| http://purl.uniprot.org/unirules/MF_01934#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:676602 up:source unirule:MF_01934 .
_:676603 up:source unirule:MF_01934 .
_:676604 up:source unirule:MF_01934 .
_:676605 up:source unirule:MF_01934 .
_:676606 up:source unirule:MF_01934 .
_:676607 up:source unirule:MF_01934 .
_:676608 up:source unirule:MF_01934 .
_:676609 up:source unirule:MF_01934 .
_:676610 up:source unirule:MF_01934 .
_:676611 up:source unirule:MF_01934 .
_:676612 up:source unirule:MF_01934 .
_:676613 up:source unirule:MF_01934 .
_:676614 up:source unirule:MF_01934 .
_:676615 up:source unirule:MF_01934 .
_:676616 up:source unirule:MF_01934 .
_:676617 up:source unirule:MF_01934 .
_:676618 up:source unirule:MF_01934 .
_:676619 up:source unirule:MF_01934 .
_:676620 up:source unirule:MF_01934 .
_:676621 up:source unirule:MF_01934 .
_:676622 up:source unirule:MF_01934 .
_:676623 up:source unirule:MF_01934 .
_:676624 up:source unirule:MF_01934 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0008935 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.3.36' ;
up:fullName '1,4-dihydroxy-2-naphthoyl-CoA synthase' ;
up:shortName 'DHNA-CoA synthase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'menB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Quinol/quinone metabolism; 1,4-dihydroxy-2-naphthoate biosynthesis; 1,4-dihydroxy-2-naphthoate from chorismate: step 6/7.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.' .
?case8 up:classifiedWith GO:0042372 .
?case9 up:classifiedWith GO:0009234 ,
keyword:474 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:17544 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalysis' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb25 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf ?molecule28 .
?molecule28 rdfs:label 'substrate' .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf ?molecule36 .
?molecule36 rdfs:label 'substrate' .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf ?molecule44 .
?molecule44 rdfs:label 'substrate' .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf ?molecule52 .
?molecule52 rdfs:label 'substrate' .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf ?molecule60 .
?molecule60 rdfs:label 'substrate' .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb65 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf ?molecule68 .
?molecule68 rdfs:label 'substrate' .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf ?molecule76 .
?molecule76 rdfs:label 'substrate' .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf ?molecule84 .
?molecule84 rdfs:label 'substrate' .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalysis' .
?pfsb89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalysis' .
?pfsb95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
_:676625 a rdf:Statement ;
up:attribution _:676602 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:676626 a rdf:Statement ;
up:attribution _:676603 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:676627 a rdf:Statement ;
up:attribution _:676604 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:676628 a rdf:Statement ;
up:attribution _:676605 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:676629 a rdf:Statement ;
up:attribution _:676606 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:676630 a rdf:Statement ;
up:attribution _:676607 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:676631 a rdf:Statement ;
up:attribution _:676608 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:676632 a rdf:Statement ;
up:attribution _:676609 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008935 .
_:676633 a rdf:Statement ;
up:attribution _:676610 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042372 .
_:676634 a rdf:Statement ;
up:attribution _:676611 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:474 .
_:676635 a rdf:Statement ;
up:attribution _:676612 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009234 .
_:676636 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:676637 a rdf:Statement ;
up:attribution _:676613 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:676638 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:676639 a rdf:Statement ;
up:attribution _:676614 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:676640 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:676641 a rdf:Statement ;
up:attribution _:676615 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:676642 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:676643 a rdf:Statement ;
up:attribution _:676616 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:676644 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:676645 a rdf:Statement ;
up:attribution _:676617 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:676646 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:676647 a rdf:Statement ;
up:attribution _:676618 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:676648 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:676649 a rdf:Statement ;
up:attribution _:676619 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:676650 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:676651 a rdf:Statement ;
up:attribution _:676620 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:676652 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:676653 a rdf:Statement ;
up:attribution _:676621 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:676654 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:676655 a rdf:Statement ;
up:attribution _:676622 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:676656 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:676657 a rdf:Statement ;
up:attribution _:676623 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:676658 a rdf:Statement ;
up:source unirule:MF_01934 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:676659 a rdf:Statement ;
up:attribution _:676624 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01934
#Rule MF_01934 Created by:? on:2014-10-08 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon99 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01934 .
?thisOrganism rdfs:subClassOf+ ?supertaxon99 .
BIND(URI(CONCAT(STR(?this), '#MF_01934a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP0ABU0105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABU0MF_01934100 .
?templateMotifSequenceMatchRegionP0ABU0105 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0106 .
?templateMotifSequenceMatchBeginP0ABU0106 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0101 ;
faldo:reference isoform:P0ABU0-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABU0107 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABU0MF_01934102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934110 .
?targetMotifMatchRegionMatchBeginMF_01934110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934111 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?taghydrogencarbonate) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934100, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934100) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934100, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionP0ABU0101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934102, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934102) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934102, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934102) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01934103) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934100, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934100) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934100, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP0ABU0101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934102, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934102) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934102, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934102) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01934103) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)) = 'QTG')) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP9WNP5122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNP5124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNP5MF_01934117 .
?templateMotifSequenceMatchRegionP9WNP5122 faldo:begin ?templateMotifSequenceMatchBeginP9WNP5123 .
?templateMotifSequenceMatchBeginP9WNP5123 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNP5118 ;
faldo:reference isoform:P9WNP5-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNP5124 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNP5MF_01934119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934127 .
?targetMotifMatchRegionMatchBeginMF_01934127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934128 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNP5MF_01934117, 1, (STRLEN(?templateMotifCigarP9WNP5MF_01934117) - STRLEN(REPLACE(?templateMotifCigarP9WNP5MF_01934117, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionP9WNP5118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNP5MF_01934119, 1, (STRLEN(?targetMotifMatchCigarP9WNP5MF_01934119) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNP5MF_01934119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNP5MF_01934119, 1, (STRLEN(?targetMotifMatchCigarP9WNP5MF_01934119) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNP5MF_01934119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01934120) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs2t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP0ABU0137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABU0MF_01934132 .
?templateMotifSequenceMatchRegionP0ABU0137 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0138 .
?templateMotifSequenceMatchBeginP0ABU0138 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0133 ;
faldo:reference isoform:P0ABU0-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABU0139 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABU0MF_01934134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934142 .
?targetMotifMatchRegionMatchBeginMF_01934142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934143 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934132, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934132) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934132, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionP0ABU0133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934134, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934134) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934134, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934134) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01934135) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934132, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934132) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934132, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP0ABU0133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934134, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934134) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934134, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934134) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01934135) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs3t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse26) .
FILTER ((BOUND(?thisPositionOn29) && BOUND(?thisPositionOn30))) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP0ABU0154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABU0MF_01934149 .
?templateMotifSequenceMatchRegionP0ABU0154 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0155 .
?templateMotifSequenceMatchBeginP0ABU0155 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0150 ;
faldo:reference isoform:P0ABU0-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABU0156 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABU0MF_01934151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934159 .
?targetMotifMatchRegionMatchBeginMF_01934159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934160 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934149, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934149) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934149, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP0ABU0150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934151, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934151) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934151, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934151) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01934152) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934149, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934149) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934149, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP0ABU0150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934151, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934151) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934151, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934151) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_01934152) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs3t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) .
FILTER (REGEX('[SAVT]GG[DN]Q', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP0ABU0171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABU0MF_01934166 .
?templateMotifSequenceMatchRegionP0ABU0171 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0172 .
?templateMotifSequenceMatchBeginP0ABU0172 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0167 ;
faldo:reference isoform:P0ABU0-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABU0173 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABU0MF_01934168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934176 .
?targetMotifMatchRegionMatchBeginMF_01934176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934177 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934166, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934166) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934166, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP0ABU0167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934168, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934168) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934168, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934168) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_01934169) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs3t180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionP0ABU0186 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0188 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABU0MF_01934181 .
?templateMotifSequenceMatchRegionP0ABU0186 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0187 .
?templateMotifSequenceMatchBeginP0ABU0187 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0182 ;
faldo:reference isoform:P0ABU0-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABU0188 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934192 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABU0MF_01934183 .
?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934191 .
?targetMotifMatchRegionMatchBeginMF_01934191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934184 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934192 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934181, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934181) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934181, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP0ABU0182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934183, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934183) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934183, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934183) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) .
BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_01934184) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs3t195) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch200 faldo:location ?templateMotifSequenceMatchRegionP0ABU0201 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0203 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABU0MF_01934196 .
?templateMotifSequenceMatchRegionP0ABU0201 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0202 .
?templateMotifSequenceMatchBeginP0ABU0202 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0197 ;
faldo:reference isoform:P0ABU0-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABU0203 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch204 faldo:location ?targetMotifMatchRegionMatch205 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934207 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABU0MF_01934198 .
?targetMotifMatchRegionMatch205 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934206 .
?targetMotifMatchRegionMatchBeginMF_01934206 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934199 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934207 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934196, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934196) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934196, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP0ABU0197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1208) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934198, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934198) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934198, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934198) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), '')))), '[^-]', ''))) AS ?step2209) .
BIND(((?step2209 + ?targetMotifMatchRegionMatchBeginPositionMF_01934199) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs3t210) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch215 faldo:location ?templateMotifSequenceMatchRegionP0ABU0216 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0218 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABU0MF_01934211 .
?templateMotifSequenceMatchRegionP0ABU0216 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0217 .
?templateMotifSequenceMatchBeginP0ABU0217 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0212 ;
faldo:reference isoform:P0ABU0-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABU0218 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch219 faldo:location ?targetMotifMatchRegionMatch220 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934222 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABU0MF_01934213 .
?targetMotifMatchRegionMatch220 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934221 .
?targetMotifMatchRegionMatchBeginMF_01934221 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934214 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934222 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934211, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934211) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934211, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP0ABU0212) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1223) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934213, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934213) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934213, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934213) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), '')))), '[^-]', ''))) AS ?step2224) .
BIND(((?step2224 + ?targetMotifMatchRegionMatchBeginPositionMF_01934214) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs3t225) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch230 faldo:location ?templateMotifSequenceMatchRegionP0ABU0231 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0233 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABU0MF_01934226 .
?templateMotifSequenceMatchRegionP0ABU0231 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0232 .
?templateMotifSequenceMatchBeginP0ABU0232 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0227 ;
faldo:reference isoform:P0ABU0-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABU0233 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch234 faldo:location ?targetMotifMatchRegionMatch235 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934237 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABU0MF_01934228 .
?targetMotifMatchRegionMatch235 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934236 .
?targetMotifMatchRegionMatchBeginMF_01934236 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934229 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934237 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934226, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934226) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934226, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionP0ABU0227) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1238) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934228, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934228) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934228, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934228) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), '')))), '[^-]', ''))) AS ?step2239) .
BIND(((?step2239 + ?targetMotifMatchRegionMatchBeginPositionMF_01934229) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs3t240) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch245 faldo:location ?templateMotifSequenceMatchRegionP0ABU0246 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0248 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABU0MF_01934241 .
?templateMotifSequenceMatchRegionP0ABU0246 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0247 .
?templateMotifSequenceMatchBeginP0ABU0247 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0242 ;
faldo:reference isoform:P0ABU0-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABU0248 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch249 faldo:location ?targetMotifMatchRegionMatch250 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934252 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABU0MF_01934243 .
?targetMotifMatchRegionMatch250 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934251 .
?targetMotifMatchRegionMatchBeginMF_01934251 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934244 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934252 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934241, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934241) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934241, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP0ABU0242) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934243, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934243) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934243, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934243) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) .
BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_01934244) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs3t255) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP0ABU0261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABU0MF_01934256 .
?templateMotifSequenceMatchRegionP0ABU0261 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0262 .
?templateMotifSequenceMatchBeginP0ABU0262 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0257 ;
faldo:reference isoform:P0ABU0-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABU0263 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABU0MF_01934258 .
?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934266 .
?targetMotifMatchRegionMatchBeginMF_01934266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934267 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934256, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934256) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934256, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP0ABU0257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934258, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934258) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934258, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934258) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_01934259) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs3t270) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch275 faldo:location ?templateMotifSequenceMatchRegionP0ABU0276 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABU0278 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABU0MF_01934271 .
?templateMotifSequenceMatchRegionP0ABU0276 faldo:begin ?templateMotifSequenceMatchBeginP0ABU0277 .
?templateMotifSequenceMatchBeginP0ABU0277 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABU0272 ;
faldo:reference isoform:P0ABU0-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABU0278 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
?targetMotifMatch279 faldo:location ?targetMotifMatchRegionMatch280 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01934282 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABU0MF_01934273 .
?targetMotifMatchRegionMatch280 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01934281 .
?targetMotifMatchRegionMatchBeginMF_01934281 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01934274 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01934282 edam:has_input signature:MF_01934 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABU0MF_01934271, 1, (STRLEN(?templateMotifCigarP0ABU0MF_01934271) - STRLEN(REPLACE(?templateMotifCigarP0ABU0MF_01934271, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionP0ABU0272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1283) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934273, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934273) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABU0MF_01934273, 1, (STRLEN(?targetMotifMatchCigarP0ABU0MF_01934273) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABU0MF_01934273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), '')))), '[^-]', ''))) AS ?step2284) .
BIND(((?step2284 + ?targetMotifMatchRegionMatchBeginPositionMF_01934274) - 1) AS ?thisPositionOn97) .
BIND(?thisPositionOn97 AS ?thisPositionOn98) .
BIND(?this AS ?pfs3t285) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01934a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag286) .
}
BIND(IF(BOUND(?taghydrogencarbonate), ?caseWithTag286, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1117 .
})) .
BIND(?this AS ?case9) .
}
}
"xsd:string |
