?templateMotifSequenceMatchBeginP32055196 faldo:position ?templateMotifSequenceMatchBeginPositionP32055191 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055197 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_00956192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956200 .
?targetMotifMatchRegionMatchBeginMF_00956200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00956193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956201 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956190, 1, (STRLEN(?templateMotifCigarP32055MF_00956190) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956190, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP32055191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956192, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956192) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956192, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956192) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_00956193) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse52) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP32055210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_00956205 .
?templateMotifSequenceMatchRegionP32055210 faldo:begin ?templateMotifSequenceMatchBeginP32055211 .
?templateMotifSequenceMatchBeginP32055211 faldo:position ?templateMotifSequenceMatchBeginPositionP32055206 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055212 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_00956207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956215 .
?targetMotifMatchRegionMatchBeginMF_00956215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00956208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956216 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956205, 1, (STRLEN(?templateMotifCigarP32055MF_00956205) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956205, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP32055206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956207, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956207) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956207, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956207) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_00956208) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP32055225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_00956220 .
?templateMotifSequenceMatchRegionP32055225 faldo:begin ?templateMotifSequenceMatchBeginP32055226 .
?templateMotifSequenceMatchBeginP32055226 faldo:position ?templateMotifSequenceMatchBeginPositionP32055221 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055227 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_00956222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956230 .
?targetMotifMatchRegionMatchBeginMF_00956230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00956223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956231 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956220, 1, (STRLEN(?templateMotifCigarP32055MF_00956220) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956220, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP32055221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956222, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956222) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956222, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956222) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_00956223) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP32055240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_00956235 .
?templateMotifSequenceMatchRegionP32055240 faldo:begin ?templateMotifSequenceMatchBeginP32055241 .
?templateMotifSequenceMatchBeginP32055241 faldo:position ?templateMotifSequenceMatchBeginPositionP32055236 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055242 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_00956237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956245 .
?targetMotifMatchRegionMatchBeginMF_00956245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00956238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956246 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956235, 1, (STRLEN(?templateMotifCigarP32055MF_00956235) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956235, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionP32055236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956237, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956237) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956237, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956237) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_00956238) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse76) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP32055255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_00956250 .
?templateMotifSequenceMatchRegionP32055255 faldo:begin ?templateMotifSequenceMatchBeginP32055256 .
?templateMotifSequenceMatchBeginP32055256 faldo:position ?templateMotifSequenceMatchBeginPositionP32055251 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055257 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_00956252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956260 .
?targetMotifMatchRegionMatchBeginMF_00956260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00956253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956261 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956250, 1, (STRLEN(?templateMotifCigarP32055MF_00956250) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956250, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP32055251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956252, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956252) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956252, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956252) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_00956253) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse84) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP32055270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32055272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32055MF_00956265 .
?templateMotifSequenceMatchRegionP32055270 faldo:begin ?templateMotifSequenceMatchBeginP32055271 .
?templateMotifSequenceMatchBeginP32055271 faldo:position ?templateMotifSequenceMatchBeginPositionP32055266 ;
faldo:reference isoform:P32055-1 .
?templateMotifSequenceProfileAlignmentOperationP32055272 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00956276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32055MF_00956267 .
?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00956275 .
?targetMotifMatchRegionMatchBeginMF_00956275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00956268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00956276 edam:has_input signature:MF_00956 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32055MF_00956265, 1, (STRLEN(?templateMotifCigarP32055MF_00956265) - STRLEN(REPLACE(?templateMotifCigarP32055MF_00956265, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP32055266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32055MF_00956267, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956267) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32055MF_00956267, 1, (STRLEN(?targetMotifMatchCigarP32055MF_00956267) - STRLEN(REPLACE(?targetMotifMatchCigarP32055MF_00956267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_00956268) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00956a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
}
"xsd:string |
