| http://purl.uniprot.org/unirules/MF_01679#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:613017 up:source unirule:MF_01679 .
_:613018 up:source unirule:MF_01679 .
_:613019 up:source unirule:MF_01679 .
_:613020 up:source unirule:MF_01679 .
_:613021 up:source unirule:MF_01679 .
_:613022 up:source unirule:MF_01679 .
_:613023 up:source unirule:MF_01679 .
_:613024 up:source unirule:MF_01679 .
_:613025 up:source unirule:MF_01679 .
_:613026 up:source unirule:MF_01679 .
_:613027 up:source unirule:MF_01679 .
_:613028 up:source unirule:MF_01679 .
_:613029 up:source unirule:MF_01679 .
_:613030 up:source unirule:MF_01679 .
_:613031 up:source unirule:MF_01679 .
_:613032 up:source unirule:MF_01679 .
_:613033 up:source unirule:MF_01679 .
_:613034 up:source unirule:MF_01679 .
_:613035 up:source unirule:MF_01679 .
_:613036 up:source unirule:MF_01679 .
_:613037 up:source unirule:MF_01679 .
_:613038 up:source unirule:MF_01679 .
_:613039 up:source unirule:MF_01679 .
_:613040 up:source unirule:MF_01679 .
_:613041 up:source unirule:MF_01679 .
_:613042 up:source unirule:MF_01679 .
_:613043 up:source unirule:MF_01679 .
_:613044 up:source unirule:MF_01679 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0000287 ,
GO:0019509 ,
GO:0043715 ,
keyword:28 ,
keyword:413 ,
keyword:460 ,
keyword:479 ,
keyword:486 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.3.2.5' ;
up:fullName '2,3-diketo-5-methylthiopentyl-1-phosphate enolase' ;
up:shortName 'DK-MTP-1-P enolase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'RuBisCO-like protein' ;
up:shortName 'RLP' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mtnW' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 3/6.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation9 a up:Annotation ;
rdfs:comment 'Has no RuBP-carboxylation activity.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RuBisCO large chain family. Type IV subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf ?molecule16 .
?molecule16 rdfs:label 'substrate' .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf ?molecule24 .
?molecule24 rdfs:label 'substrate' .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'via carbamate group' .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:18420 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:18420 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:18420 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf ?molecule59 .
?molecule59 rdfs:label 'substrate' .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf ?molecule67 .
?molecule67 rdfs:label 'substrate' .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf ?molecule75 .
?molecule75 rdfs:label 'substrate' .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-carboxylysine' .
?pfsb80 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
_:613045 a rdf:Statement ;
up:attribution _:613017 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:613046 a rdf:Statement ;
up:attribution _:613018 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:613047 a rdf:Statement ;
up:attribution _:613019 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:613048 a rdf:Statement ;
up:attribution _:613020 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:613049 a rdf:Statement ;
up:attribution _:613021 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:613050 a rdf:Statement ;
up:attribution _:613022 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:613051 a rdf:Statement ;
up:attribution _:613023 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:613052 a rdf:Statement ;
up:attribution _:613024 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:613053 a rdf:Statement ;
up:attribution _:613025 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:613054 a rdf:Statement ;
up:attribution _:613026 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:613055 a rdf:Statement ;
up:attribution _:613027 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:613056 a rdf:Statement ;
up:attribution _:613028 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:613057 a rdf:Statement ;
up:attribution _:613029 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:613058 a rdf:Statement ;
up:attribution _:613030 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:613059 a rdf:Statement ;
up:attribution _:613031 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:486 .
_:613060 a rdf:Statement ;
up:attribution _:613032 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:613061 a rdf:Statement ;
up:attribution _:613033 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043715 .
_:613062 a rdf:Statement ;
up:attribution _:613034 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019509 .
_:613063 a rdf:Statement ;
up:source unirule:MF_01679 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:613064 a rdf:Statement ;
up:attribution _:613035 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:613065 a rdf:Statement ;
up:source unirule:MF_01679 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:613066 a rdf:Statement ;
up:attribution _:613036 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:613067 a rdf:Statement ;
up:source unirule:MF_01679 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:613068 a rdf:Statement ;
up:attribution _:613037 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:613069 a rdf:Statement ;
up:source unirule:MF_01679 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:613070 a rdf:Statement ;
up:attribution _:613038 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:613071 a rdf:Statement ;
up:source unirule:MF_01679 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:613072 a rdf:Statement ;
up:attribution _:613039 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:613073 a rdf:Statement ;
up:source unirule:MF_01679 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:613074 a rdf:Statement ;
up:attribution _:613040 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:613075 a rdf:Statement ;
up:source unirule:MF_01679 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:613076 a rdf:Statement ;
up:attribution _:613041 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:613077 a rdf:Statement ;
up:source unirule:MF_01679 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:613078 a rdf:Statement ;
up:attribution _:613042 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:613079 a rdf:Statement ;
up:source unirule:MF_01679 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:613080 a rdf:Statement ;
up:attribution _:613043 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:613081 a rdf:Statement ;
up:source unirule:MF_01679 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:613082 a rdf:Statement ;
up:attribution _:613044 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01679
#Rule MF_01679 Created by:? on:2008-10-22 Modified by:Catherine Rivoire on:2024-04-30
VALUES ?supertaxon84 {taxon:3252632 taxon:1239}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01679 .
?thisOrganism rdfs:subClassOf+ ?supertaxon84 .
BIND(URI(CONCAT(STR(?this), '#MF_01679a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionQ5L1E290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5L1E2MF_0167985 .
?templateMotifSequenceMatchRegionQ5L1E290 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E291 .
?templateMotifSequenceMatchBeginQ5L1E291 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E286 ;
faldo:reference isoform:Q5L1E2-1 .
?templateMotifSequenceProfileAlignmentOperationQ5L1E292 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0167996 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5L1E2MF_0167987 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0167995 .
?targetMotifMatchRegionMatchBeginMF_0167995 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0167988 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0167996 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_0167985, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_0167985) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_0167985, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ5L1E286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_0167987, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_0167987) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_0167987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_0167987, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_0167987) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_0167987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0167988) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_0167985, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_0167985) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_0167985, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ5L1E286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_0167987, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_0167987) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_0167987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_0167987, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_0167987) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_0167987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0167988) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse14) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5L1E2MF_01679102 .
?templateMotifSequenceMatchRegionQ5L1E2107 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2108 .
?templateMotifSequenceMatchBeginQ5L1E2108 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2103 ;
faldo:reference isoform:Q5L1E2-1 .
?templateMotifSequenceProfileAlignmentOperationQ5L1E2109 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679112 .
?targetMotifMatchRegionMatchBeginMF_01679112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01679113 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679102, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679102) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679102, CONCAT('^(?:-*[^-]){', STR(((359 - ?templateMotifSequenceMatchBeginPositionQ5L1E2103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679104, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679104) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679104, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679104) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01679105) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679102, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679102) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679102, CONCAT('^(?:-*[^-]){', STR(((360 - ?templateMotifSequenceMatchBeginPositionQ5L1E2103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679104, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679104) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679104, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679104) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01679105) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5L1E2MF_01679119 .
?templateMotifSequenceMatchRegionQ5L1E2124 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2125 .
?templateMotifSequenceMatchBeginQ5L1E2125 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2120 ;
faldo:reference isoform:Q5L1E2-1 .
?templateMotifSequenceProfileAlignmentOperationQ5L1E2126 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679129 .
?targetMotifMatchRegionMatchBeginMF_01679129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01679130 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679119, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679119) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679119, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionQ5L1E2120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679121, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679121) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679121, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679121) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01679122) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5L1E2MF_01679134 .
?templateMotifSequenceMatchRegionQ5L1E2139 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2140 .
?templateMotifSequenceMatchBeginQ5L1E2140 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2135 ;
faldo:reference isoform:Q5L1E2-1 .
?templateMotifSequenceProfileAlignmentOperationQ5L1E2141 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679144 .
?targetMotifMatchRegionMatchBeginMF_01679144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01679145 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679134, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679134) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679134, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ5L1E2135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679136, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679136) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679136, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679136) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01679137) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5L1E2MF_01679149 .
?templateMotifSequenceMatchRegionQ5L1E2154 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2155 .
?templateMotifSequenceMatchBeginQ5L1E2155 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2150 ;
faldo:reference isoform:Q5L1E2-1 .
?templateMotifSequenceProfileAlignmentOperationQ5L1E2156 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679159 .
?targetMotifMatchRegionMatchBeginMF_01679159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01679160 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679149, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679149) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679149, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ5L1E2150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679151, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679151) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679151, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679151) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01679152) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5L1E2MF_01679164 .
?templateMotifSequenceMatchRegionQ5L1E2169 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2170 .
?templateMotifSequenceMatchBeginQ5L1E2170 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2165 ;
faldo:reference isoform:Q5L1E2-1 .
?templateMotifSequenceProfileAlignmentOperationQ5L1E2171 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679174 .
?targetMotifMatchRegionMatchBeginMF_01679174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01679175 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679164, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679164) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679164, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ5L1E2165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679166, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679166) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679166, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679166) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01679167) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5L1E2MF_01679179 .
?templateMotifSequenceMatchRegionQ5L1E2184 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2185 .
?templateMotifSequenceMatchBeginQ5L1E2185 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2180 ;
faldo:reference isoform:Q5L1E2-1 .
?templateMotifSequenceProfileAlignmentOperationQ5L1E2186 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679189 .
?targetMotifMatchRegionMatchBeginMF_01679189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01679190 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679179, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679179) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679179, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionQ5L1E2180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679181, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679181) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679181, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679181) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_01679182) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t193) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch198 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2201 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5L1E2MF_01679194 .
?templateMotifSequenceMatchRegionQ5L1E2199 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2200 .
?templateMotifSequenceMatchBeginQ5L1E2200 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2195 ;
faldo:reference isoform:Q5L1E2-1 .
?templateMotifSequenceProfileAlignmentOperationQ5L1E2201 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
?targetMotifMatch202 faldo:location ?targetMotifMatchRegionMatch203 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679205 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679196 .
?targetMotifMatchRegionMatch203 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679204 .
?targetMotifMatchRegionMatchBeginMF_01679204 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01679205 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679194, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679194) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679194, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionQ5L1E2195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679196, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679196) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679196, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679196) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_01679197) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch213 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2214 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2216 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5L1E2MF_01679209 .
?templateMotifSequenceMatchRegionQ5L1E2214 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2215 .
?templateMotifSequenceMatchBeginQ5L1E2215 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2210 ;
faldo:reference isoform:Q5L1E2-1 .
?templateMotifSequenceProfileAlignmentOperationQ5L1E2216 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
?targetMotifMatch217 faldo:location ?targetMotifMatchRegionMatch218 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679220 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679211 .
?targetMotifMatchRegionMatch218 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679219 .
?targetMotifMatchRegionMatchBeginMF_01679219 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679212 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01679220 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679209, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679209) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679209, CONCAT('^(?:-*[^-]){', STR(((337 - ?templateMotifSequenceMatchBeginPositionQ5L1E2210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679211, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679211) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679211, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679211) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) .
BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_01679212) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t223) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch228 faldo:location ?templateMotifSequenceMatchRegionQ5L1E2229 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5L1E2231 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5L1E2MF_01679224 .
?templateMotifSequenceMatchRegionQ5L1E2229 faldo:begin ?templateMotifSequenceMatchBeginQ5L1E2230 .
?templateMotifSequenceMatchBeginQ5L1E2230 faldo:position ?templateMotifSequenceMatchBeginPositionQ5L1E2225 ;
faldo:reference isoform:Q5L1E2-1 .
?templateMotifSequenceProfileAlignmentOperationQ5L1E2231 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
?targetMotifMatch232 faldo:location ?targetMotifMatchRegionMatch233 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01679235 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5L1E2MF_01679226 .
?targetMotifMatchRegionMatch233 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01679234 .
?targetMotifMatchRegionMatchBeginMF_01679234 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01679227 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01679235 edam:has_input signature:MF_01679 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5L1E2MF_01679224, 1, (STRLEN(?templateMotifCigarQ5L1E2MF_01679224) - STRLEN(REPLACE(?templateMotifCigarQ5L1E2MF_01679224, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ5L1E2225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679226, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679226) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5L1E2MF_01679226, 1, (STRLEN(?targetMotifMatchCigarQ5L1E2MF_01679226) - STRLEN(REPLACE(?targetMotifMatchCigarQ5L1E2MF_01679226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_01679227) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01679a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
}
"xsd:string |
