| http://purl.uniprot.org/unirules/MF_01060#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:371702 up:source unirule:MF_01060 .
_:371703 up:source unirule:MF_01060 .
_:371704 up:source unirule:MF_01060 .
_:371705 up:source unirule:MF_01060 .
_:371706 up:source unirule:MF_01060 .
_:371707 up:source unirule:MF_01060 .
_:371708 up:source unirule:MF_01060 .
_:371709 up:source unirule:MF_01060 .
_:371710 up:source unirule:MF_01060 .
_:371711 up:source unirule:MF_01060 .
_:371712 up:source unirule:MF_01060 .
_:371713 up:source unirule:MF_01060 .
_:371714 up:source unirule:MF_01060 .
_:371715 up:source unirule:MF_01060 .
_:371716 up:source unirule:MF_01060 .
_:371717 up:source unirule:MF_01060 .
_:371718 up:source unirule:MF_01060 .
_:371719 up:source unirule:MF_01060 .
_:371720 up:source unirule:MF_01060 .
_:371721 up:source unirule:MF_01060 .
_:371722 up:source unirule:MF_01060 .
_:371723 up:source unirule:MF_01060 .
_:371724 up:source unirule:MF_01060 .
_:371725 up:source unirule:MF_01060 .
_:371726 up:source unirule:MF_01060 .
_:371727 up:source unirule:MF_01060 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0004555 ,
GO:0005991 ,
GO:0042597 ,
keyword:326 ,
keyword:378 ,
keyword:574 ,
keyword:732 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:ecName '3.2.1.28' ;
up:fullName 'Periplasmic trehalase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Alpha,alpha-trehalase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Alpha,alpha-trehalose glucohydrolase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'treA' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glycosyl hydrolase 37 family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf ?molecule16 .
?molecule16 rdfs:label 'substrate' .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf ?molecule24 .
?molecule24 rdfs:label 'substrate' .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf ?molecule32 .
?molecule32 rdfs:label 'substrate' .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf ?molecule52 .
?molecule52 rdfs:label 'substrate' .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf ?molecule60 .
?molecule60 rdfs:label 'substrate' .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf ?molecule68 .
?molecule68 rdfs:label 'substrate' .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf ?molecule76 .
?molecule76 rdfs:label 'substrate' .
?sam79 up:classifiedWith keyword:732 .
?signal80 faldo:begin ?signalb81 ;
faldo:end ?signale82 .
?signalb81 faldo:position ?signalbp83 .
?signale82 faldo:position ?signalep84 .
?keyword85 up:range ?signal80 .
_:371728 a rdf:Statement ;
up:attribution _:371702 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:371729 a rdf:Statement ;
up:attribution _:371703 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:371730 a rdf:Statement ;
up:attribution _:371704 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:371731 a rdf:Statement ;
up:attribution _:371705 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:371732 a rdf:Statement ;
up:attribution _:371706 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:371733 a rdf:Statement ;
up:attribution _:371707 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:371734 a rdf:Statement ;
up:attribution _:371708 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:371735 a rdf:Statement ;
up:attribution _:371709 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:371736 a rdf:Statement ;
up:attribution _:371710 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:371737 a rdf:Statement ;
up:attribution _:371711 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:371738 a rdf:Statement ;
up:attribution _:371712 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:326 .
_:371739 a rdf:Statement ;
up:attribution _:371713 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:574 .
_:371740 a rdf:Statement ;
up:attribution _:371714 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:371741 a rdf:Statement ;
up:attribution _:371715 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004555 .
_:371742 a rdf:Statement ;
up:attribution _:371716 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005991 .
_:371743 a rdf:Statement ;
up:attribution _:371717 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042597 .
_:371744 a rdf:Statement ;
up:source unirule:MF_01060 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:371745 a rdf:Statement ;
up:attribution _:371718 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:371746 a rdf:Statement ;
up:source unirule:MF_01060 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:371747 a rdf:Statement ;
up:attribution _:371719 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:371748 a rdf:Statement ;
up:source unirule:MF_01060 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:371749 a rdf:Statement ;
up:attribution _:371720 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:371750 a rdf:Statement ;
up:source unirule:MF_01060 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:371751 a rdf:Statement ;
up:attribution _:371721 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:371752 a rdf:Statement ;
up:source unirule:MF_01060 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:371753 a rdf:Statement ;
up:attribution _:371722 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:371754 a rdf:Statement ;
up:source unirule:MF_01060 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:371755 a rdf:Statement ;
up:attribution _:371723 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:371756 a rdf:Statement ;
up:source unirule:MF_01060 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:371757 a rdf:Statement ;
up:attribution _:371724 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:371758 a rdf:Statement ;
up:source unirule:MF_01060 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:371759 a rdf:Statement ;
up:attribution _:371725 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:371760 a rdf:Statement ;
up:source unirule:MF_01060 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:371761 a rdf:Statement ;
up:attribution _:371726 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:371762 a rdf:Statement ;
up:attribution _:371727 ;
rdf:subject ?sam79 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01060
#Rule MF_01060 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-11-28
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01060 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01060a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP1348291 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1348293 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13482MF_0106086 .
?templateMotifSequenceMatchRegionP1348291 faldo:begin ?templateMotifSequenceMatchBeginP1348292 .
?templateMotifSequenceMatchBeginP1348292 faldo:position ?templateMotifSequenceMatchBeginPositionP1348287 ;
faldo:reference isoform:P13482-1 .
?templateMotifSequenceProfileAlignmentOperationP1348293 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0106097 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13482MF_0106088 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0106096 .
?targetMotifMatchRegionMatchBeginMF_0106096 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0106089 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0106097 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_0106086, 1, (STRLEN(?templateMotifCigarP13482MF_0106086) - STRLEN(REPLACE(?templateMotifCigarP13482MF_0106086, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP1348287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_0106088, 1, (STRLEN(?targetMotifMatchCigarP13482MF_0106088) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_0106088, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_0106088, 1, (STRLEN(?targetMotifMatchCigarP13482MF_0106088) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_0106088, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0106089) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_0106086, 1, (STRLEN(?templateMotifCigarP13482MF_0106086) - STRLEN(REPLACE(?templateMotifCigarP13482MF_0106086, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP1348287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_0106088, 1, (STRLEN(?targetMotifMatchCigarP13482MF_0106088) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_0106088, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_0106088, 1, (STRLEN(?targetMotifMatchCigarP13482MF_0106088) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_0106088, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0106089) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)) = 'WD')) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionP13482108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13482110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13482MF_01060103 .
?templateMotifSequenceMatchRegionP13482108 faldo:begin ?templateMotifSequenceMatchBeginP13482109 .
?templateMotifSequenceMatchBeginP13482109 faldo:position ?templateMotifSequenceMatchBeginPositionP13482104 ;
faldo:reference isoform:P13482-1 .
?templateMotifSequenceProfileAlignmentOperationP13482110 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01060114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13482MF_01060105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01060113 .
?targetMotifMatchRegionMatchBeginMF_01060113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01060106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01060114 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_01060103, 1, (STRLEN(?templateMotifCigarP13482MF_01060103) - STRLEN(REPLACE(?templateMotifCigarP13482MF_01060103, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP13482104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_01060105, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060105) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_01060105, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060105) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_01060106) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_01060103, 1, (STRLEN(?templateMotifCigarP13482MF_01060103) - STRLEN(REPLACE(?templateMotifCigarP13482MF_01060103, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionP13482104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_01060105, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060105) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_01060105, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060105) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01060106) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse22) .
FILTER (REGEX('[RH]SQ', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP13482125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13482127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13482MF_01060120 .
?templateMotifSequenceMatchRegionP13482125 faldo:begin ?templateMotifSequenceMatchBeginP13482126 .
?templateMotifSequenceMatchBeginP13482126 faldo:position ?templateMotifSequenceMatchBeginPositionP13482121 ;
faldo:reference isoform:P13482-1 .
?templateMotifSequenceProfileAlignmentOperationP13482127 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01060131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13482MF_01060122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01060130 .
?targetMotifMatchRegionMatchBeginMF_01060130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01060123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01060131 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_01060120, 1, (STRLEN(?templateMotifCigarP13482MF_01060120) - STRLEN(REPLACE(?templateMotifCigarP13482MF_01060120, CONCAT('^(?:-*[^-]){', STR(((277 - ?templateMotifSequenceMatchBeginPositionP13482121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_01060122, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060122) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_01060122, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060122) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01060123) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_01060120, 1, (STRLEN(?templateMotifCigarP13482MF_01060120) - STRLEN(REPLACE(?templateMotifCigarP13482MF_01060120, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionP13482121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_01060122, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060122) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_01060122, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060122) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_01060123) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse30) .
FILTER (REGEX('R[PQ]E', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionP13482142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13482144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13482MF_01060137 .
?templateMotifSequenceMatchRegionP13482142 faldo:begin ?templateMotifSequenceMatchBeginP13482143 .
?templateMotifSequenceMatchBeginP13482143 faldo:position ?templateMotifSequenceMatchBeginPositionP13482138 ;
faldo:reference isoform:P13482-1 .
?templateMotifSequenceProfileAlignmentOperationP13482144 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01060148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13482MF_01060139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01060147 .
?targetMotifMatchRegionMatchBeginMF_01060147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01060140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01060148 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_01060137, 1, (STRLEN(?templateMotifCigarP13482MF_01060137) - STRLEN(REPLACE(?templateMotifCigarP13482MF_01060137, CONCAT('^(?:-*[^-]){', STR(((312 - ?templateMotifSequenceMatchBeginPositionP13482138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_01060139, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060139) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_01060139, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060139) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_01060140) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP13482157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13482159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13482MF_01060152 .
?templateMotifSequenceMatchRegionP13482157 faldo:begin ?templateMotifSequenceMatchBeginP13482158 .
?templateMotifSequenceMatchBeginP13482158 faldo:position ?templateMotifSequenceMatchBeginPositionP13482153 ;
faldo:reference isoform:P13482-1 .
?templateMotifSequenceProfileAlignmentOperationP13482159 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01060163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13482MF_01060154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01060162 .
?targetMotifMatchRegionMatchBeginMF_01060162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01060155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01060163 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_01060152, 1, (STRLEN(?templateMotifCigarP13482MF_01060152) - STRLEN(REPLACE(?templateMotifCigarP13482MF_01060152, CONCAT('^(?:-*[^-]){', STR(((496 - ?templateMotifSequenceMatchBeginPositionP13482153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_01060154, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060154) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_01060154, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060154) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_01060155) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP13482172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13482174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13482MF_01060167 .
?templateMotifSequenceMatchRegionP13482172 faldo:begin ?templateMotifSequenceMatchBeginP13482173 .
?templateMotifSequenceMatchBeginP13482173 faldo:position ?templateMotifSequenceMatchBeginPositionP13482168 ;
faldo:reference isoform:P13482-1 .
?templateMotifSequenceProfileAlignmentOperationP13482174 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01060178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13482MF_01060169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01060177 .
?targetMotifMatchRegionMatchBeginMF_01060177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01060170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01060178 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_01060167, 1, (STRLEN(?templateMotifCigarP13482MF_01060167) - STRLEN(REPLACE(?templateMotifCigarP13482MF_01060167, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP13482168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_01060169, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060169) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_01060169, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060169) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_01060170) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t181) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionP13482187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13482189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13482MF_01060182 .
?templateMotifSequenceMatchRegionP13482187 faldo:begin ?templateMotifSequenceMatchBeginP13482188 .
?templateMotifSequenceMatchBeginP13482188 faldo:position ?templateMotifSequenceMatchBeginPositionP13482183 ;
faldo:reference isoform:P13482-1 .
?templateMotifSequenceProfileAlignmentOperationP13482189 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01060193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13482MF_01060184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01060192 .
?targetMotifMatchRegionMatchBeginMF_01060192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01060185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01060193 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_01060182, 1, (STRLEN(?templateMotifCigarP13482MF_01060182) - STRLEN(REPLACE(?templateMotifCigarP13482MF_01060182, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP13482183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_01060184, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060184) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_01060184, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060184) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_01060185) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionP13482202 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13482204 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13482MF_01060197 .
?templateMotifSequenceMatchRegionP13482202 faldo:begin ?templateMotifSequenceMatchBeginP13482203 .
?templateMotifSequenceMatchBeginP13482203 faldo:position ?templateMotifSequenceMatchBeginPositionP13482198 ;
faldo:reference isoform:P13482-1 .
?templateMotifSequenceProfileAlignmentOperationP13482204 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01060208 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13482MF_01060199 .
?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01060207 .
?targetMotifMatchRegionMatchBeginMF_01060207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01060200 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01060208 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_01060197, 1, (STRLEN(?templateMotifCigarP13482MF_01060197) - STRLEN(REPLACE(?templateMotifCigarP13482MF_01060197, CONCAT('^(?:-*[^-]){', STR(((310 - ?templateMotifSequenceMatchBeginPositionP13482198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_01060199, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060199) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_01060199, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060199) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_01060200) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionP13482217 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13482219 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13482MF_01060212 .
?templateMotifSequenceMatchRegionP13482217 faldo:begin ?templateMotifSequenceMatchBeginP13482218 .
?templateMotifSequenceMatchBeginP13482218 faldo:position ?templateMotifSequenceMatchBeginPositionP13482213 ;
faldo:reference isoform:P13482-1 .
?templateMotifSequenceProfileAlignmentOperationP13482219 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01060223 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13482MF_01060214 .
?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01060222 .
?targetMotifMatchRegionMatchBeginMF_01060222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01060215 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01060223 edam:has_input signature:MF_01060 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13482MF_01060212, 1, (STRLEN(?templateMotifCigarP13482MF_01060212) - STRLEN(REPLACE(?templateMotifCigarP13482MF_01060212, CONCAT('^(?:-*[^-]){', STR(((511 - ?templateMotifSequenceMatchBeginPositionP13482213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13482MF_01060214, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060214) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13482MF_01060214, 1, (STRLEN(?targetMotifMatchCigarP13482MF_01060214) - STRLEN(REPLACE(?targetMotifMatchCigarP13482MF_01060214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_01060215) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01060a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this up:annotation ?samsignal227 ;
up:sequence ?thisSequence .
?samsignal227 up:range ?samsignalr228 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr228 faldo:begin ?samsignalb229 ;
faldo:end ?samsignale230 .
?samsignalb229 faldo:position ?samsignalbp231 ;
faldo:reference ?thisSequence .
?samsignale230 faldo:position ?samsignalep232 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam79) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01060a85')) AS ?keyword85) .
}
"xsd:string |
