| http://purl.uniprot.org/unirules/MF_02218#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:765657 up:source unirule:MF_02218 .
_:765658 up:source unirule:MF_02218 .
_:765659 up:source unirule:MF_02218 .
_:765660 up:source unirule:MF_02218 .
_:765661 up:source unirule:MF_02218 .
_:765662 up:source unirule:MF_02218 .
_:765663 up:source unirule:MF_02218 .
_:765664 up:source unirule:MF_02218 .
_:765665 up:source unirule:MF_02218 .
_:765666 up:source unirule:MF_02218 .
_:765667 up:source unirule:MF_02218 .
_:765668 up:source unirule:MF_02218 .
_:765669 up:source unirule:MF_02218 .
_:765670 up:source unirule:MF_02218 .
_:765671 up:source unirule:MF_02218 .
_:765672 up:source unirule:MF_02218 .
_:765673 up:source unirule:MF_02218 .
_:765674 up:source unirule:MF_02218 .
_:765675 up:source unirule:MF_02218 .
_:765676 up:source unirule:MF_02218 .
_:765677 up:source unirule:MF_02218 .
_:765678 up:source unirule:MF_02218 .
_:765679 up:source unirule:MF_02218 .
_:765680 up:source unirule:MF_02218 .
_:765681 up:source unirule:MF_02218 .
_:765682 up:source unirule:MF_02218 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0000287 ,
GO:0005975 ,
GO:0047931 ,
keyword:119 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.8' ;
up:fullName 'Glucosamine kinase' ;
up:shortName 'GlcN kinase' ,
'GlcNK' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the ATP-dependent phosphorylation of D-glucosamine (GlcN) to D-glucosamine 6-phosphate. May be involved in the phosphorylation of acquired extracellular GlcN derived from the hydrolysis of chitosan, i.e., in the incorporation of exogenous GlcN into the bacterial GlcNAc metabolism.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 Mg(2+) ions per subunit' .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the actinobacterial glucosamine kinase family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:30616 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Substrate specificity determinant motif' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:18420 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:18420 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:18420 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:18420 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:30616 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:30616 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:58723 .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf chebi:58723 .
_:765683 a rdf:Statement ;
up:attribution _:765657 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:765684 a rdf:Statement ;
up:attribution _:765658 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:765685 a rdf:Statement ;
up:attribution _:765659 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:765686 a rdf:Statement ;
up:attribution _:765660 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:765687 a rdf:Statement ;
up:attribution _:765661 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:765688 a rdf:Statement ;
up:attribution _:765662 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:765689 a rdf:Statement ;
up:attribution _:765663 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:765690 a rdf:Statement ;
up:attribution _:765664 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:765691 a rdf:Statement ;
up:attribution _:765665 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:765692 a rdf:Statement ;
up:attribution _:765666 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:765693 a rdf:Statement ;
up:attribution _:765667 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:765694 a rdf:Statement ;
up:attribution _:765668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:765695 a rdf:Statement ;
up:attribution _:765669 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:765696 a rdf:Statement ;
up:attribution _:765670 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0047931 .
_:765697 a rdf:Statement ;
up:attribution _:765671 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:765698 a rdf:Statement ;
up:attribution _:765672 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005975 .
_:765699 a rdf:Statement ;
up:source unirule:MF_02218 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:765700 a rdf:Statement ;
up:attribution _:765673 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:765701 a rdf:Statement ;
up:source unirule:MF_02218 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:765702 a rdf:Statement ;
up:attribution _:765674 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:765703 a rdf:Statement ;
up:source unirule:MF_02218 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:765704 a rdf:Statement ;
up:attribution _:765675 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:765705 a rdf:Statement ;
up:source unirule:MF_02218 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:765706 a rdf:Statement ;
up:attribution _:765676 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:765707 a rdf:Statement ;
up:source unirule:MF_02218 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:765708 a rdf:Statement ;
up:attribution _:765677 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:765709 a rdf:Statement ;
up:source unirule:MF_02218 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:765710 a rdf:Statement ;
up:attribution _:765678 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:765711 a rdf:Statement ;
up:source unirule:MF_02218 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:765712 a rdf:Statement ;
up:attribution _:765679 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:765713 a rdf:Statement ;
up:source unirule:MF_02218 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:765714 a rdf:Statement ;
up:attribution _:765680 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:765715 a rdf:Statement ;
up:source unirule:MF_02218 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:765716 a rdf:Statement ;
up:attribution _:765681 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:765717 a rdf:Statement ;
up:source unirule:MF_02218 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:765718 a rdf:Statement ;
up:attribution _:765682 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02218
#Rule MF_02218 Created by:? on:2019-06-14 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02218 .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(URI(CONCAT(STR(?this), '#MF_02218a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionA0A1H7TQR581 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR583 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A1H7TQR5MF_0221876 .
?templateMotifSequenceMatchRegionA0A1H7TQR581 faldo:begin ?templateMotifSequenceMatchBeginA0A1H7TQR582 .
?templateMotifSequenceMatchBeginA0A1H7TQR582 faldo:position ?templateMotifSequenceMatchBeginPositionA0A1H7TQR577 ;
faldo:reference isoform:A0A1H7TQR5-1 .
?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR583 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0221887 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A1H7TQR5MF_0221878 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0221886 .
?targetMotifMatchRegionMatchBeginMF_0221886 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0221879 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0221887 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_0221876, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_0221876) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_0221876, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR577) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_0221878, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_0221878) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_0221878, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_0221878, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_0221878) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_0221878, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0221879) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_0221876, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_0221876) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_0221876, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR577) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_0221878, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_0221878) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_0221878, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_0221878, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_0221878) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_0221878, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0221879) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('[AGST][ARNDCQEGHILKMFPSTWYVBZJUOX][LIV]', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionA0A1H7TQR598 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A1H7TQR5MF_0221893 .
?templateMotifSequenceMatchRegionA0A1H7TQR598 faldo:begin ?templateMotifSequenceMatchBeginA0A1H7TQR599 .
?templateMotifSequenceMatchBeginA0A1H7TQR599 faldo:position ?templateMotifSequenceMatchBeginPositionA0A1H7TQR594 ;
faldo:reference isoform:A0A1H7TQR5-1 .
?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5100 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02218104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A1H7TQR5MF_0221895 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02218103 .
?targetMotifMatchRegionMatchBeginMF_02218103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0221896 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02218104 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_0221893, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_0221893) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_0221893, CONCAT('^(?:-*[^-]){', STR(((405 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR594) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_0221895, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_0221895) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_0221895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_0221895, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_0221895) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_0221895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0221896) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_0221893, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_0221893) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_0221893, CONCAT('^(?:-*[^-]){', STR(((420 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR594) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_0221895, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_0221895) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_0221895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_0221895, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_0221895) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_0221895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0221896) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER (REGEX('Q[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)RE[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)YA[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)LP[ARNDCQEGHILKMFPSTWYVBZJUOX]W', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionA0A1H7TQR5115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A1H7TQR5MF_02218110 .
?templateMotifSequenceMatchRegionA0A1H7TQR5115 faldo:begin ?templateMotifSequenceMatchBeginA0A1H7TQR5116 .
?templateMotifSequenceMatchBeginA0A1H7TQR5116 faldo:position ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5111 ;
faldo:reference isoform:A0A1H7TQR5-1 .
?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5117 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02218121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A1H7TQR5MF_02218112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02218120 .
?targetMotifMatchRegionMatchBeginMF_02218120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02218113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02218121 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_02218110, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_02218110) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_02218110, CONCAT('^(?:-*[^-]){', STR(((305 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218112, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218112) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218112, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218112) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_02218113) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionA0A1H7TQR5130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A1H7TQR5MF_02218125 .
?templateMotifSequenceMatchRegionA0A1H7TQR5130 faldo:begin ?templateMotifSequenceMatchBeginA0A1H7TQR5131 .
?templateMotifSequenceMatchBeginA0A1H7TQR5131 faldo:position ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5126 ;
faldo:reference isoform:A0A1H7TQR5-1 .
?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5132 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02218136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A1H7TQR5MF_02218127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02218135 .
?targetMotifMatchRegionMatchBeginMF_02218135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02218128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02218136 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_02218125, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_02218125) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_02218125, CONCAT('^(?:-*[^-]){', STR(((317 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218127, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218127) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218127, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218127) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_02218128) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionA0A1H7TQR5145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A1H7TQR5MF_02218140 .
?templateMotifSequenceMatchRegionA0A1H7TQR5145 faldo:begin ?templateMotifSequenceMatchBeginA0A1H7TQR5146 .
?templateMotifSequenceMatchBeginA0A1H7TQR5146 faldo:position ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5141 ;
faldo:reference isoform:A0A1H7TQR5-1 .
?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5147 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02218151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A1H7TQR5MF_02218142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02218150 .
?targetMotifMatchRegionMatchBeginMF_02218150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02218143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02218151 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_02218140, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_02218140) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_02218140, CONCAT('^(?:-*[^-]){', STR(((317 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218142, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218142) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218142, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218142) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_02218143) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionA0A1H7TQR5160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A1H7TQR5MF_02218155 .
?templateMotifSequenceMatchRegionA0A1H7TQR5160 faldo:begin ?templateMotifSequenceMatchBeginA0A1H7TQR5161 .
?templateMotifSequenceMatchBeginA0A1H7TQR5161 faldo:position ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5156 ;
faldo:reference isoform:A0A1H7TQR5-1 .
?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5162 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02218166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A1H7TQR5MF_02218157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02218165 .
?targetMotifMatchRegionMatchBeginMF_02218165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02218158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02218166 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_02218155, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_02218155) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_02218155, CONCAT('^(?:-*[^-]){', STR(((319 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218157, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218157) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218157, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218157) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_02218158) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionA0A1H7TQR5175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A1H7TQR5MF_02218170 .
?templateMotifSequenceMatchRegionA0A1H7TQR5175 faldo:begin ?templateMotifSequenceMatchBeginA0A1H7TQR5176 .
?templateMotifSequenceMatchBeginA0A1H7TQR5176 faldo:position ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5171 ;
faldo:reference isoform:A0A1H7TQR5-1 .
?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5177 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02218181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A1H7TQR5MF_02218172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02218180 .
?targetMotifMatchRegionMatchBeginMF_02218180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02218173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02218181 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_02218170, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_02218170) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_02218170, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218172, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218172) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218172, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218172) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_02218173) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch189 faldo:location ?templateMotifSequenceMatchRegionA0A1H7TQR5190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A1H7TQR5MF_02218185 .
?templateMotifSequenceMatchRegionA0A1H7TQR5190 faldo:begin ?templateMotifSequenceMatchBeginA0A1H7TQR5191 .
?templateMotifSequenceMatchBeginA0A1H7TQR5191 faldo:position ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5186 ;
faldo:reference isoform:A0A1H7TQR5-1 .
?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5192 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch193 faldo:location ?targetMotifMatchRegionMatch194 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02218196 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A1H7TQR5MF_02218187 .
?targetMotifMatchRegionMatch194 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02218195 .
?targetMotifMatchRegionMatchBeginMF_02218195 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02218188 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02218196 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_02218185, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_02218185) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_02218185, CONCAT('^(?:-*[^-]){', STR(((193 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218187, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218187) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218187, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218187) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_02218188) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionA0A1H7TQR5205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A1H7TQR5MF_02218200 .
?templateMotifSequenceMatchRegionA0A1H7TQR5205 faldo:begin ?templateMotifSequenceMatchBeginA0A1H7TQR5206 .
?templateMotifSequenceMatchBeginA0A1H7TQR5206 faldo:position ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5201 ;
faldo:reference isoform:A0A1H7TQR5-1 .
?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5207 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02218211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A1H7TQR5MF_02218202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02218210 .
?targetMotifMatchRegionMatchBeginMF_02218210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02218203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02218211 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_02218200, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_02218200) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_02218200, CONCAT('^(?:-*[^-]){', STR(((300 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218202, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218202) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218202, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218202) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_02218203) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t214) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionA0A1H7TQR5220 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5222 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A1H7TQR5MF_02218215 .
?templateMotifSequenceMatchRegionA0A1H7TQR5220 faldo:begin ?templateMotifSequenceMatchBeginA0A1H7TQR5221 .
?templateMotifSequenceMatchBeginA0A1H7TQR5221 faldo:position ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5216 ;
faldo:reference isoform:A0A1H7TQR5-1 .
?templateMotifSequenceProfileAlignmentOperationA0A1H7TQR5222 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02218226 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A1H7TQR5MF_02218217 .
?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02218225 .
?targetMotifMatchRegionMatchBeginMF_02218225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02218218 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02218226 edam:has_input signature:MF_02218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A1H7TQR5MF_02218215, 1, (STRLEN(?templateMotifCigarA0A1H7TQR5MF_02218215) - STRLEN(REPLACE(?templateMotifCigarA0A1H7TQR5MF_02218215, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionA0A1H7TQR5216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218217, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218217) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A1H7TQR5MF_02218217, 1, (STRLEN(?targetMotifMatchCigarA0A1H7TQR5MF_02218217) - STRLEN(REPLACE(?targetMotifMatchCigarA0A1H7TQR5MF_02218217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) .
BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_02218218) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t229) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02218a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
}
"xsd:string |
