| http://purl.uniprot.org/unirules/MF_01554#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:563092 up:source unirule:MF_01554 .
_:563093 up:source unirule:MF_01554 .
_:563094 up:source unirule:MF_01554 .
_:563095 up:source unirule:MF_01554 .
_:563096 up:source unirule:MF_01554 .
_:563097 up:source unirule:MF_01554 .
_:563098 up:source unirule:MF_01554 .
_:563099 up:source unirule:MF_01554 .
_:563100 up:source unirule:MF_01554 .
_:563101 up:source unirule:MF_01554 .
_:563102 up:source unirule:MF_01554 .
_:563103 up:source unirule:MF_01554 .
_:563104 up:source unirule:MF_01554 .
_:563105 up:source unirule:MF_01554 .
_:563106 up:source unirule:MF_01554 .
_:563107 up:source unirule:MF_01554 .
_:563108 up:source unirule:MF_01554 .
_:563109 up:source unirule:MF_01554 .
_:563110 up:source unirule:MF_01554 .
_:563111 up:source unirule:MF_01554 .
_:563112 up:source unirule:MF_01554 .
_:563113 up:source unirule:MF_01554 .
_:563114 up:source unirule:MF_01554 .
_:563115 up:source unirule:MF_01554 .
_:563116 up:source unirule:MF_01554 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0008966 ,
keyword:413 ,
keyword:597 .
?gene0 skos:prefLabel 'glmM' .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:PTM_Annotation ;
rdfs:comment 'Activated by phosphorylation.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the phosphohexose mutase family.' .
?case6 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?case7 up:recommendedName ?name8 .
?name8 up:ecName '5.4.2.10' ;
up:fullName 'Phosphoglucosamine mutase' ;
rdf:type up:Structured_Name .
?case9 up:recommendedName ?name10 .
?name10 up:ecName '5.4.2.10' ;
up:fullName 'Probable phosphoglucosamine mutase' ;
rdf:type up:Structured_Name .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 ,
?annotation30 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'via phosphate group' .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:18420 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:18420 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:18420 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:18420 .
?pfs36 up:annotation ?annotation37 ,
?annotation43 ,
?annotation49 ,
?annotation55 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'via phosphate group' .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:18420 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:18420 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:18420 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:18420 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Phosphoserine intermediate' .
?pfsb63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb69 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Phosphoserine intermediate' .
?pfsb75 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb81 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
_:563117 a rdf:Statement ;
up:attribution _:563092 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:563118 a rdf:Statement ;
up:attribution _:563093 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:563119 a rdf:Statement ;
up:attribution _:563094 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:563120 a rdf:Statement ;
up:attribution _:563095 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:563121 a rdf:Statement ;
up:attribution _:563096 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:563122 a rdf:Statement ;
up:attribution _:563097 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:563123 a rdf:Statement ;
up:attribution _:563098 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:563124 a rdf:Statement ;
up:attribution _:563099 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008966 .
_:563125 a rdf:Statement ;
up:attribution _:563100 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:563126 a rdf:Statement ;
up:attribution _:563101 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:563127 a rdf:Statement ;
up:attribution _:563102 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:563128 a rdf:Statement ;
up:attribution _:563103 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:563129 a rdf:Statement ;
up:attribution _:563104 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:563130 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:563131 a rdf:Statement ;
up:attribution _:563105 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:563132 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:563133 a rdf:Statement ;
up:attribution _:563106 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:563134 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:563135 a rdf:Statement ;
up:attribution _:563107 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:563136 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:563137 a rdf:Statement ;
up:attribution _:563108 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:563138 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:563139 a rdf:Statement ;
up:attribution _:563109 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:563140 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:563141 a rdf:Statement ;
up:attribution _:563110 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:563142 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:563143 a rdf:Statement ;
up:attribution _:563111 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:563144 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:563145 a rdf:Statement ;
up:attribution _:563112 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:563146 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:563147 a rdf:Statement ;
up:attribution _:563113 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:563148 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:563149 a rdf:Statement ;
up:attribution _:563114 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:563150 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:563151 a rdf:Statement ;
up:attribution _:563115 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:563152 a rdf:Statement ;
up:source unirule:MF_01554 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:563153 a rdf:Statement ;
up:attribution _:563116 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01554
#Rule MF_01554 Created by:? on:2005-12-06 Modified by:Edouard de Castro on:2023-06-01
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01554_B .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01554_A .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_01554a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01554a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01554a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01554a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionQ6LYB490 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6LYB492 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6LYB4MF_01554_A85 .
?templateMotifSequenceMatchRegionQ6LYB490 faldo:begin ?templateMotifSequenceMatchBeginQ6LYB491 .
?templateMotifSequenceMatchBeginQ6LYB491 faldo:position ?templateMotifSequenceMatchBeginPositionQ6LYB486 ;
faldo:reference isoform:Q6LYB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ6LYB492 edam:has_input signature:MF_01554_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01554_A96 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6LYB4MF_01554_A87 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01554_A95 .
?targetMotifMatchRegionMatchBeginMF_01554_A95 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01554_A88 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01554_A96 edam:has_input signature:MF_01554_A ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6LYB4MF_01554_A85, 1, (STRLEN(?templateMotifCigarQ6LYB4MF_01554_A85) - STRLEN(REPLACE(?templateMotifCigarQ6LYB4MF_01554_A85, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionQ6LYB486) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A87, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A87) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A87, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A87, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A87) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A87, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_A88) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'S')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6LYB4MF_01554_A85, 1, (STRLEN(?templateMotifCigarQ6LYB4MF_01554_A85) - STRLEN(REPLACE(?templateMotifCigarQ6LYB4MF_01554_A85, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionQ6LYB486) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A87, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A87) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A87, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A87, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A87) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A87, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_A88) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6LYB4MF_01554_A85, 1, (STRLEN(?templateMotifCigarQ6LYB4MF_01554_A85) - STRLEN(REPLACE(?templateMotifCigarQ6LYB4MF_01554_A85, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionQ6LYB486) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A87, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A87) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A87, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A87, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A87) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A87, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_A88) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6LYB4MF_01554_A85, 1, (STRLEN(?templateMotifCigarQ6LYB4MF_01554_A85) - STRLEN(REPLACE(?templateMotifCigarQ6LYB4MF_01554_A85, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionQ6LYB486) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A87, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A87) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A87, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A87, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A87) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A87, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_A88) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'D')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP31120114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31120116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31120MF_01554_B109 .
?templateMotifSequenceMatchRegionP31120114 faldo:begin ?templateMotifSequenceMatchBeginP31120115 .
?templateMotifSequenceMatchBeginP31120115 faldo:position ?templateMotifSequenceMatchBeginPositionP31120110 ;
faldo:reference isoform:P31120-1 .
?templateMotifSequenceProfileAlignmentOperationP31120116 edam:has_input signature:MF_01554_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01554_B120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31120MF_01554_B111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01554_B119 .
?targetMotifMatchRegionMatchBeginMF_01554_B119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01554_B112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01554_B120 edam:has_input signature:MF_01554_B ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31120MF_01554_B109, 1, (STRLEN(?templateMotifCigarP31120MF_01554_B109) - STRLEN(REPLACE(?templateMotifCigarP31120MF_01554_B109, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP31120110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B111, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B111) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B111, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B111) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_B112) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'S')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31120MF_01554_B109, 1, (STRLEN(?templateMotifCigarP31120MF_01554_B109) - STRLEN(REPLACE(?templateMotifCigarP31120MF_01554_B109, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionP31120110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B111, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B111) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B111, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B111) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_B112) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31120MF_01554_B109, 1, (STRLEN(?templateMotifCigarP31120MF_01554_B109) - STRLEN(REPLACE(?templateMotifCigarP31120MF_01554_B109, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP31120110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B111, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B111) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B111, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B111) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_B112) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs2t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31120MF_01554_B109, 1, (STRLEN(?templateMotifCigarP31120MF_01554_B109) - STRLEN(REPLACE(?templateMotifCigarP31120MF_01554_B109, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionP31120110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B111, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B111) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B111, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B111) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_B112) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs2t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'D')) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionQ6LYB4138 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6LYB4140 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6LYB4MF_01554_A133 .
?templateMotifSequenceMatchRegionQ6LYB4138 faldo:begin ?templateMotifSequenceMatchBeginQ6LYB4139 .
?templateMotifSequenceMatchBeginQ6LYB4139 faldo:position ?templateMotifSequenceMatchBeginPositionQ6LYB4134 ;
faldo:reference isoform:Q6LYB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ6LYB4140 edam:has_input signature:MF_01554_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01554_A144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6LYB4MF_01554_A135 .
?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01554_A143 .
?targetMotifMatchRegionMatchBeginMF_01554_A143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01554_A136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01554_A144 edam:has_input signature:MF_01554_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6LYB4MF_01554_A133, 1, (STRLEN(?templateMotifCigarQ6LYB4MF_01554_A133) - STRLEN(REPLACE(?templateMotifCigarQ6LYB4MF_01554_A133, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionQ6LYB4134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A135, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A135) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A135, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A135) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_A136) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs3t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01554a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionQ6LYB4153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ6LYB4155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ6LYB4MF_01554_A148 .
?templateMotifSequenceMatchRegionQ6LYB4153 faldo:begin ?templateMotifSequenceMatchBeginQ6LYB4154 .
?templateMotifSequenceMatchBeginQ6LYB4154 faldo:position ?templateMotifSequenceMatchBeginPositionQ6LYB4149 ;
faldo:reference isoform:Q6LYB4-1 .
?templateMotifSequenceProfileAlignmentOperationQ6LYB4155 edam:has_input signature:MF_01554_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01554_A159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ6LYB4MF_01554_A150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01554_A158 .
?targetMotifMatchRegionMatchBeginMF_01554_A158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01554_A151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01554_A159 edam:has_input signature:MF_01554_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ6LYB4MF_01554_A148, 1, (STRLEN(?templateMotifCigarQ6LYB4MF_01554_A148) - STRLEN(REPLACE(?templateMotifCigarQ6LYB4MF_01554_A148, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionQ6LYB4149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A150, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A150) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ6LYB4MF_01554_A150, 1, (STRLEN(?targetMotifMatchCigarQ6LYB4MF_01554_A150) - STRLEN(REPLACE(?targetMotifMatchCigarQ6LYB4MF_01554_A150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_A151) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs3t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01554a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP31120168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31120170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31120MF_01554_B163 .
?templateMotifSequenceMatchRegionP31120168 faldo:begin ?templateMotifSequenceMatchBeginP31120169 .
?templateMotifSequenceMatchBeginP31120169 faldo:position ?templateMotifSequenceMatchBeginPositionP31120164 ;
faldo:reference isoform:P31120-1 .
?templateMotifSequenceProfileAlignmentOperationP31120170 edam:has_input signature:MF_01554_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01554_B174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31120MF_01554_B165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01554_B173 .
?targetMotifMatchRegionMatchBeginMF_01554_B173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01554_B166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01554_B174 edam:has_input signature:MF_01554_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31120MF_01554_B163, 1, (STRLEN(?templateMotifCigarP31120MF_01554_B163) - STRLEN(REPLACE(?templateMotifCigarP31120MF_01554_B163, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP31120164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B165, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B165) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B165, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B165) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_B166) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs4t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01554a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP31120183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31120185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31120MF_01554_B178 .
?templateMotifSequenceMatchRegionP31120183 faldo:begin ?templateMotifSequenceMatchBeginP31120184 .
?templateMotifSequenceMatchBeginP31120184 faldo:position ?templateMotifSequenceMatchBeginPositionP31120179 ;
faldo:reference isoform:P31120-1 .
?templateMotifSequenceProfileAlignmentOperationP31120185 edam:has_input signature:MF_01554_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01554_B189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31120MF_01554_B180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01554_B188 .
?targetMotifMatchRegionMatchBeginMF_01554_B188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01554_B181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01554_B189 edam:has_input signature:MF_01554_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31120MF_01554_B178, 1, (STRLEN(?templateMotifCigarP31120MF_01554_B178) - STRLEN(REPLACE(?templateMotifCigarP31120MF_01554_B178, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP31120179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B180, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B180) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31120MF_01554_B180, 1, (STRLEN(?targetMotifMatchCigarP31120MF_01554_B180) - STRLEN(REPLACE(?targetMotifMatchCigarP31120MF_01554_B180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_01554_B181) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs4t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01554a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag193) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag193, ?UNBOUND_VARIABLE) AS ?case6) .
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon194 {taxon:2 taxon:183939}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon194 .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_01554a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon195 {taxon:2 taxon:183939}
?thisOrganism rdfs:subClassOf+ ?supertaxon195 .
})) .
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_01554a10')) AS ?name10) .
}
}
"xsd:string |
