| http://purl.uniprot.org/unirules/MF_02201#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:759350 up:source unirule:MF_02201 .
_:759351 up:source unirule:MF_02201 .
_:759352 up:source unirule:MF_02201 .
_:759353 up:source unirule:MF_02201 .
_:759354 up:source unirule:MF_02201 .
_:759355 up:source unirule:MF_02201 .
_:759356 up:source unirule:MF_02201 .
_:759357 up:source unirule:MF_02201 .
_:759358 up:source unirule:MF_02201 .
_:759359 up:source unirule:MF_02201 .
_:759360 up:source unirule:MF_02201 .
_:759361 up:source unirule:MF_02201 .
_:759362 up:source unirule:MF_02201 .
_:759363 up:source unirule:MF_02201 .
_:759364 up:source unirule:MF_02201 .
_:759365 up:source unirule:MF_02201 .
_:759366 up:source unirule:MF_02201 .
_:759367 up:source unirule:MF_02201 .
_:759368 up:source unirule:MF_02201 .
_:759369 up:source unirule:MF_02201 .
_:759370 up:source unirule:MF_02201 .
_:759371 up:source unirule:MF_02201 .
_:759372 up:source unirule:MF_02201 .
_:759373 up:source unirule:MF_02201 .
_:759374 up:source unirule:MF_02201 .
_:759375 up:source unirule:MF_02201 .
_:759376 up:source unirule:MF_02201 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0005737 ,
GO:0051539 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 ,
keyword:677 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Ferredoxin-type protein NapF' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'napF' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm.' .
?annotation3 up:cofactor chebi:49883 ;
rdf:type up:Cofactor_Annotation .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with the cytoplasmic NapA precursor.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NapF family.' .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:49883 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:49883 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:49883 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:49883 .
?pfs33 up:annotation ?annotation34 ,
?annotation40 ,
?annotation46 ,
?annotation52 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:49883 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:49883 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:49883 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:49883 .
?pfs58 up:annotation ?annotation59 ,
?annotation65 ,
?annotation71 ,
?annotation77 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:49883 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:49883 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:49883 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:49883 .
_:759377 a rdf:Statement ;
up:attribution _:759350 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:759378 a rdf:Statement ;
up:attribution _:759351 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:759379 a rdf:Statement ;
up:attribution _:759352 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:759380 a rdf:Statement ;
up:attribution _:759353 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:759381 a rdf:Statement ;
up:attribution _:759354 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:759382 a rdf:Statement ;
up:attribution _:759355 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:759383 a rdf:Statement ;
up:attribution _:759356 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:759384 a rdf:Statement ;
up:attribution _:759357 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:759385 a rdf:Statement ;
up:attribution _:759358 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:759386 a rdf:Statement ;
up:attribution _:759359 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:759387 a rdf:Statement ;
up:attribution _:759360 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:759388 a rdf:Statement ;
up:attribution _:759361 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:759389 a rdf:Statement ;
up:attribution _:759362 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:759390 a rdf:Statement ;
up:attribution _:759363 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
_:759391 a rdf:Statement ;
up:attribution _:759364 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:759392 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:759393 a rdf:Statement ;
up:attribution _:759365 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:759394 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:759395 a rdf:Statement ;
up:attribution _:759366 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:759396 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:759397 a rdf:Statement ;
up:attribution _:759367 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:759398 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:759399 a rdf:Statement ;
up:attribution _:759368 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:759400 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:759401 a rdf:Statement ;
up:attribution _:759369 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:759402 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:759403 a rdf:Statement ;
up:attribution _:759370 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:759404 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:759405 a rdf:Statement ;
up:attribution _:759371 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:759406 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:759407 a rdf:Statement ;
up:attribution _:759372 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:759408 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:759409 a rdf:Statement ;
up:attribution _:759373 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:759410 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:759411 a rdf:Statement ;
up:attribution _:759374 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:759412 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:759413 a rdf:Statement ;
up:attribution _:759375 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:759414 a rdf:Statement ;
up:source unirule:MF_02201 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:759415 a rdf:Statement ;
up:attribution _:759376 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02201
#Rule MF_02201 Created by:? on:2017-11-29 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02201 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_02201a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02201a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02201a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02201a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02201a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02201a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP0AAL088 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AAL090 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AAL0MF_0220183 .
?templateMotifSequenceMatchRegionP0AAL088 faldo:begin ?templateMotifSequenceMatchBeginP0AAL089 .
?templateMotifSequenceMatchBeginP0AAL089 faldo:position ?templateMotifSequenceMatchBeginPositionP0AAL084 ;
faldo:reference isoform:P0AAL0-1 .
?templateMotifSequenceProfileAlignmentOperationP0AAL090 edam:has_input signature:MF_02201 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0220194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AAL0MF_0220185 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0220193 .
?targetMotifMatchRegionMatchBeginMF_0220193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0220186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0220194 edam:has_input signature:MF_02201 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_0220183, 1, (STRLEN(?templateMotifCigarP0AAL0MF_0220183) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_0220183, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP0AAL084) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_0220185, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_0220185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_0220185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_0220185, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_0220185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_0220185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0220186) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_0220183, 1, (STRLEN(?templateMotifCigarP0AAL0MF_0220183) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_0220183, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP0AAL084) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_0220185, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_0220185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_0220185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_0220185, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_0220185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_0220185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0220186) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_0220183, 1, (STRLEN(?templateMotifCigarP0AAL0MF_0220183) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_0220183, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP0AAL084) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_0220185, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_0220185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_0220185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_0220185, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_0220185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_0220185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0220186) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_0220183, 1, (STRLEN(?templateMotifCigarP0AAL0MF_0220183) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_0220183, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP0AAL084) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_0220185, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_0220185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_0220185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_0220185, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_0220185) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_0220185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) .
BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0220186) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionP0AAL0112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AAL0114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AAL0MF_02201107 .
?templateMotifSequenceMatchRegionP0AAL0112 faldo:begin ?templateMotifSequenceMatchBeginP0AAL0113 .
?templateMotifSequenceMatchBeginP0AAL0113 faldo:position ?templateMotifSequenceMatchBeginPositionP0AAL0108 ;
faldo:reference isoform:P0AAL0-1 .
?templateMotifSequenceProfileAlignmentOperationP0AAL0114 edam:has_input signature:MF_02201 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02201118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AAL0MF_02201109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02201117 .
?targetMotifMatchRegionMatchBeginMF_02201117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02201110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02201118 edam:has_input signature:MF_02201 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_02201107, 1, (STRLEN(?templateMotifCigarP0AAL0MF_02201107) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_02201107, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP0AAL0108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201109, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201109) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201109, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201109) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_02201110) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_02201107, 1, (STRLEN(?templateMotifCigarP0AAL0MF_02201107) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_02201107, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP0AAL0108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201109, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201109) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201109, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201109) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_02201110) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_02201107, 1, (STRLEN(?templateMotifCigarP0AAL0MF_02201107) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_02201107, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionP0AAL0108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201109, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201109) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201109, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201109) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_02201110) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_02201107, 1, (STRLEN(?templateMotifCigarP0AAL0MF_02201107) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_02201107, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionP0AAL0108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201109, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201109) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201109, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201109) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_02201110) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs2t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'C')) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP0AAL0136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AAL0138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AAL0MF_02201131 .
?templateMotifSequenceMatchRegionP0AAL0136 faldo:begin ?templateMotifSequenceMatchBeginP0AAL0137 .
?templateMotifSequenceMatchBeginP0AAL0137 faldo:position ?templateMotifSequenceMatchBeginPositionP0AAL0132 ;
faldo:reference isoform:P0AAL0-1 .
?templateMotifSequenceProfileAlignmentOperationP0AAL0138 edam:has_input signature:MF_02201 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02201142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AAL0MF_02201133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02201141 .
?targetMotifMatchRegionMatchBeginMF_02201141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02201134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02201142 edam:has_input signature:MF_02201 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_02201131, 1, (STRLEN(?templateMotifCigarP0AAL0MF_02201131) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_02201131, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionP0AAL0132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201133, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201133) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201133, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201133) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_02201134) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs3t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_02201131, 1, (STRLEN(?templateMotifCigarP0AAL0MF_02201131) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_02201131, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP0AAL0132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201133, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201133) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201133, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201133) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_02201134) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs3t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_02201131, 1, (STRLEN(?templateMotifCigarP0AAL0MF_02201131) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_02201131, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP0AAL0132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201133, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201133) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201133, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201133) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_02201134) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs3t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AAL0MF_02201131, 1, (STRLEN(?templateMotifCigarP0AAL0MF_02201131) - STRLEN(REPLACE(?templateMotifCigarP0AAL0MF_02201131, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionP0AAL0132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201133, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201133) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AAL0MF_02201133, 1, (STRLEN(?targetMotifMatchCigarP0AAL0MF_02201133) - STRLEN(REPLACE(?targetMotifMatchCigarP0AAL0MF_02201133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_02201134) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs3t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'C')) .
BIND(?this AS ?pfs58) .
}
}
"xsd:string |
