| http://purl.uniprot.org/unirules/MF_02123#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:754291 up:source unirule:MF_02123 .
_:754292 up:source unirule:MF_02123 .
_:754293 up:source unirule:MF_02123 .
_:754294 up:source unirule:MF_02123 .
_:754295 up:source unirule:MF_02123 .
_:754296 up:source unirule:MF_02123 .
_:754297 up:source unirule:MF_02123 .
_:754298 up:source unirule:MF_02123 .
_:754299 up:source unirule:MF_02123 .
_:754300 up:source unirule:MF_02123 .
_:754301 up:source unirule:MF_02123 .
_:754302 up:source unirule:MF_02123 .
_:754303 up:source unirule:MF_02123 .
_:754304 up:source unirule:MF_02123 .
_:754305 up:source unirule:MF_02123 .
_:754306 up:source unirule:MF_02123 .
_:754307 up:source unirule:MF_02123 .
_:754308 up:source unirule:MF_02123 .
_:754309 up:source unirule:MF_02123 .
_:754310 up:source unirule:MF_02123 .
_:754311 up:source unirule:MF_02123 .
_:754312 up:source unirule:MF_02123 .
?this up:annotation ?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0005975 ,
GO:0016614 ,
GO:0070967 ,
keyword:119 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.98.2' ;
up:fullName 'F420-dependent glucose-6-phosphate dehydrogenase' ;
up:shortName 'FGD' ,
'G6PD' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'fgd' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the F420-dependent glucose-6-phosphate dehydrogenase family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:133980 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:133980 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:133980 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:133980 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:133980 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:133980 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf ?molecule67 .
?molecule67 rdfs:label 'substrate' .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf ?molecule75 .
?molecule75 rdfs:label 'substrate' .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf ?molecule83 .
?molecule83 rdfs:label 'substrate' .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf ?molecule91 .
?molecule91 rdfs:label 'substrate' .
_:754313 a rdf:Statement ;
up:attribution _:754291 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:754314 a rdf:Statement ;
up:attribution _:754292 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:754315 a rdf:Statement ;
up:attribution _:754293 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:754316 a rdf:Statement ;
up:attribution _:754294 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:754317 a rdf:Statement ;
up:attribution _:754295 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:754318 a rdf:Statement ;
up:attribution _:754296 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:754319 a rdf:Statement ;
up:attribution _:754297 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:754320 a rdf:Statement ;
up:attribution _:754298 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016614 .
_:754321 a rdf:Statement ;
up:attribution _:754299 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070967 .
_:754322 a rdf:Statement ;
up:attribution _:754300 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005975 .
_:754323 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:754324 a rdf:Statement ;
up:attribution _:754301 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:754325 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:754326 a rdf:Statement ;
up:attribution _:754302 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:754327 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:754328 a rdf:Statement ;
up:attribution _:754303 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:754329 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:754330 a rdf:Statement ;
up:attribution _:754304 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:754331 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:754332 a rdf:Statement ;
up:attribution _:754305 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:754333 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:754334 a rdf:Statement ;
up:attribution _:754306 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:754335 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:754336 a rdf:Statement ;
up:attribution _:754307 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:754337 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:754338 a rdf:Statement ;
up:attribution _:754308 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:754339 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:754340 a rdf:Statement ;
up:attribution _:754309 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:754341 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:754342 a rdf:Statement ;
up:attribution _:754310 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:754343 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:754344 a rdf:Statement ;
up:attribution _:754311 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:754345 a rdf:Statement ;
up:source unirule:MF_02123 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:754346 a rdf:Statement ;
up:attribution _:754312 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02123
#Rule MF_02123 Created by:? on:2011-08-29 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02123 .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(URI(CONCAT(STR(?this), '#MF_02123a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP9WNE199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_0212394 .
?templateMotifSequenceMatchRegionP9WNE199 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1100 .
?templateMotifSequenceMatchBeginP9WNE1100 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE195 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1101 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_0212396 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123104 .
?targetMotifMatchRegionMatchBeginMF_02123104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212397 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123105 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_0212394, 1, (STRLEN(?templateMotifCigarP9WNE1MF_0212394) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_0212394, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP9WNE195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_0212396, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_0212396) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_0212396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_0212396, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_0212396) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_0212396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0212397) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_0212394, 1, (STRLEN(?templateMotifCigarP9WNE1MF_0212394) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_0212394, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionP9WNE195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_0212396, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_0212396) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_0212396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_0212396, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_0212396) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_0212396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0212397) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[TS]G', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP9WNE1116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_02123111 .
?templateMotifSequenceMatchRegionP9WNE1116 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1117 .
?templateMotifSequenceMatchBeginP9WNE1117 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE1112 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1118 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_02123113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123121 .
?targetMotifMatchRegionMatchBeginMF_02123121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02123114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123122 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123111, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123111) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123111, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP9WNE1112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123113, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123113) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123113, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123113) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_02123114) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123111, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123111) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123111, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionP9WNE1112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123113, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123113) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123113, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123113) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_02123114) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[GS]G', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP9WNE1133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_02123128 .
?templateMotifSequenceMatchRegionP9WNE1133 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1134 .
?templateMotifSequenceMatchBeginP9WNE1134 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE1129 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1135 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_02123130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123138 .
?targetMotifMatchRegionMatchBeginMF_02123138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02123131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123139 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123128, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123128) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123128, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP9WNE1129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123130, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123130) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123130, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123130) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_02123131) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123128, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123128) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123128, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP9WNE1129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123130, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123130) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123130, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123130) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_02123131) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('[VALGSEQ][VMA]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionP9WNE1150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_02123145 .
?templateMotifSequenceMatchRegionP9WNE1150 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1151 .
?templateMotifSequenceMatchBeginP9WNE1151 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE1146 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1152 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_02123147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123155 .
?targetMotifMatchRegionMatchBeginMF_02123155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02123148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123156 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123145, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123145) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123145, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP9WNE1146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123147, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123147) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123147, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123147) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_02123148) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP9WNE1165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_02123160 .
?templateMotifSequenceMatchRegionP9WNE1165 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1166 .
?templateMotifSequenceMatchBeginP9WNE1166 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE1161 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1167 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_02123162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123170 .
?targetMotifMatchRegionMatchBeginMF_02123170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02123163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123171 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123160, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123160) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123160, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionP9WNE1161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123162, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123162) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123162, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123162) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_02123163) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP9WNE1180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_02123175 .
?templateMotifSequenceMatchRegionP9WNE1180 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1181 .
?templateMotifSequenceMatchBeginP9WNE1181 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE1176 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1182 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_02123177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123185 .
?targetMotifMatchRegionMatchBeginMF_02123185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02123178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123186 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123175, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123175) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123175, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP9WNE1176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123177, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123177) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123177, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123177) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_02123178) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP9WNE1195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_02123190 .
?templateMotifSequenceMatchRegionP9WNE1195 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1196 .
?templateMotifSequenceMatchBeginP9WNE1196 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE1191 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1197 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_02123192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123200 .
?targetMotifMatchRegionMatchBeginMF_02123200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02123193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123201 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123190, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123190) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123190, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP9WNE1191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123192, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123192) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123192, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123192) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_02123193) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP9WNE1210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_02123205 .
?templateMotifSequenceMatchRegionP9WNE1210 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1211 .
?templateMotifSequenceMatchBeginP9WNE1211 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE1206 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1212 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_02123207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123215 .
?targetMotifMatchRegionMatchBeginMF_02123215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02123208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123216 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123205, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123205) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123205, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP9WNE1206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123207, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123207) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123207, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123207) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_02123208) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP9WNE1225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_02123220 .
?templateMotifSequenceMatchRegionP9WNE1225 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1226 .
?templateMotifSequenceMatchBeginP9WNE1226 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE1221 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1227 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_02123222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123230 .
?targetMotifMatchRegionMatchBeginMF_02123230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02123223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123231 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123220, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123220) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123220, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP9WNE1221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123222, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123222) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123222, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123222) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_02123223) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP9WNE1240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_02123235 .
?templateMotifSequenceMatchRegionP9WNE1240 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1241 .
?templateMotifSequenceMatchBeginP9WNE1241 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE1236 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1242 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_02123237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123245 .
?targetMotifMatchRegionMatchBeginMF_02123245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02123238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123246 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123235, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123235) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123235, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionP9WNE1236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123237, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123237) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123237, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123237) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_02123238) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP9WNE1255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_02123250 .
?templateMotifSequenceMatchRegionP9WNE1255 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1256 .
?templateMotifSequenceMatchBeginP9WNE1256 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE1251 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1257 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_02123252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123260 .
?targetMotifMatchRegionMatchBeginMF_02123260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02123253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123261 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123250, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123250) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123250, CONCAT('^(?:-*[^-]){', STR(((259 - ?templateMotifSequenceMatchBeginPositionP9WNE1251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123252, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123252) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123252, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123252) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_02123253) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP9WNE1270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WNE1272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WNE1MF_02123265 .
?templateMotifSequenceMatchRegionP9WNE1270 faldo:begin ?templateMotifSequenceMatchBeginP9WNE1271 .
?templateMotifSequenceMatchBeginP9WNE1271 faldo:position ?templateMotifSequenceMatchBeginPositionP9WNE1266 ;
faldo:reference isoform:P9WNE1-1 .
?templateMotifSequenceProfileAlignmentOperationP9WNE1272 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02123276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WNE1MF_02123267 .
?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02123275 .
?targetMotifMatchRegionMatchBeginMF_02123275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02123268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02123276 edam:has_input signature:MF_02123 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WNE1MF_02123265, 1, (STRLEN(?templateMotifCigarP9WNE1MF_02123265) - STRLEN(REPLACE(?templateMotifCigarP9WNE1MF_02123265, CONCAT('^(?:-*[^-]){', STR(((283 - ?templateMotifSequenceMatchBeginPositionP9WNE1266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123267, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123267) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WNE1MF_02123267, 1, (STRLEN(?targetMotifMatchCigarP9WNE1MF_02123267) - STRLEN(REPLACE(?targetMotifMatchCigarP9WNE1MF_02123267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_02123268) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02123a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1763 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1763 .
})) .
BIND(?this AS ?case7) .
}
}
"xsd:string |
