| http://purl.uniprot.org/unirules/MF_01446#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:523654 up:source unirule:MF_01446 .
_:523655 up:source unirule:MF_01446 .
_:523656 up:source unirule:MF_01446 .
_:523657 up:source unirule:MF_01446 .
_:523658 up:source unirule:MF_01446 .
_:523659 up:source unirule:MF_01446 .
_:523660 up:source unirule:MF_01446 .
_:523661 up:source unirule:MF_01446 .
_:523662 up:source unirule:MF_01446 .
_:523663 up:source unirule:MF_01446 .
_:523664 up:source unirule:MF_01446 .
_:523665 up:source unirule:MF_01446 .
_:523666 up:source unirule:MF_01446 .
_:523667 up:source unirule:MF_01446 .
_:523668 up:source unirule:MF_01446 .
_:523669 up:source unirule:MF_01446 .
_:523670 up:source unirule:MF_01446 .
_:523671 up:source unirule:MF_01446 .
_:523672 up:source unirule:MF_01446 .
_:523673 up:source unirule:MF_01446 .
_:523674 up:source unirule:MF_01446 .
_:523675 up:source unirule:MF_01446 .
_:523676 up:source unirule:MF_01446 .
_:523677 up:source unirule:MF_01446 .
_:523678 up:source unirule:MF_01446 .
_:523679 up:source unirule:MF_01446 .
_:523680 up:source unirule:MF_01446 .
_:523681 up:source unirule:MF_01446 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0002949 ,
GO:0005506 ,
GO:0005737 ,
GO:0016747 ,
keyword:12 ,
keyword:408 ,
keyword:479 ,
keyword:808 ,
keyword:819 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.234' ;
up:fullName 'tRNA N6-adenosine threonylcarbamoyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N6-L-threonylcarbamoyladenine synthase' ;
up:shortName 't(6)A synthase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'tRNA threonylcarbamoyladenosine biosynthesis protein Kae1' ;
rdf:type up:Structured_Name .
?name3 up:fullName 't(6)A37 threonylcarbamoyladenosine biosynthesis protein Kae1' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'kae1' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:29033 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Fe(2+) ion per subunit.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the KAE1 / TsaD family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf ?molecule18 .
?molecule18 rdfs:label 'substrate' .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:24875 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:24875 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:24875 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:24875 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf ?molecule54 .
?molecule54 rdfs:label 'substrate' .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf ?molecule62 .
?molecule62 rdfs:label 'substrate' .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf ?molecule70 .
?molecule70 rdfs:label 'substrate' .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf ?molecule78 .
?molecule78 rdfs:label 'substrate' .
_:523682 a rdf:Statement ;
up:attribution _:523654 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:523683 a rdf:Statement ;
up:attribution _:523655 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:523684 a rdf:Statement ;
up:attribution _:523656 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:523685 a rdf:Statement ;
up:attribution _:523657 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:523686 a rdf:Statement ;
up:attribution _:523658 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:523687 a rdf:Statement ;
up:attribution _:523659 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:523688 a rdf:Statement ;
up:attribution _:523660 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:523689 a rdf:Statement ;
up:attribution _:523661 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:523690 a rdf:Statement ;
up:attribution _:523662 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:523691 a rdf:Statement ;
up:attribution _:523663 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:523692 a rdf:Statement ;
up:attribution _:523664 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:523693 a rdf:Statement ;
up:attribution _:523665 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:523694 a rdf:Statement ;
up:attribution _:523666 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:523695 a rdf:Statement ;
up:attribution _:523667 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:523696 a rdf:Statement ;
up:attribution _:523668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:523697 a rdf:Statement ;
up:attribution _:523669 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:523698 a rdf:Statement ;
up:attribution _:523670 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016747 .
_:523699 a rdf:Statement ;
up:attribution _:523671 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002949 .
_:523700 a rdf:Statement ;
up:attribution _:523672 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:523701 a rdf:Statement ;
up:source unirule:MF_01446 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:523702 a rdf:Statement ;
up:attribution _:523673 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:523703 a rdf:Statement ;
up:source unirule:MF_01446 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:523704 a rdf:Statement ;
up:attribution _:523674 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:523705 a rdf:Statement ;
up:source unirule:MF_01446 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:523706 a rdf:Statement ;
up:attribution _:523675 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:523707 a rdf:Statement ;
up:source unirule:MF_01446 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:523708 a rdf:Statement ;
up:attribution _:523676 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:523709 a rdf:Statement ;
up:source unirule:MF_01446 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:523710 a rdf:Statement ;
up:attribution _:523677 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:523711 a rdf:Statement ;
up:source unirule:MF_01446 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:523712 a rdf:Statement ;
up:attribution _:523678 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:523713 a rdf:Statement ;
up:source unirule:MF_01446 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:523714 a rdf:Statement ;
up:attribution _:523679 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:523715 a rdf:Statement ;
up:source unirule:MF_01446 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:523716 a rdf:Statement ;
up:attribution _:523680 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:523717 a rdf:Statement ;
up:source unirule:MF_01446 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:523718 a rdf:Statement ;
up:attribution _:523681 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01446
#Rule MF_01446 Created by:? on:2007-08-13 Modified by:Catherine Rivoire on:2024-10-08
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01446 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01447 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionQ9UXT786 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT788 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_0144681 .
?templateMotifSequenceMatchRegionQ9UXT786 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT787 .
?templateMotifSequenceMatchBeginQ9UXT787 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT782 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT788 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0144692 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_0144683 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0144691 .
?targetMotifMatchRegionMatchBeginMF_0144691 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0144684 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0144692 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_0144681, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_0144681) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_0144681, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ9UXT782) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_0144683, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_0144683) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_0144683, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_0144683, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_0144683) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_0144683, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0144684) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_0144681, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_0144681) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_0144681, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionQ9UXT782) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_0144683, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_0144683) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_0144683, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_0144683, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_0144683) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_0144683, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0144684) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse16) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][SA]G[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_0144698 .
?templateMotifSequenceMatchRegionQ9UXT7103 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7104 .
?templateMotifSequenceMatchBeginQ9UXT7104 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT799 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7105 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446108 .
?targetMotifMatchRegionMatchBeginMF_01446108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446109 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_0144698, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_0144698) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_0144698, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionQ9UXT799) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446100, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446100, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01446101) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446113 .
?templateMotifSequenceMatchRegionQ9UXT7118 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7119 .
?templateMotifSequenceMatchBeginQ9UXT7119 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7114 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7120 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446123 .
?targetMotifMatchRegionMatchBeginMF_01446123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446124 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446113, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446113) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446113, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ9UXT7114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446115, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446115) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446115, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446115) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01446116) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446128 .
?templateMotifSequenceMatchRegionQ9UXT7133 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7134 .
?templateMotifSequenceMatchBeginQ9UXT7134 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7129 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7135 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446138 .
?targetMotifMatchRegionMatchBeginMF_01446138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446139 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446128, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446128) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446128, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ9UXT7129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446130, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446130) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446130, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446130) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01446131) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446143 .
?templateMotifSequenceMatchRegionQ9UXT7148 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7149 .
?templateMotifSequenceMatchBeginQ9UXT7149 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7144 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7150 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446153 .
?targetMotifMatchRegionMatchBeginMF_01446153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446154 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446143, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446143) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446143, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionQ9UXT7144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446145, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446145) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446145, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446145) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01446146) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446158 .
?templateMotifSequenceMatchRegionQ9UXT7163 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7164 .
?templateMotifSequenceMatchBeginQ9UXT7164 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7159 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7165 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446168 .
?targetMotifMatchRegionMatchBeginMF_01446168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446169 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446158, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446158) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446158, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionQ9UXT7159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446160, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446160) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446160, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446160) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_01446161) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446173 .
?templateMotifSequenceMatchRegionQ9UXT7178 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7179 .
?templateMotifSequenceMatchBeginQ9UXT7179 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7174 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7180 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446183 .
?targetMotifMatchRegionMatchBeginMF_01446183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446184 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446173, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446173) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446173, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionQ9UXT7174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446175, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446175) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446175, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446175) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_01446176) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446188 .
?templateMotifSequenceMatchRegionQ9UXT7193 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7194 .
?templateMotifSequenceMatchBeginQ9UXT7194 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7189 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7195 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446198 .
?targetMotifMatchRegionMatchBeginMF_01446198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446199 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446188, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446188) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446188, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ9UXT7189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446190, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446190) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446190, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446190) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_01446191) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t202) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse68) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionQ9UXT7208 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXT7210 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXT7MF_01446203 .
?templateMotifSequenceMatchRegionQ9UXT7208 faldo:begin ?templateMotifSequenceMatchBeginQ9UXT7209 .
?templateMotifSequenceMatchBeginQ9UXT7209 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXT7204 ;
faldo:reference isoform:Q9UXT7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXT7210 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01446214 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXT7MF_01446205 .
?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01446213 .
?targetMotifMatchRegionMatchBeginMF_01446213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01446206 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01446214 edam:has_input signature:MF_01446 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXT7MF_01446203, 1, (STRLEN(?templateMotifCigarQ9UXT7MF_01446203) - STRLEN(REPLACE(?templateMotifCigarQ9UXT7MF_01446203, CONCAT('^(?:-*[^-]){', STR(((257 - ?templateMotifSequenceMatchBeginPositionQ9UXT7204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446205, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446205) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXT7MF_01446205, 1, (STRLEN(?targetMotifMatchCigarQ9UXT7MF_01446205) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXT7MF_01446205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_01446206) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse76) .
FILTER (REGEX('[NS]', SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01446a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:3366610 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:3366610 .
})) .
BIND(?this AS ?case12) .
}
}
"xsd:string |
