| http://purl.uniprot.org/unirules/MF_01825#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:639616 up:source unirule:MF_01825 .
_:639617 up:source unirule:MF_01825 .
_:639618 up:source unirule:MF_01825 .
_:639619 up:source unirule:MF_01825 .
_:639620 up:source unirule:MF_01825 .
_:639621 up:source unirule:MF_01825 .
_:639622 up:source unirule:MF_01825 .
_:639623 up:source unirule:MF_01825 .
_:639624 up:source unirule:MF_01825 .
_:639625 up:source unirule:MF_01825 .
_:639626 up:source unirule:MF_01825 .
_:639627 up:source unirule:MF_01825 .
_:639628 up:source unirule:MF_01825 .
_:639629 up:source unirule:MF_01825 .
_:639630 up:source unirule:MF_01825 .
_:639631 up:source unirule:MF_01825 .
_:639632 up:source unirule:MF_01825 .
_:639633 up:source unirule:MF_01825 .
_:639634 up:source unirule:MF_01825 .
_:639635 up:source unirule:MF_01825 .
_:639636 up:source unirule:MF_01825 .
_:639637 up:source unirule:MF_01825 .
_:639638 up:source unirule:MF_01825 .
_:639639 up:source unirule:MF_01825 .
_:639640 up:source unirule:MF_01825 .
_:639641 up:source unirule:MF_01825 .
_:639642 up:source unirule:MF_01825 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0008615 ,
GO:0016491 ,
keyword:520 ,
keyword:560 ,
keyword:664 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.290' ;
up:fullName 'Erythronate-4-phosphate dehydrogenase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'pdxB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the oxidation of erythronate-4-phosphate to 3-hydroxy-2-oxo-4-phosphonooxybutanoate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment "Cofactor biosynthesis; pyridoxine 5'-phosphate biosynthesis; pyridoxine 5'-phosphate from D-erythrose 4-phosphate: step 2/5." .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. PdxB subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:57540 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:57540 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf ?molecule47 .
?molecule47 rdfs:label 'substrate' .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf ?molecule55 .
?molecule55 rdfs:label 'substrate' .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:57540 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:57540 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:57540 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:57540 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf ?molecule91 .
?molecule91 rdfs:label 'substrate' .
_:639643 a rdf:Statement ;
up:attribution _:639616 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:639644 a rdf:Statement ;
up:attribution _:639617 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:639645 a rdf:Statement ;
up:attribution _:639618 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:639646 a rdf:Statement ;
up:attribution _:639619 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:639647 a rdf:Statement ;
up:attribution _:639620 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:639648 a rdf:Statement ;
up:attribution _:639621 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:639649 a rdf:Statement ;
up:attribution _:639622 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:639650 a rdf:Statement ;
up:attribution _:639623 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:639651 a rdf:Statement ;
up:attribution _:639624 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:639652 a rdf:Statement ;
up:attribution _:639625 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:639653 a rdf:Statement ;
up:attribution _:639626 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:639654 a rdf:Statement ;
up:attribution _:639627 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:664 .
_:639655 a rdf:Statement ;
up:attribution _:639628 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016491 .
_:639656 a rdf:Statement ;
up:attribution _:639629 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008615 .
_:639657 a rdf:Statement ;
up:attribution _:639630 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:639658 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:639659 a rdf:Statement ;
up:attribution _:639631 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:639660 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:639661 a rdf:Statement ;
up:attribution _:639632 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:639662 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:639663 a rdf:Statement ;
up:attribution _:639633 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:639664 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:639665 a rdf:Statement ;
up:attribution _:639634 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:639666 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:639667 a rdf:Statement ;
up:attribution _:639635 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:639668 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:639669 a rdf:Statement ;
up:attribution _:639636 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:639670 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:639671 a rdf:Statement ;
up:attribution _:639637 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:639672 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:639673 a rdf:Statement ;
up:attribution _:639638 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:639674 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:639675 a rdf:Statement ;
up:attribution _:639639 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:639676 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:639677 a rdf:Statement ;
up:attribution _:639640 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:639678 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:639679 a rdf:Statement ;
up:attribution _:639641 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:639680 a rdf:Statement ;
up:source unirule:MF_01825 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:639681 a rdf:Statement ;
up:attribution _:639642 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01825
#Rule MF_01825 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon94 {taxon:976 taxon:1236}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01825 .
?thisOrganism rdfs:subClassOf+ ?supertaxon94 .
BIND(URI(CONCAT(STR(?this), '#MF_01825a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_0182595 .
?templateMotifSequenceMatchRegionQ9I3W9100 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9101 .
?templateMotifSequenceMatchBeginQ9I3W9101 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W996 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9102 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_0182597 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825105 .
?targetMotifMatchRegionMatchBeginMF_01825105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0182598 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825106 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_0182595, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_0182595) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_0182595, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionQ9I3W996) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_0182597, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_0182597) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_0182597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_0182597, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_0182597) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_0182597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0182598) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_0182595, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_0182595) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_0182595, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ9I3W996) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_0182597, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_0182597) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_0182597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_0182597, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_0182597) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_0182597, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0182598) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)) = 'QV')) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_01825112 .
?templateMotifSequenceMatchRegionQ9I3W9117 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9118 .
?templateMotifSequenceMatchBeginQ9I3W9118 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W9113 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9119 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_01825114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825122 .
?targetMotifMatchRegionMatchBeginMF_01825122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01825115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825123 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825112, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825112) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825112, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionQ9I3W9113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825114, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825114) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825114, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825114) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_01825115) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825112, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825112) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825112, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionQ9I3W9113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825114, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825114) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825114, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825114) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_01825115) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)) = 'ASR')) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_01825129 .
?templateMotifSequenceMatchRegionQ9I3W9134 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9135 .
?templateMotifSequenceMatchBeginQ9I3W9135 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W9130 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9136 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_01825131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825139 .
?targetMotifMatchRegionMatchBeginMF_01825139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01825132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825140 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825129, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825129) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825129, CONCAT('^(?:-*[^-]){', STR(((208 - ?templateMotifSequenceMatchBeginPositionQ9I3W9130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825131, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825131) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825131, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825131) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01825132) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_01825144 .
?templateMotifSequenceMatchRegionQ9I3W9149 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9150 .
?templateMotifSequenceMatchBeginQ9I3W9150 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W9145 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9151 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_01825146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825154 .
?targetMotifMatchRegionMatchBeginMF_01825154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01825147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825155 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825144, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825144) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825144, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionQ9I3W9145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825146, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825146) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825146, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825146) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_01825147) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_01825159 .
?templateMotifSequenceMatchRegionQ9I3W9164 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9165 .
?templateMotifSequenceMatchBeginQ9I3W9165 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W9160 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9166 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_01825161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825169 .
?targetMotifMatchRegionMatchBeginMF_01825169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01825162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825170 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825159, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825159) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825159, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionQ9I3W9160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825161, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825161) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825161, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825161) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01825162) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_01825174 .
?templateMotifSequenceMatchRegionQ9I3W9179 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9180 .
?templateMotifSequenceMatchBeginQ9I3W9180 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W9175 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9181 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_01825176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825184 .
?targetMotifMatchRegionMatchBeginMF_01825184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01825177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825185 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825174, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825174) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825174, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionQ9I3W9175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825176, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825176) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825176, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825176) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01825177) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse45) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_01825189 .
?templateMotifSequenceMatchRegionQ9I3W9194 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9195 .
?templateMotifSequenceMatchBeginQ9I3W9195 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W9190 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9196 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825200 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_01825191 .
?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825199 .
?targetMotifMatchRegionMatchBeginMF_01825199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01825192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825200 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825189, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825189) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825189, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionQ9I3W9190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825191, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825191) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825191, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825191) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_01825192) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9209 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9211 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_01825204 .
?templateMotifSequenceMatchRegionQ9I3W9209 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9210 .
?templateMotifSequenceMatchBeginQ9I3W9210 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W9205 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9211 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825215 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_01825206 .
?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825214 .
?targetMotifMatchRegionMatchBeginMF_01825214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01825207 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825215 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825204, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825204) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825204, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionQ9I3W9205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825206, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825206) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825206, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825206) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_01825207) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9224 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9226 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_01825219 .
?templateMotifSequenceMatchRegionQ9I3W9224 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9225 .
?templateMotifSequenceMatchBeginQ9I3W9225 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W9220 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9226 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825230 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_01825221 .
?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825229 .
?targetMotifMatchRegionMatchBeginMF_01825229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01825222 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825230 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825219, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825219) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825219, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ9I3W9220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825221, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825221) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825221, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825221) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_01825222) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_01825234 .
?templateMotifSequenceMatchRegionQ9I3W9239 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9240 .
?templateMotifSequenceMatchBeginQ9I3W9240 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W9235 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9241 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_01825236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825244 .
?targetMotifMatchRegionMatchBeginMF_01825244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01825237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825245 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825234, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825234) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825234, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionQ9I3W9235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825236, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825236) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825236, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825236) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_01825237) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t248) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9254 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9256 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_01825249 .
?templateMotifSequenceMatchRegionQ9I3W9254 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9255 .
?templateMotifSequenceMatchBeginQ9I3W9255 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W9250 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9256 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825260 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_01825251 .
?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825259 .
?targetMotifMatchRegionMatchBeginMF_01825259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01825252 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825260 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825249, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825249) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825249, CONCAT('^(?:-*[^-]){', STR(((257 - ?templateMotifSequenceMatchBeginPositionQ9I3W9250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825251, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825251) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825251, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825251) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) .
BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_01825252) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch268 faldo:location ?templateMotifSequenceMatchRegionQ9I3W9269 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I3W9271 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I3W9MF_01825264 .
?templateMotifSequenceMatchRegionQ9I3W9269 faldo:begin ?templateMotifSequenceMatchBeginQ9I3W9270 .
?templateMotifSequenceMatchBeginQ9I3W9270 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I3W9265 ;
faldo:reference isoform:Q9I3W9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I3W9271 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
?targetMotifMatch272 faldo:location ?targetMotifMatchRegionMatch273 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01825275 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I3W9MF_01825266 .
?targetMotifMatchRegionMatch273 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01825274 .
?targetMotifMatchRegionMatchBeginMF_01825274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01825267 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01825275 edam:has_input signature:MF_01825 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I3W9MF_01825264, 1, (STRLEN(?templateMotifCigarQ9I3W9MF_01825264) - STRLEN(REPLACE(?templateMotifCigarQ9I3W9MF_01825264, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionQ9I3W9265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825266, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825266) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I3W9MF_01825266, 1, (STRLEN(?targetMotifMatchCigarQ9I3W9MF_01825266) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I3W9MF_01825266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) .
BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_01825267) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t278) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01825a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
}
"xsd:string |
