| http://purl.uniprot.org/unirules/MF_01535#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:556896 up:source unirule:MF_01535 .
_:556897 up:source unirule:MF_01535 .
_:556898 up:source unirule:MF_01535 .
_:556899 up:source unirule:MF_01535 .
_:556900 up:source unirule:MF_01535 .
_:556901 up:source unirule:MF_01535 .
_:556902 up:source unirule:MF_01535 .
_:556903 up:source unirule:MF_01535 .
_:556904 up:source unirule:MF_01535 .
_:556905 up:source unirule:MF_01535 .
_:556906 up:source unirule:MF_01535 .
_:556907 up:source unirule:MF_01535 .
_:556908 up:source unirule:MF_01535 .
_:556909 up:source unirule:MF_01535 .
_:556910 up:source unirule:MF_01535 .
_:556911 up:source unirule:MF_01535 .
_:556912 up:source unirule:MF_01535 .
_:556913 up:source unirule:MF_01535 .
_:556914 up:source unirule:MF_01535 .
_:556915 up:source unirule:MF_01535 .
_:556916 up:source unirule:MF_01535 .
_:556917 up:source unirule:MF_01535 .
_:556918 up:source unirule:MF_01535 .
_:556919 up:source unirule:MF_01535 .
_:556920 up:source unirule:MF_01535 .
_:556921 up:source unirule:MF_01535 .
_:556922 up:source unirule:MF_01535 .
_:556923 up:source unirule:MF_01535 .
_:556924 up:source unirule:MF_01535 .
_:556925 up:source unirule:MF_01535 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0008993 ,
GO:0019301 ,
keyword:418 ,
keyword:460 ,
keyword:547 ,
keyword:67 ,
keyword:684 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.5' ;
up:fullName 'Rhamnulokinase' ;
up:shortName 'RhaB' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Rhamnulose kinase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'L-rhamnulose 1-kinase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'ATP:L-rhamnulose phosphotransferase' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'rhaB' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1-hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; L-rhamnose degradation; glycerone phosphate from L-rhamnose: step 2/3.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the rhamnulokinase family.' .
?case12 up:classifiedWith keyword:1015 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:30616 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf ?molecule43 .
?molecule43 rdfs:label 'substrate' .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf ?molecule57 .
?molecule57 rdfs:label 'substrate' .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:30616 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf ?molecule72 .
?molecule72 rdfs:label 'substrate' .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:30616 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:30616 .
_:556926 a rdf:Statement ;
up:attribution _:556896 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:556927 a rdf:Statement ;
up:attribution _:556897 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:556928 a rdf:Statement ;
up:attribution _:556898 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:556929 a rdf:Statement ;
up:attribution _:556899 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:556930 a rdf:Statement ;
up:attribution _:556900 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:556931 a rdf:Statement ;
up:attribution _:556901 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:556932 a rdf:Statement ;
up:attribution _:556902 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:556933 a rdf:Statement ;
up:attribution _:556903 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:556934 a rdf:Statement ;
up:attribution _:556904 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:556935 a rdf:Statement ;
up:attribution _:556905 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:556936 a rdf:Statement ;
up:attribution _:556906 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:556937 a rdf:Statement ;
up:attribution _:556907 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:556938 a rdf:Statement ;
up:attribution _:556908 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:556939 a rdf:Statement ;
up:attribution _:556909 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:556940 a rdf:Statement ;
up:attribution _:556910 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:684 .
_:556941 a rdf:Statement ;
up:attribution _:556911 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:556942 a rdf:Statement ;
up:attribution _:556912 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008993 .
_:556943 a rdf:Statement ;
up:attribution _:556913 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019301 .
_:556944 a rdf:Statement ;
up:attribution _:556914 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:556945 a rdf:Statement ;
up:source unirule:MF_01535 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:556946 a rdf:Statement ;
up:attribution _:556915 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:556947 a rdf:Statement ;
up:source unirule:MF_01535 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:556948 a rdf:Statement ;
up:attribution _:556916 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:556949 a rdf:Statement ;
up:source unirule:MF_01535 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:556950 a rdf:Statement ;
up:attribution _:556917 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:556951 a rdf:Statement ;
up:source unirule:MF_01535 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:556952 a rdf:Statement ;
up:attribution _:556918 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:556953 a rdf:Statement ;
up:source unirule:MF_01535 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:556954 a rdf:Statement ;
up:attribution _:556919 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:556955 a rdf:Statement ;
up:source unirule:MF_01535 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:556956 a rdf:Statement ;
up:attribution _:556920 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:556957 a rdf:Statement ;
up:source unirule:MF_01535 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:556958 a rdf:Statement ;
up:attribution _:556921 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:556959 a rdf:Statement ;
up:source unirule:MF_01535 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:556960 a rdf:Statement ;
up:attribution _:556922 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:556961 a rdf:Statement ;
up:source unirule:MF_01535 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:556962 a rdf:Statement ;
up:attribution _:556923 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:556963 a rdf:Statement ;
up:source unirule:MF_01535 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:556964 a rdf:Statement ;
up:attribution _:556924 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:556965 a rdf:Statement ;
up:source unirule:MF_01535 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:556966 a rdf:Statement ;
up:attribution _:556925 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01535
#Rule MF_01535 Created by:? on:2005-03-31 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01535 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01535a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionP3217194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3217196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32171MF_0153589 .
?templateMotifSequenceMatchRegionP3217194 faldo:begin ?templateMotifSequenceMatchBeginP3217195 .
?templateMotifSequenceMatchBeginP3217195 faldo:position ?templateMotifSequenceMatchBeginPositionP3217190 ;
faldo:reference isoform:P32171-1 .
?templateMotifSequenceProfileAlignmentOperationP3217196 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32171MF_0153591 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0153599 .
?targetMotifMatchRegionMatchBeginMF_0153599 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0153592 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01535100 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_0153589, 1, (STRLEN(?templateMotifCigarP32171MF_0153589) - STRLEN(REPLACE(?templateMotifCigarP32171MF_0153589, CONCAT('^(?:-*[^-]){', STR(((413 - ?templateMotifSequenceMatchBeginPositionP3217190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_0153591, 1, (STRLEN(?targetMotifMatchCigarP32171MF_0153591) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_0153591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_0153591, 1, (STRLEN(?targetMotifMatchCigarP32171MF_0153591) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_0153591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0153592) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_0153589, 1, (STRLEN(?templateMotifCigarP32171MF_0153589) - STRLEN(REPLACE(?templateMotifCigarP32171MF_0153589, CONCAT('^(?:-*[^-]){', STR(((417 - ?templateMotifSequenceMatchBeginPositionP3217190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_0153591, 1, (STRLEN(?targetMotifMatchCigarP32171MF_0153591) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_0153591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_0153591, 1, (STRLEN(?targetMotifMatchCigarP32171MF_0153591) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_0153591, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0153592) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionP32171111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32171MF_01535106 .
?templateMotifSequenceMatchRegionP32171111 faldo:begin ?templateMotifSequenceMatchBeginP32171112 .
?templateMotifSequenceMatchBeginP32171112 faldo:position ?templateMotifSequenceMatchBeginPositionP32171107 ;
faldo:reference isoform:P32171-1 .
?templateMotifSequenceProfileAlignmentOperationP32171113 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32171MF_01535108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535116 .
?targetMotifMatchRegionMatchBeginMF_01535116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01535117 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_10) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535106, 1, (STRLEN(?templateMotifCigarP32171MF_01535106) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535106, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionP32171107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535108, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535108) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535108, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535108) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_01535109) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535106, 1, (STRLEN(?templateMotifCigarP32171MF_01535106) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535106, CONCAT('^(?:-*[^-]){', STR(((370 - ?templateMotifSequenceMatchBeginPositionP32171107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535108, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535108) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535108, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535108) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_01535109) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs2t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP32171128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32171MF_01535123 .
?templateMotifSequenceMatchRegionP32171128 faldo:begin ?templateMotifSequenceMatchBeginP32171129 .
?templateMotifSequenceMatchBeginP32171129 faldo:position ?templateMotifSequenceMatchBeginPositionP32171124 ;
faldo:reference isoform:P32171-1 .
?templateMotifSequenceProfileAlignmentOperationP32171130 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32171MF_01535125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535133 .
?targetMotifMatchRegionMatchBeginMF_01535133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01535134 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_9) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535123, 1, (STRLEN(?templateMotifCigarP32171MF_01535123) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535123, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP32171124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535125, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535125) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535125, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535125) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_01535126) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535123, 1, (STRLEN(?templateMotifCigarP32171MF_01535123) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535123, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionP32171124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535125, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535125) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535125, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535125) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_01535126) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs3t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP32171145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32171MF_01535140 .
?templateMotifSequenceMatchRegionP32171145 faldo:begin ?templateMotifSequenceMatchBeginP32171146 .
?templateMotifSequenceMatchBeginP32171146 faldo:position ?templateMotifSequenceMatchBeginPositionP32171141 ;
faldo:reference isoform:P32171-1 .
?templateMotifSequenceProfileAlignmentOperationP32171147 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32171MF_01535142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535150 .
?targetMotifMatchRegionMatchBeginMF_01535150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01535151 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535140, 1, (STRLEN(?templateMotifCigarP32171MF_01535140) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535140, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP32171141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535142, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535142) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535142, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535142) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_01535143) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535140, 1, (STRLEN(?templateMotifCigarP32171MF_01535140) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535140, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP32171141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535142, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535142) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535142, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535142) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_01535143) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs4t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER (REGEX('A[ST][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP32171162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32171MF_01535157 .
?templateMotifSequenceMatchRegionP32171162 faldo:begin ?templateMotifSequenceMatchBeginP32171163 .
?templateMotifSequenceMatchBeginP32171163 faldo:position ?templateMotifSequenceMatchBeginPositionP32171158 ;
faldo:reference isoform:P32171-1 .
?templateMotifSequenceProfileAlignmentOperationP32171164 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32171MF_01535159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535167 .
?targetMotifMatchRegionMatchBeginMF_01535167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01535168 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535157, 1, (STRLEN(?templateMotifCigarP32171MF_01535157) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535157, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionP32171158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535159, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535159) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535159, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535159) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_01535160) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535157, 1, (STRLEN(?templateMotifCigarP32171MF_01535157) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535157, CONCAT('^(?:-*[^-]){', STR(((238 - ?templateMotifSequenceMatchBeginPositionP32171158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535159, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535159) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535159, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535159) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01535160) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs4t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)) = 'HDT')) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP32171179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32171MF_01535174 .
?templateMotifSequenceMatchRegionP32171179 faldo:begin ?templateMotifSequenceMatchBeginP32171180 .
?templateMotifSequenceMatchBeginP32171180 faldo:position ?templateMotifSequenceMatchBeginPositionP32171175 ;
faldo:reference isoform:P32171-1 .
?templateMotifSequenceProfileAlignmentOperationP32171181 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32171MF_01535176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535184 .
?targetMotifMatchRegionMatchBeginMF_01535184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01535185 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535174, 1, (STRLEN(?templateMotifCigarP32171MF_01535174) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535174, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionP32171175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535176, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535176) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535176, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535176) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01535177) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs4t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionP32171194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32171MF_01535189 .
?templateMotifSequenceMatchRegionP32171194 faldo:begin ?templateMotifSequenceMatchBeginP32171195 .
?templateMotifSequenceMatchBeginP32171195 faldo:position ?templateMotifSequenceMatchBeginPositionP32171190 ;
faldo:reference isoform:P32171-1 .
?templateMotifSequenceProfileAlignmentOperationP32171196 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535200 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32171MF_01535191 .
?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535199 .
?targetMotifMatchRegionMatchBeginMF_01535199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01535200 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535189, 1, (STRLEN(?templateMotifCigarP32171MF_01535189) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535189, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP32171190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535191, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535191) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535191, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535191) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_01535192) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs4t203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse55) .
FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionP32171209 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171211 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32171MF_01535204 .
?templateMotifSequenceMatchRegionP32171209 faldo:begin ?templateMotifSequenceMatchBeginP32171210 .
?templateMotifSequenceMatchBeginP32171210 faldo:position ?templateMotifSequenceMatchBeginPositionP32171205 ;
faldo:reference isoform:P32171-1 .
?templateMotifSequenceProfileAlignmentOperationP32171211 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535215 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32171MF_01535206 .
?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535214 .
?targetMotifMatchRegionMatchBeginMF_01535214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535207 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01535215 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535204, 1, (STRLEN(?templateMotifCigarP32171MF_01535204) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535204, CONCAT('^(?:-*[^-]){', STR(((259 - ?templateMotifSequenceMatchBeginPositionP32171205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535206, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535206) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535206, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535206) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_01535207) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs4t218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionP32171224 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171226 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32171MF_01535219 .
?templateMotifSequenceMatchRegionP32171224 faldo:begin ?templateMotifSequenceMatchBeginP32171225 .
?templateMotifSequenceMatchBeginP32171225 faldo:position ?templateMotifSequenceMatchBeginPositionP32171220 ;
faldo:reference isoform:P32171-1 .
?templateMotifSequenceProfileAlignmentOperationP32171226 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535230 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32171MF_01535221 .
?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535229 .
?targetMotifMatchRegionMatchBeginMF_01535229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535222 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01535230 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535219, 1, (STRLEN(?templateMotifCigarP32171MF_01535219) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535219, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionP32171220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535221, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535221) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535221, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535221) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_01535222) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs4t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionP32171239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32171MF_01535234 .
?templateMotifSequenceMatchRegionP32171239 faldo:begin ?templateMotifSequenceMatchBeginP32171240 .
?templateMotifSequenceMatchBeginP32171240 faldo:position ?templateMotifSequenceMatchBeginPositionP32171235 ;
faldo:reference isoform:P32171-1 .
?templateMotifSequenceProfileAlignmentOperationP32171241 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32171MF_01535236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535244 .
?targetMotifMatchRegionMatchBeginMF_01535244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01535245 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535234, 1, (STRLEN(?templateMotifCigarP32171MF_01535234) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535234, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionP32171235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535236, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535236) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535236, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535236) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_01535237) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs4t248) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER (REGEX('[QNE]', SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionP32171254 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32171256 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32171MF_01535249 .
?templateMotifSequenceMatchRegionP32171254 faldo:begin ?templateMotifSequenceMatchBeginP32171255 .
?templateMotifSequenceMatchBeginP32171255 faldo:position ?templateMotifSequenceMatchBeginPositionP32171250 ;
faldo:reference isoform:P32171-1 .
?templateMotifSequenceProfileAlignmentOperationP32171256 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01535260 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32171MF_01535251 .
?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01535259 .
?targetMotifMatchRegionMatchBeginMF_01535259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01535252 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01535260 edam:has_input signature:MF_01535 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32171MF_01535249, 1, (STRLEN(?templateMotifCigarP32171MF_01535249) - STRLEN(REPLACE(?templateMotifCigarP32171MF_01535249, CONCAT('^(?:-*[^-]){', STR(((402 - ?templateMotifSequenceMatchBeginPositionP32171250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32171MF_01535251, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535251) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32171MF_01535251, 1, (STRLEN(?targetMotifMatchCigarP32171MF_01535251) - STRLEN(REPLACE(?targetMotifMatchCigarP32171MF_01535251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) .
BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_01535252) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs4t263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01535a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:561 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag264) .
}
BIND(IF((BOUND(?tagFT_9) || BOUND(?tagFT_10) || BOUND(?tagFT_11)), ?caseWithTag264, ?UNBOUND_VARIABLE) AS ?case12) .
}
"xsd:string |
