| http://purl.uniprot.org/unirules/MF_01967#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:689940 up:source unirule:MF_01967 .
_:689941 up:source unirule:MF_01967 .
_:689942 up:source unirule:MF_01967 .
_:689943 up:source unirule:MF_01967 .
_:689944 up:source unirule:MF_01967 .
_:689945 up:source unirule:MF_01967 .
_:689946 up:source unirule:MF_01967 .
_:689947 up:source unirule:MF_01967 .
_:689948 up:source unirule:MF_01967 .
_:689949 up:source unirule:MF_01967 .
_:689950 up:source unirule:MF_01967 .
_:689951 up:source unirule:MF_01967 .
_:689952 up:source unirule:MF_01967 .
_:689953 up:source unirule:MF_01967 .
_:689954 up:source unirule:MF_01967 .
_:689955 up:source unirule:MF_01967 .
_:689956 up:source unirule:MF_01967 .
_:689957 up:source unirule:MF_01967 .
_:689958 up:source unirule:MF_01967 .
_:689959 up:source unirule:MF_01967 .
_:689960 up:source unirule:MF_01967 .
_:689961 up:source unirule:MF_01967 .
_:689962 up:source unirule:MF_01967 .
_:689963 up:source unirule:MF_01967 .
_:689964 up:source unirule:MF_01967 .
_:689965 up:source unirule:MF_01967 .
_:689966 up:source unirule:MF_01967 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0006476 ,
GO:0034979 ,
GO:0070403 ,
keyword:520 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.286' ;
up:fullName 'NAD-dependent protein deacetylase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Regulatory protein SIR2 homolog' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'cobB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the sirtuin family. Class II subfamily.' .
?case9 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs10 up:annotation ?annotation11 ,
?annotation17 ,
?annotation23 ,
?annotation29 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:29105 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29105 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:29105 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:29105 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:57540 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:57540 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:57540 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:57540 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:57540 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
_:689967 a rdf:Statement ;
up:attribution _:689940 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:689968 a rdf:Statement ;
up:attribution _:689941 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:689969 a rdf:Statement ;
up:attribution _:689942 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:689970 a rdf:Statement ;
up:attribution _:689943 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:689971 a rdf:Statement ;
up:attribution _:689944 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:689972 a rdf:Statement ;
up:attribution _:689945 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:689973 a rdf:Statement ;
up:attribution _:689946 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:689974 a rdf:Statement ;
up:attribution _:689947 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:689975 a rdf:Statement ;
up:attribution _:689948 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:689976 a rdf:Statement ;
up:attribution _:689949 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:689977 a rdf:Statement ;
up:attribution _:689950 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:689978 a rdf:Statement ;
up:attribution _:689951 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0034979 .
_:689979 a rdf:Statement ;
up:attribution _:689952 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070403 .
_:689980 a rdf:Statement ;
up:attribution _:689953 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006476 .
_:689981 a rdf:Statement ;
up:attribution _:689954 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:689982 a rdf:Statement ;
up:attribution _:689955 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:689983 a rdf:Statement ;
up:attribution _:689956 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:689984 a rdf:Statement ;
up:source unirule:MF_01967 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:689985 a rdf:Statement ;
up:attribution _:689957 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:689986 a rdf:Statement ;
up:source unirule:MF_01967 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:689987 a rdf:Statement ;
up:attribution _:689958 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:689988 a rdf:Statement ;
up:source unirule:MF_01967 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:689989 a rdf:Statement ;
up:attribution _:689959 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:689990 a rdf:Statement ;
up:source unirule:MF_01967 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:689991 a rdf:Statement ;
up:attribution _:689960 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:689992 a rdf:Statement ;
up:source unirule:MF_01967 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:689993 a rdf:Statement ;
up:attribution _:689961 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:689994 a rdf:Statement ;
up:source unirule:MF_01967 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:689995 a rdf:Statement ;
up:attribution _:689962 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:689996 a rdf:Statement ;
up:source unirule:MF_01967 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:689997 a rdf:Statement ;
up:attribution _:689963 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:689998 a rdf:Statement ;
up:source unirule:MF_01967 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:689999 a rdf:Statement ;
up:attribution _:689964 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:690000 a rdf:Statement ;
up:source unirule:MF_01967 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:690001 a rdf:Statement ;
up:attribution _:689965 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:690002 a rdf:Statement ;
up:source unirule:MF_01967 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:690003 a rdf:Statement ;
up:attribution _:689966 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01967
#Rule MF_01967 Created by:? on:2012-04-02 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01967 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01967a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01967a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01967a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01967a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01967a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01967a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E781 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E783 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_0196776 .
?templateMotifSequenceMatchRegionQ9Y6E781 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E782 .
?templateMotifSequenceMatchBeginQ9Y6E782 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E777 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E783 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0196787 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_0196778 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0196786 .
?targetMotifMatchRegionMatchBeginMF_0196786 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0196779 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0196787 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_0196776, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_0196776) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_0196776, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionQ9Y6E777) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196778, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196778) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196778, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196778) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0196779) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_0196776, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_0196776) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_0196776, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionQ9Y6E777) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196778, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196778) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196778, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196778) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0196779) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_0196776, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_0196776) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_0196776, CONCAT('^(?:-*[^-]){', STR(((220 - ?templateMotifSequenceMatchBeginPositionQ9Y6E777) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196778, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196778) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196778, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196778) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0196779) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_0196776, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_0196776) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_0196776, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionQ9Y6E777) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196778, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196778) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_0196778, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_0196778) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_0196778, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0196779) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'C')) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967100 .
?templateMotifSequenceMatchRegionQ9Y6E7105 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7106 .
?templateMotifSequenceMatchBeginQ9Y6E7106 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7101 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7107 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967110 .
?targetMotifMatchRegionMatchBeginMF_01967110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967111 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967100, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967100) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967100, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967102, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967102) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967102, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967102) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01967103) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (BOUND(?thisPositionOn40)) .
BIND(URI(CONCAT(STR(?this), '#MF_01967a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967115 .
?templateMotifSequenceMatchRegionQ9Y6E7120 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7121 .
?templateMotifSequenceMatchBeginQ9Y6E7121 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7116 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7122 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967125 .
?targetMotifMatchRegionMatchBeginMF_01967125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967126 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967115, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967115) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967115, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967117, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967117, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01967118) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967115, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967115) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967115, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967117, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967117, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01967118) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER (REGEX('GAG[ARNDCQEGHILKMFPSTWYVBZJUOX]ST[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G[IV]PDYR[ARNDCQEGHILKMFPSTWYVBZJUOX]{7)', SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01967a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967132 .
?templateMotifSequenceMatchRegionQ9Y6E7137 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7138 .
?templateMotifSequenceMatchBeginQ9Y6E7138 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7133 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7139 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967142 .
?targetMotifMatchRegionMatchBeginMF_01967142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967143 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967132, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967132) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967132, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967134, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967134) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967134, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967134) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01967135) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967132, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967132) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967132, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967134, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967134) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967134, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967134) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01967135) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, (?thisPositionOn55 - ?thisPositionOn54)) = 'QNVD')) .
BIND(URI(CONCAT(STR(?this), '#MF_01967a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967149 .
?templateMotifSequenceMatchRegionQ9Y6E7154 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7155 .
?templateMotifSequenceMatchBeginQ9Y6E7155 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7150 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7156 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967151 .
?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967159 .
?targetMotifMatchRegionMatchBeginMF_01967159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967160 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967149, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967149) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967149, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967151, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967151, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01967152) - 1) AS ?thisPositionOn61) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967149, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967149) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967149, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967151, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967151, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_01967152) - 1) AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER (REGEX('G[ST]S', SUBSTR(?thisSequenceValue, ?thisPositionOn61, (?thisPositionOn62 - ?thisPositionOn61)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01967a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967166 .
?templateMotifSequenceMatchRegionQ9Y6E7171 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7172 .
?templateMotifSequenceMatchBeginQ9Y6E7172 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7167 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7173 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967176 .
?targetMotifMatchRegionMatchBeginMF_01967176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967177 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967166, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967166) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967166, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967168, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967168) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967168, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967168) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_01967169) - 1) AS ?thisPositionOn68) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967166, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967166) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967166, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967168, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967168) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967168, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967168) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_01967169) - 1) AS ?thisPositionOn69) .
BIND(?this AS ?pfs2t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn68, (?thisPositionOn69 - ?thisPositionOn68)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01967a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionQ9Y6E7188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y6E7190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y6E7MF_01967183 .
?templateMotifSequenceMatchRegionQ9Y6E7188 faldo:begin ?templateMotifSequenceMatchBeginQ9Y6E7189 .
?templateMotifSequenceMatchBeginQ9Y6E7189 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y6E7184 ;
faldo:reference isoform:Q9Y6E7-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y6E7190 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01967194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y6E7MF_01967185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01967193 .
?targetMotifMatchRegionMatchBeginMF_01967193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01967186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01967194 edam:has_input signature:MF_01967 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y6E7MF_01967183, 1, (STRLEN(?templateMotifCigarQ9Y6E7MF_01967183) - STRLEN(REPLACE(?templateMotifCigarQ9Y6E7MF_01967183, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionQ9Y6E7184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967185, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967185) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y6E7MF_01967185, 1, (STRLEN(?targetMotifMatchCigarQ9Y6E7MF_01967185) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y6E7MF_01967185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_01967186) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs2t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01967a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag198) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag198, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
