| http://purl.uniprot.org/unirules/MF_02028#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:714739 up:source unirule:MF_02028 .
_:714740 up:source unirule:MF_02028 .
_:714741 up:source unirule:MF_02028 .
_:714742 up:source unirule:MF_02028 .
_:714743 up:source unirule:MF_02028 .
_:714744 up:source unirule:MF_02028 .
_:714745 up:source unirule:MF_02028 .
_:714746 up:source unirule:MF_02028 .
_:714747 up:source unirule:MF_02028 .
_:714748 up:source unirule:MF_02028 .
_:714749 up:source unirule:MF_02028 .
_:714750 up:source unirule:MF_02028 .
_:714751 up:source unirule:MF_02028 .
_:714752 up:source unirule:MF_02028 .
_:714753 up:source unirule:MF_02028 .
_:714754 up:source unirule:MF_02028 .
_:714755 up:source unirule:MF_02028 .
_:714756 up:source unirule:MF_02028 .
_:714757 up:source unirule:MF_02028 .
_:714758 up:source unirule:MF_02028 .
_:714759 up:source unirule:MF_02028 .
_:714760 up:source unirule:MF_02028 .
_:714761 up:source unirule:MF_02028 .
_:714762 up:source unirule:MF_02028 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0005737 ,
GO:0008761 ,
GO:0009246 ,
keyword:413 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.1.3.14' ;
up:fullName 'UDP-N-acetylglucosamine 2-epimerase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'UDP-GlcNAc-2-epimerase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'wecB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible epimerization at C-2 of UDP-N-acetylglucosamine (UDP-GlcNAc) and thereby provides bacteria with UDP-N-acetylmannosamine (UDP-ManNAc), the activated donor of ManNAc residues.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Bacterial outer membrane biogenesis; enterobacterial common antigen biosynthesis.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the UDP-N-acetylglucosamine 2-epimerase family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf ?molecule16 .
?molecule16 rdfs:label 'substrate' .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf ?molecule24 .
?molecule24 rdfs:label 'substrate' .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf ?molecule32 .
?molecule32 rdfs:label 'substrate' .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf ?molecule40 .
?molecule40 rdfs:label 'substrate' .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf ?molecule48 .
?molecule48 rdfs:label 'substrate' .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf ?molecule56 .
?molecule56 rdfs:label 'substrate' .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf ?molecule64 .
?molecule64 rdfs:label 'substrate' .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf ?molecule72 .
?molecule72 rdfs:label 'substrate' .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf ?molecule80 .
?molecule80 rdfs:label 'substrate' .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf ?molecule88 .
?molecule88 rdfs:label 'substrate' .
_:714763 a rdf:Statement ;
up:attribution _:714739 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:714764 a rdf:Statement ;
up:attribution _:714740 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:714765 a rdf:Statement ;
up:attribution _:714741 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:714766 a rdf:Statement ;
up:attribution _:714742 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:714767 a rdf:Statement ;
up:attribution _:714743 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:714768 a rdf:Statement ;
up:attribution _:714744 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:714769 a rdf:Statement ;
up:attribution _:714745 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:714770 a rdf:Statement ;
up:attribution _:714746 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:714771 a rdf:Statement ;
up:attribution _:714747 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:714772 a rdf:Statement ;
up:attribution _:714748 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:714773 a rdf:Statement ;
up:attribution _:714749 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:714774 a rdf:Statement ;
up:attribution _:714750 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008761 .
_:714775 a rdf:Statement ;
up:attribution _:714751 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009246 .
_:714776 a rdf:Statement ;
up:attribution _:714752 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:714777 a rdf:Statement ;
up:source unirule:MF_02028 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:714778 a rdf:Statement ;
up:attribution _:714753 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:714779 a rdf:Statement ;
up:source unirule:MF_02028 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:714780 a rdf:Statement ;
up:attribution _:714754 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:714781 a rdf:Statement ;
up:source unirule:MF_02028 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:714782 a rdf:Statement ;
up:attribution _:714755 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:714783 a rdf:Statement ;
up:source unirule:MF_02028 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:714784 a rdf:Statement ;
up:attribution _:714756 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:714785 a rdf:Statement ;
up:source unirule:MF_02028 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:714786 a rdf:Statement ;
up:attribution _:714757 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:714787 a rdf:Statement ;
up:source unirule:MF_02028 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:714788 a rdf:Statement ;
up:attribution _:714758 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:714789 a rdf:Statement ;
up:source unirule:MF_02028 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:714790 a rdf:Statement ;
up:attribution _:714759 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:714791 a rdf:Statement ;
up:source unirule:MF_02028 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:714792 a rdf:Statement ;
up:attribution _:714760 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:714793 a rdf:Statement ;
up:source unirule:MF_02028 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:714794 a rdf:Statement ;
up:attribution _:714761 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:714795 a rdf:Statement ;
up:source unirule:MF_02028 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:714796 a rdf:Statement ;
up:attribution _:714762 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02028
#Rule MF_02028 Created by:? on:2015-05-06 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02028 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_02028a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionP2782896 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2782898 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27828MF_0202891 .
?templateMotifSequenceMatchRegionP2782896 faldo:begin ?templateMotifSequenceMatchBeginP2782897 .
?templateMotifSequenceMatchBeginP2782897 faldo:position ?templateMotifSequenceMatchBeginPositionP2782892 ;
faldo:reference isoform:P27828-1 .
?templateMotifSequenceProfileAlignmentOperationP2782898 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02028102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27828MF_0202893 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02028101 .
?targetMotifMatchRegionMatchBeginMF_02028101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0202894 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02028102 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27828MF_0202891, 1, (STRLEN(?templateMotifCigarP27828MF_0202891) - STRLEN(REPLACE(?templateMotifCigarP27828MF_0202891, CONCAT('^(?:-*[^-]){', STR(((290 - ?templateMotifSequenceMatchBeginPositionP2782892) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27828MF_0202893, 1, (STRLEN(?targetMotifMatchCigarP27828MF_0202893) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_0202893, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27828MF_0202893, 1, (STRLEN(?targetMotifMatchCigarP27828MF_0202893) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_0202893, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0202894) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27828MF_0202891, 1, (STRLEN(?templateMotifCigarP27828MF_0202891) - STRLEN(REPLACE(?templateMotifCigarP27828MF_0202891, CONCAT('^(?:-*[^-]){', STR(((292 - ?templateMotifSequenceMatchBeginPositionP2782892) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27828MF_0202893, 1, (STRLEN(?targetMotifMatchCigarP27828MF_0202893) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_0202893, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27828MF_0202893, 1, (STRLEN(?targetMotifMatchCigarP27828MF_0202893) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_0202893, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0202894) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)) = 'SGG')) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP27828113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27828115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27828MF_02028108 .
?templateMotifSequenceMatchRegionP27828113 faldo:begin ?templateMotifSequenceMatchBeginP27828114 .
?templateMotifSequenceMatchBeginP27828114 faldo:position ?templateMotifSequenceMatchBeginPositionP27828109 ;
faldo:reference isoform:P27828-1 .
?templateMotifSequenceProfileAlignmentOperationP27828115 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02028119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27828MF_02028110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02028118 .
?targetMotifMatchRegionMatchBeginMF_02028118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02028111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02028119 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27828MF_02028108, 1, (STRLEN(?templateMotifCigarP27828MF_02028108) - STRLEN(REPLACE(?templateMotifCigarP27828MF_02028108, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP27828109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27828MF_02028110, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028110) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27828MF_02028110, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028110) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_02028111) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP27828128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27828130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27828MF_02028123 .
?templateMotifSequenceMatchRegionP27828128 faldo:begin ?templateMotifSequenceMatchBeginP27828129 .
?templateMotifSequenceMatchBeginP27828129 faldo:position ?templateMotifSequenceMatchBeginPositionP27828124 ;
faldo:reference isoform:P27828-1 .
?templateMotifSequenceProfileAlignmentOperationP27828130 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02028134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27828MF_02028125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02028133 .
?targetMotifMatchRegionMatchBeginMF_02028133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02028126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02028134 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27828MF_02028123, 1, (STRLEN(?templateMotifCigarP27828MF_02028123) - STRLEN(REPLACE(?templateMotifCigarP27828MF_02028123, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionP27828124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27828MF_02028125, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028125) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27828MF_02028125, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028125) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_02028126) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionP27828143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27828145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27828MF_02028138 .
?templateMotifSequenceMatchRegionP27828143 faldo:begin ?templateMotifSequenceMatchBeginP27828144 .
?templateMotifSequenceMatchBeginP27828144 faldo:position ?templateMotifSequenceMatchBeginPositionP27828139 ;
faldo:reference isoform:P27828-1 .
?templateMotifSequenceProfileAlignmentOperationP27828145 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02028149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27828MF_02028140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02028148 .
?targetMotifMatchRegionMatchBeginMF_02028148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02028141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02028149 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27828MF_02028138, 1, (STRLEN(?templateMotifCigarP27828MF_02028138) - STRLEN(REPLACE(?templateMotifCigarP27828MF_02028138, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP27828139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27828MF_02028140, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028140) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27828MF_02028140, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028140) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_02028141) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP27828158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27828160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27828MF_02028153 .
?templateMotifSequenceMatchRegionP27828158 faldo:begin ?templateMotifSequenceMatchBeginP27828159 .
?templateMotifSequenceMatchBeginP27828159 faldo:position ?templateMotifSequenceMatchBeginPositionP27828154 ;
faldo:reference isoform:P27828-1 .
?templateMotifSequenceProfileAlignmentOperationP27828160 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02028164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27828MF_02028155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02028163 .
?targetMotifMatchRegionMatchBeginMF_02028163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02028156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02028164 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27828MF_02028153, 1, (STRLEN(?templateMotifCigarP27828MF_02028153) - STRLEN(REPLACE(?templateMotifCigarP27828MF_02028153, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP27828154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27828MF_02028155, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028155) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27828MF_02028155, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028155) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_02028156) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionP27828173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27828175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27828MF_02028168 .
?templateMotifSequenceMatchRegionP27828173 faldo:begin ?templateMotifSequenceMatchBeginP27828174 .
?templateMotifSequenceMatchBeginP27828174 faldo:position ?templateMotifSequenceMatchBeginPositionP27828169 ;
faldo:reference isoform:P27828-1 .
?templateMotifSequenceProfileAlignmentOperationP27828175 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02028179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27828MF_02028170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02028178 .
?targetMotifMatchRegionMatchBeginMF_02028178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02028171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02028179 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27828MF_02028168, 1, (STRLEN(?templateMotifCigarP27828MF_02028168) - STRLEN(REPLACE(?templateMotifCigarP27828MF_02028168, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionP27828169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27828MF_02028170, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028170) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27828MF_02028170, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028170) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_02028171) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP27828188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27828190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27828MF_02028183 .
?templateMotifSequenceMatchRegionP27828188 faldo:begin ?templateMotifSequenceMatchBeginP27828189 .
?templateMotifSequenceMatchBeginP27828189 faldo:position ?templateMotifSequenceMatchBeginPositionP27828184 ;
faldo:reference isoform:P27828-1 .
?templateMotifSequenceProfileAlignmentOperationP27828190 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02028194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27828MF_02028185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02028193 .
?targetMotifMatchRegionMatchBeginMF_02028193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02028186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02028194 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27828MF_02028183, 1, (STRLEN(?templateMotifCigarP27828MF_02028183) - STRLEN(REPLACE(?templateMotifCigarP27828MF_02028183, CONCAT('^(?:-*[^-]){', STR(((271 - ?templateMotifSequenceMatchBeginPositionP27828184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27828MF_02028185, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028185) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27828MF_02028185, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028185) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_02028186) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP27828203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27828205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27828MF_02028198 .
?templateMotifSequenceMatchRegionP27828203 faldo:begin ?templateMotifSequenceMatchBeginP27828204 .
?templateMotifSequenceMatchBeginP27828204 faldo:position ?templateMotifSequenceMatchBeginPositionP27828199 ;
faldo:reference isoform:P27828-1 .
?templateMotifSequenceProfileAlignmentOperationP27828205 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02028209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27828MF_02028200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02028208 .
?targetMotifMatchRegionMatchBeginMF_02028208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02028201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02028209 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27828MF_02028198, 1, (STRLEN(?templateMotifCigarP27828MF_02028198) - STRLEN(REPLACE(?templateMotifCigarP27828MF_02028198, CONCAT('^(?:-*[^-]){', STR(((276 - ?templateMotifSequenceMatchBeginPositionP27828199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27828MF_02028200, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028200) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27828MF_02028200, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028200) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_02028201) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionP27828218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27828220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27828MF_02028213 .
?templateMotifSequenceMatchRegionP27828218 faldo:begin ?templateMotifSequenceMatchBeginP27828219 .
?templateMotifSequenceMatchBeginP27828219 faldo:position ?templateMotifSequenceMatchBeginPositionP27828214 ;
faldo:reference isoform:P27828-1 .
?templateMotifSequenceProfileAlignmentOperationP27828220 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02028224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27828MF_02028215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02028223 .
?targetMotifMatchRegionMatchBeginMF_02028223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02028216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02028224 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27828MF_02028213, 1, (STRLEN(?templateMotifCigarP27828MF_02028213) - STRLEN(REPLACE(?templateMotifCigarP27828MF_02028213, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionP27828214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27828MF_02028215, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028215) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27828MF_02028215, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028215) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_02028216) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionP27828233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27828235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27828MF_02028228 .
?templateMotifSequenceMatchRegionP27828233 faldo:begin ?templateMotifSequenceMatchBeginP27828234 .
?templateMotifSequenceMatchBeginP27828234 faldo:position ?templateMotifSequenceMatchBeginPositionP27828229 ;
faldo:reference isoform:P27828-1 .
?templateMotifSequenceProfileAlignmentOperationP27828235 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02028239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27828MF_02028230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02028238 .
?targetMotifMatchRegionMatchBeginMF_02028238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02028231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02028239 edam:has_input signature:MF_02028 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27828MF_02028228, 1, (STRLEN(?templateMotifCigarP27828MF_02028228) - STRLEN(REPLACE(?templateMotifCigarP27828MF_02028228, CONCAT('^(?:-*[^-]){', STR(((313 - ?templateMotifSequenceMatchBeginPositionP27828229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27828MF_02028230, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028230) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27828MF_02028230, 1, (STRLEN(?targetMotifMatchCigarP27828MF_02028230) - STRLEN(REPLACE(?targetMotifMatchCigarP27828MF_02028230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_02028231) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse86) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02028a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
}
"xsd:string |
