| http://purl.uniprot.org/unirules/MF_02234#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:772153 up:source unirule:MF_02234 .
_:772154 up:source unirule:MF_02234 .
_:772155 up:source unirule:MF_02234 .
_:772156 up:source unirule:MF_02234 .
_:772157 up:source unirule:MF_02234 .
_:772158 up:source unirule:MF_02234 .
_:772159 up:source unirule:MF_02234 .
_:772160 up:source unirule:MF_02234 .
_:772161 up:source unirule:MF_02234 .
_:772162 up:source unirule:MF_02234 .
_:772163 up:source unirule:MF_02234 .
_:772164 up:source unirule:MF_02234 .
_:772165 up:source unirule:MF_02234 .
_:772166 up:source unirule:MF_02234 .
_:772167 up:source unirule:MF_02234 .
_:772168 up:source unirule:MF_02234 .
_:772169 up:source unirule:MF_02234 .
_:772170 up:source unirule:MF_02234 .
_:772171 up:source unirule:MF_02234 .
_:772172 up:source unirule:MF_02234 .
_:772173 up:source unirule:MF_02234 .
_:772174 up:source unirule:MF_02234 .
_:772175 up:source unirule:MF_02234 .
_:772176 up:source unirule:MF_02234 .
_:772177 up:source unirule:MF_02234 .
_:772178 up:source unirule:MF_02234 .
_:772179 up:source unirule:MF_02234 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0005737 ,
GO:0006526 ,
GO:0043857 ,
keyword:28 ,
keyword:55 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.3.9' ;
up:fullName 'N-acetylornithine carbamoyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N-acetyl-L-ornithine transcarbamylase' ;
up:shortName 'AOTCase' ,
'Acetylornithine transcarbamylase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel "argF'" .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the transfer of the carbamoyl group from carbamoyl phosphate to the delta-amino group of N(2)-acetyl-L-ornithine to produce N(2)-acetyl-L-citrulline. This is a step in an alternative arginine biosynthesis pathway.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aspartate/ornithine carbamoyltransferase superfamily. AOTCase family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:58228 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:58228 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:58228 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:58228 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:58228 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:57805 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:57805 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:57805 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:58228 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Key residue in conferring substrate specificity for N-acetyl-L-ornithine versus N-succinyl-L-ornithine' .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-carboxylysine' .
?pfsb82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
_:772180 a rdf:Statement ;
up:attribution _:772153 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:772181 a rdf:Statement ;
up:attribution _:772154 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:772182 a rdf:Statement ;
up:attribution _:772155 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:772183 a rdf:Statement ;
up:attribution _:772156 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:772184 a rdf:Statement ;
up:attribution _:772157 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:772185 a rdf:Statement ;
up:attribution _:772158 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:772186 a rdf:Statement ;
up:attribution _:772159 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:772187 a rdf:Statement ;
up:attribution _:772160 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:772188 a rdf:Statement ;
up:attribution _:772161 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:772189 a rdf:Statement ;
up:attribution _:772162 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:772190 a rdf:Statement ;
up:attribution _:772163 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:772191 a rdf:Statement ;
up:attribution _:772164 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:772192 a rdf:Statement ;
up:attribution _:772165 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:772193 a rdf:Statement ;
up:attribution _:772166 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043857 .
_:772194 a rdf:Statement ;
up:attribution _:772167 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006526 .
_:772195 a rdf:Statement ;
up:attribution _:772168 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:772196 a rdf:Statement ;
up:source unirule:MF_02234 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:772197 a rdf:Statement ;
up:attribution _:772169 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:772198 a rdf:Statement ;
up:source unirule:MF_02234 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:772199 a rdf:Statement ;
up:attribution _:772170 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:772200 a rdf:Statement ;
up:source unirule:MF_02234 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:772201 a rdf:Statement ;
up:attribution _:772171 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:772202 a rdf:Statement ;
up:source unirule:MF_02234 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:772203 a rdf:Statement ;
up:attribution _:772172 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:772204 a rdf:Statement ;
up:source unirule:MF_02234 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:772205 a rdf:Statement ;
up:attribution _:772173 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:772206 a rdf:Statement ;
up:source unirule:MF_02234 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:772207 a rdf:Statement ;
up:attribution _:772174 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:772208 a rdf:Statement ;
up:source unirule:MF_02234 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:772209 a rdf:Statement ;
up:attribution _:772175 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:772210 a rdf:Statement ;
up:source unirule:MF_02234 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:772211 a rdf:Statement ;
up:attribution _:772176 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:772212 a rdf:Statement ;
up:source unirule:MF_02234 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:772213 a rdf:Statement ;
up:attribution _:772177 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:772214 a rdf:Statement ;
up:source unirule:MF_02234 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:772215 a rdf:Statement ;
up:attribution _:772178 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:772216 a rdf:Statement ;
up:source unirule:MF_02234 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:772217 a rdf:Statement ;
up:attribution _:772179 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02234
#Rule MF_02234 Created by:? on:2019-10-15 Modified by:Catherine Rivoire on:2024-11-05
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02234 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02234a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionQ8P8J291 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J293 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J2MF_0223486 .
?templateMotifSequenceMatchRegionQ8P8J291 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J292 .
?templateMotifSequenceMatchBeginQ8P8J292 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J287 ;
faldo:reference isoform:Q8P8J2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J293 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0223497 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J2MF_0223488 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0223496 .
?targetMotifMatchRegionMatchBeginMF_0223496 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223489 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0223497 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_0223486, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_0223486) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_0223486, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionQ8P8J287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_0223488, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_0223488) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_0223488, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_0223488, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_0223488) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_0223488, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0223489) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_0223486, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_0223486) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_0223486, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionQ8P8J287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_0223488, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_0223488) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_0223488, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_0223488, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_0223488) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_0223488, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0223489) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]RT', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J2MF_02234103 .
?templateMotifSequenceMatchRegionQ8P8J2108 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2109 .
?templateMotifSequenceMatchBeginQ8P8J2109 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2104 ;
faldo:reference isoform:Q8P8J2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J2110 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234113 .
?targetMotifMatchRegionMatchBeginMF_02234113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02234114 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234103, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234103) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234103, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionQ8P8J2104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234105, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234105) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234105, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234105) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_02234106) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234103, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234103) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234103, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionQ8P8J2104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234105, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234105) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234105, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234105) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_02234106) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)) = 'HPCQ')) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J2MF_02234120 .
?templateMotifSequenceMatchRegionQ8P8J2125 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2126 .
?templateMotifSequenceMatchBeginQ8P8J2126 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2121 ;
faldo:reference isoform:Q8P8J2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J2127 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234130 .
?targetMotifMatchRegionMatchBeginMF_02234130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02234131 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234120, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234120) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234120, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionQ8P8J2121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234122, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234122) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234122, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234122) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_02234123) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234120, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234120) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234120, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionQ8P8J2121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234122, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234122) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234122, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234122) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_02234123) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)) = 'CL')) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J2MF_02234137 .
?templateMotifSequenceMatchRegionQ8P8J2142 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2143 .
?templateMotifSequenceMatchBeginQ8P8J2143 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2138 ;
faldo:reference isoform:Q8P8J2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J2144 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234147 .
?targetMotifMatchRegionMatchBeginMF_02234147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02234148 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234137, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234137) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234137, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionQ8P8J2138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234139, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234139) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234139, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234139) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_02234140) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J2MF_02234152 .
?templateMotifSequenceMatchRegionQ8P8J2157 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2158 .
?templateMotifSequenceMatchBeginQ8P8J2158 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2153 ;
faldo:reference isoform:Q8P8J2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J2159 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234162 .
?targetMotifMatchRegionMatchBeginMF_02234162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02234163 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234152, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234152) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234152, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionQ8P8J2153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234154, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234154) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234154, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234154) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_02234155) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J2MF_02234167 .
?templateMotifSequenceMatchRegionQ8P8J2172 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2173 .
?templateMotifSequenceMatchBeginQ8P8J2173 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2168 ;
faldo:reference isoform:Q8P8J2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J2174 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234177 .
?targetMotifMatchRegionMatchBeginMF_02234177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02234178 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234167, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234167) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234167, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionQ8P8J2168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234169, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234169) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234169, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234169) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_02234170) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t181) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J2MF_02234182 .
?templateMotifSequenceMatchRegionQ8P8J2187 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2188 .
?templateMotifSequenceMatchBeginQ8P8J2188 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2183 ;
faldo:reference isoform:Q8P8J2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J2189 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234192 .
?targetMotifMatchRegionMatchBeginMF_02234192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02234193 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234182, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234182) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234182, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionQ8P8J2183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234184, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234184) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234184, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234184) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_02234185) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2202 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2204 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J2MF_02234197 .
?templateMotifSequenceMatchRegionQ8P8J2202 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2203 .
?templateMotifSequenceMatchBeginQ8P8J2203 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2198 ;
faldo:reference isoform:Q8P8J2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J2204 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234208 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234199 .
?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234207 .
?targetMotifMatchRegionMatchBeginMF_02234207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234200 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02234208 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234197, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234197) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234197, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionQ8P8J2198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234199, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234199) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234199, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234199) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_02234200) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'L')) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2217 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2219 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J2MF_02234212 .
?templateMotifSequenceMatchRegionQ8P8J2217 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2218 .
?templateMotifSequenceMatchBeginQ8P8J2218 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2213 ;
faldo:reference isoform:Q8P8J2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J2219 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234223 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234214 .
?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234222 .
?targetMotifMatchRegionMatchBeginMF_02234222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234215 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02234223 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234212, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234212) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234212, CONCAT('^(?:-*[^-]){', STR(((322 - ?templateMotifSequenceMatchBeginPositionQ8P8J2213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234214, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234214) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234214, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234214) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_02234215) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2232 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2234 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J2MF_02234227 .
?templateMotifSequenceMatchRegionQ8P8J2232 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2233 .
?templateMotifSequenceMatchBeginQ8P8J2233 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2228 ;
faldo:reference isoform:Q8P8J2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J2234 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234238 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234229 .
?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234237 .
?targetMotifMatchRegionMatchBeginMF_02234237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234230 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02234238 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234227, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234227) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234227, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionQ8P8J2228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234229, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234229) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234229, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234229) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) .
BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_02234230) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t241) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch246 faldo:location ?templateMotifSequenceMatchRegionQ8P8J2247 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8P8J2249 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8P8J2MF_02234242 .
?templateMotifSequenceMatchRegionQ8P8J2247 faldo:begin ?templateMotifSequenceMatchBeginQ8P8J2248 .
?templateMotifSequenceMatchBeginQ8P8J2248 faldo:position ?templateMotifSequenceMatchBeginPositionQ8P8J2243 ;
faldo:reference isoform:Q8P8J2-1 .
?templateMotifSequenceProfileAlignmentOperationQ8P8J2249 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
?targetMotifMatch250 faldo:location ?targetMotifMatchRegionMatch251 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02234253 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8P8J2MF_02234244 .
?targetMotifMatchRegionMatch251 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02234252 .
?targetMotifMatchRegionMatchBeginMF_02234252 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02234245 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02234253 edam:has_input signature:MF_02234 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8P8J2MF_02234242, 1, (STRLEN(?templateMotifCigarQ8P8J2MF_02234242) - STRLEN(REPLACE(?templateMotifCigarQ8P8J2MF_02234242, CONCAT('^(?:-*[^-]){', STR(((302 - ?templateMotifSequenceMatchBeginPositionQ8P8J2243) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1254) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234244, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234244) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8P8J2MF_02234244, 1, (STRLEN(?targetMotifMatchCigarQ8P8J2MF_02234244) - STRLEN(REPLACE(?targetMotifMatchCigarQ8P8J2MF_02234244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), '')))), '[^-]', ''))) AS ?step2255) .
BIND(((?step2255 + ?targetMotifMatchRegionMatchBeginPositionMF_02234245) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t256) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02234a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
}
"xsd:string |
