| http://purl.uniprot.org/unirules/MF_01010#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:352956 up:source unirule:MF_01010 .
_:352957 up:source unirule:MF_01010 .
_:352958 up:source unirule:MF_01010 .
_:352959 up:source unirule:MF_01010 .
_:352960 up:source unirule:MF_01010 .
_:352961 up:source unirule:MF_01010 .
_:352962 up:source unirule:MF_01010 .
_:352963 up:source unirule:MF_01010 .
_:352964 up:source unirule:MF_01010 .
_:352965 up:source unirule:MF_01010 .
_:352966 up:source unirule:MF_01010 .
_:352967 up:source unirule:MF_01010 .
_:352968 up:source unirule:MF_01010 .
_:352969 up:source unirule:MF_01010 .
_:352970 up:source unirule:MF_01010 .
_:352971 up:source unirule:MF_01010 .
_:352972 up:source unirule:MF_01010 .
_:352973 up:source unirule:MF_01010 .
_:352974 up:source unirule:MF_01010 .
_:352975 up:source unirule:MF_01010 .
_:352976 up:source unirule:MF_01010 .
_:352977 up:source unirule:MF_01010 .
_:352978 up:source unirule:MF_01010 .
_:352979 up:source unirule:MF_01010 .
_:352980 up:source unirule:MF_01010 .
_:352981 up:source unirule:MF_01010 .
_:352982 up:source unirule:MF_01010 .
_:352983 up:source unirule:MF_01010 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0031167 ,
GO:0070041 ,
keyword:489 ,
keyword:698 ,
keyword:808 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.190' ;
up:fullName '23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD' ;
rdf:type up:Structured_Name .
?name1 up:fullName '23S rRNA(m5U1939)-methyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'rlmD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.' .
?case7 up:classifiedWith GO:0005506 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:49883 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:49883 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:49883 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:49883 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:59789 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:59789 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:59789 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:59789 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:59789 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:59789 .
_:352984 a rdf:Statement ;
up:attribution _:352956 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:352985 a rdf:Statement ;
up:attribution _:352957 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:352986 a rdf:Statement ;
up:attribution _:352958 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:352987 a rdf:Statement ;
up:attribution _:352959 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:352988 a rdf:Statement ;
up:attribution _:352960 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:352989 a rdf:Statement ;
up:attribution _:352961 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:352990 a rdf:Statement ;
up:attribution _:352962 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:352991 a rdf:Statement ;
up:attribution _:352963 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:352992 a rdf:Statement ;
up:attribution _:352964 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:352993 a rdf:Statement ;
up:attribution _:352965 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:352994 a rdf:Statement ;
up:attribution _:352966 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070041 .
_:352995 a rdf:Statement ;
up:attribution _:352967 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031167 .
_:352996 a rdf:Statement ;
up:attribution _:352968 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:352997 a rdf:Statement ;
up:attribution _:352969 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:352998 a rdf:Statement ;
up:attribution _:352970 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:352999 a rdf:Statement ;
up:attribution _:352971 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:353000 a rdf:Statement ;
up:attribution _:352972 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:353001 a rdf:Statement ;
up:source unirule:MF_01010 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:353002 a rdf:Statement ;
up:attribution _:352973 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:353003 a rdf:Statement ;
up:source unirule:MF_01010 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:353004 a rdf:Statement ;
up:attribution _:352974 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:353005 a rdf:Statement ;
up:source unirule:MF_01010 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:353006 a rdf:Statement ;
up:attribution _:352975 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:353007 a rdf:Statement ;
up:source unirule:MF_01010 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:353008 a rdf:Statement ;
up:attribution _:352976 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:353009 a rdf:Statement ;
up:source unirule:MF_01010 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:353010 a rdf:Statement ;
up:attribution _:352977 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:353011 a rdf:Statement ;
up:source unirule:MF_01010 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:353012 a rdf:Statement ;
up:attribution _:352978 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:353013 a rdf:Statement ;
up:source unirule:MF_01010 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:353014 a rdf:Statement ;
up:attribution _:352979 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:353015 a rdf:Statement ;
up:source unirule:MF_01010 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:353016 a rdf:Statement ;
up:attribution _:352980 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:353017 a rdf:Statement ;
up:source unirule:MF_01010 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:353018 a rdf:Statement ;
up:attribution _:352981 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:353019 a rdf:Statement ;
up:source unirule:MF_01010 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:353020 a rdf:Statement ;
up:attribution _:352982 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:353021 a rdf:Statement ;
up:source unirule:MF_01010 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:353022 a rdf:Statement ;
up:attribution _:352983 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01010
#Rule MF_01010 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01010 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01010a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01010a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01010a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01010a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01010a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP5513586 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5513588 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55135MF_0101081 .
?templateMotifSequenceMatchRegionP5513586 faldo:begin ?templateMotifSequenceMatchBeginP5513587 .
?templateMotifSequenceMatchBeginP5513587 faldo:position ?templateMotifSequenceMatchBeginPositionP5513582 ;
faldo:reference isoform:P55135-1 .
?templateMotifSequenceProfileAlignmentOperationP5513588 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0101092 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55135MF_0101083 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0101091 .
?targetMotifMatchRegionMatchBeginMF_0101091 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0101084 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0101092 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_0101081, 1, (STRLEN(?templateMotifCigarP55135MF_0101081) - STRLEN(REPLACE(?templateMotifCigarP55135MF_0101081, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionP5513582) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0101084) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_0101081, 1, (STRLEN(?templateMotifCigarP55135MF_0101081) - STRLEN(REPLACE(?templateMotifCigarP55135MF_0101081, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP5513582) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0101084) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_0101081, 1, (STRLEN(?templateMotifCigarP55135MF_0101081) - STRLEN(REPLACE(?templateMotifCigarP55135MF_0101081, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionP5513582) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0101084) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_0101081, 1, (STRLEN(?templateMotifCigarP55135MF_0101081) - STRLEN(REPLACE(?templateMotifCigarP55135MF_0101081, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP5513582) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0101084) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP55135110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55135MF_01010105 .
?templateMotifSequenceMatchRegionP55135110 faldo:begin ?templateMotifSequenceMatchBeginP55135111 .
?templateMotifSequenceMatchBeginP55135111 faldo:position ?templateMotifSequenceMatchBeginPositionP55135106 ;
faldo:reference isoform:P55135-1 .
?templateMotifSequenceProfileAlignmentOperationP55135112 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55135MF_01010107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010115 .
?targetMotifMatchRegionMatchBeginMF_01010115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01010116 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010105, 1, (STRLEN(?templateMotifCigarP55135MF_01010105) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010105, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionP55135106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010107, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010107) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010107, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010107) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01010108) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01010a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP55135125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55135MF_01010120 .
?templateMotifSequenceMatchRegionP55135125 faldo:begin ?templateMotifSequenceMatchBeginP55135126 .
?templateMotifSequenceMatchBeginP55135126 faldo:position ?templateMotifSequenceMatchBeginPositionP55135121 ;
faldo:reference isoform:P55135-1 .
?templateMotifSequenceProfileAlignmentOperationP55135127 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55135MF_01010122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010130 .
?targetMotifMatchRegionMatchBeginMF_01010130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01010131 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010120, 1, (STRLEN(?templateMotifCigarP55135MF_01010120) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010120, CONCAT('^(?:-*[^-]){', STR(((265 - ?templateMotifSequenceMatchBeginPositionP55135121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010122, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010122) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010122, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010122) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01010123) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01010a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP55135140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55135MF_01010135 .
?templateMotifSequenceMatchRegionP55135140 faldo:begin ?templateMotifSequenceMatchBeginP55135141 .
?templateMotifSequenceMatchBeginP55135141 faldo:position ?templateMotifSequenceMatchBeginPositionP55135136 ;
faldo:reference isoform:P55135-1 .
?templateMotifSequenceProfileAlignmentOperationP55135142 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55135MF_01010137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010145 .
?targetMotifMatchRegionMatchBeginMF_01010145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01010146 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010135, 1, (STRLEN(?templateMotifCigarP55135MF_01010135) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010135, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionP55135136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010137, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010137) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010137, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010137) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01010138) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs2t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_01010a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP55135155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55135MF_01010150 .
?templateMotifSequenceMatchRegionP55135155 faldo:begin ?templateMotifSequenceMatchBeginP55135156 .
?templateMotifSequenceMatchBeginP55135156 faldo:position ?templateMotifSequenceMatchBeginPositionP55135151 ;
faldo:reference isoform:P55135-1 .
?templateMotifSequenceProfileAlignmentOperationP55135157 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55135MF_01010152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010160 .
?targetMotifMatchRegionMatchBeginMF_01010160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01010161 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010150, 1, (STRLEN(?templateMotifCigarP55135MF_01010150) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010150, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionP55135151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010152, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010152) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010152, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010152) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01010153) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs2t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01010a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP55135170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55135MF_01010165 .
?templateMotifSequenceMatchRegionP55135170 faldo:begin ?templateMotifSequenceMatchBeginP55135171 .
?templateMotifSequenceMatchBeginP55135171 faldo:position ?templateMotifSequenceMatchBeginPositionP55135166 ;
faldo:reference isoform:P55135-1 .
?templateMotifSequenceProfileAlignmentOperationP55135172 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55135MF_01010167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010175 .
?targetMotifMatchRegionMatchBeginMF_01010175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01010176 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010165, 1, (STRLEN(?templateMotifCigarP55135MF_01010165) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010165, CONCAT('^(?:-*[^-]){', STR(((315 - ?templateMotifSequenceMatchBeginPositionP55135166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010167, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010167) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010167, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010167) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_01010168) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs2t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01010a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP55135185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55135MF_01010180 .
?templateMotifSequenceMatchRegionP55135185 faldo:begin ?templateMotifSequenceMatchBeginP55135186 .
?templateMotifSequenceMatchBeginP55135186 faldo:position ?templateMotifSequenceMatchBeginPositionP55135181 ;
faldo:reference isoform:P55135-1 .
?templateMotifSequenceProfileAlignmentOperationP55135187 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010191 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55135MF_01010182 .
?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010190 .
?targetMotifMatchRegionMatchBeginMF_01010190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010183 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01010191 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010180, 1, (STRLEN(?templateMotifCigarP55135MF_01010180) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010180, CONCAT('^(?:-*[^-]){', STR(((342 - ?templateMotifSequenceMatchBeginPositionP55135181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010182, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010182) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010182, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010182) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_01010183) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs2t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER (REGEX('[ND]', SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01010a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP55135200 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135202 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55135MF_01010195 .
?templateMotifSequenceMatchRegionP55135200 faldo:begin ?templateMotifSequenceMatchBeginP55135201 .
?templateMotifSequenceMatchBeginP55135201 faldo:position ?templateMotifSequenceMatchBeginPositionP55135196 ;
faldo:reference isoform:P55135-1 .
?templateMotifSequenceProfileAlignmentOperationP55135202 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010206 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55135MF_01010197 .
?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010205 .
?targetMotifMatchRegionMatchBeginMF_01010205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01010206 edam:has_input signature:MF_01010 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010195, 1, (STRLEN(?templateMotifCigarP55135MF_01010195) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010195, CONCAT('^(?:-*[^-]){', STR(((363 - ?templateMotifSequenceMatchBeginPositionP55135196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010197, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010197) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010197, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010197) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_01010198) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs2t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01010a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag210) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag210, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
