| http://purl.uniprot.org/unirules/MF_03001#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:780193 up:source unirule:MF_03001 .
_:780194 up:source unirule:MF_03001 .
_:780195 up:source unirule:MF_03001 .
_:780196 up:source unirule:MF_03001 .
_:780197 up:source unirule:MF_03001 .
_:780198 up:source unirule:MF_03001 .
_:780199 up:source unirule:MF_03001 .
_:780200 up:source unirule:MF_03001 .
_:780201 up:source unirule:MF_03001 .
_:780202 up:source unirule:MF_03001 .
_:780203 up:source unirule:MF_03001 .
_:780204 up:source unirule:MF_03001 .
_:780205 up:source unirule:MF_03001 .
_:780206 up:source unirule:MF_03001 .
_:780207 up:source unirule:MF_03001 .
_:780208 up:source unirule:MF_03001 .
_:780209 up:source unirule:MF_03001 .
_:780210 up:source unirule:MF_03001 .
_:780211 up:source unirule:MF_03001 .
_:780212 up:source unirule:MF_03001 .
_:780213 up:source unirule:MF_03001 .
_:780214 up:source unirule:MF_03001 .
_:780215 up:source unirule:MF_03001 .
_:780216 up:source unirule:MF_03001 .
_:780217 up:source unirule:MF_03001 .
_:780218 up:source unirule:MF_03001 .
_:780219 up:source unirule:MF_03001 .
_:780220 up:source unirule:MF_03001 .
?this up:annotation ?annotation0 ,
?annotation2 ;
up:classifiedWith GO:0001732 ,
GO:0002183 ,
GO:0003723 ,
GO:0003743 ,
GO:0005737 ,
GO:0005852 ,
GO:0016282 ,
GO:0033290 ,
keyword:396 ,
keyword:648 ,
keyword:694 ,
keyword:963 .
?annotation0 a up:Subcellular_Location_Annotation .
?annotation0li1 up:cellularComponent .
?annotation2 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the eIF-3 subunit B family.' .
?case3 up:classifiedWith keyword:7 .
?case5 up:classifiedWith keyword:597 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N-acetylmethionine' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Sufficient for interaction with HCR1 and TIF32' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Sufficient for interaction with PIC8' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Sufficient for interaction with EIF3E' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Sufficient for interaction with EIF3J' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
_:780221 a rdf:Statement ;
up:attribution _:780193 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:780222 a rdf:Statement ;
up:attribution _:780194 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:780223 a rdf:Statement ;
up:attribution _:780195 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:780224 a rdf:Statement ;
up:attribution _:780196 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:396 .
_:780225 a rdf:Statement ;
up:attribution _:780197 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:780226 a rdf:Statement ;
up:attribution _:780198 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:780227 a rdf:Statement ;
up:attribution _:780199 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:780228 a rdf:Statement ;
up:attribution _:780200 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003743 .
_:780229 a rdf:Statement ;
up:attribution _:780201 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001732 .
_:780230 a rdf:Statement ;
up:attribution _:780202 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002183 .
_:780231 a rdf:Statement ;
up:attribution _:780203 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:780232 a rdf:Statement ;
up:attribution _:780204 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005852 .
_:780233 a rdf:Statement ;
up:attribution _:780205 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016282 .
_:780234 a rdf:Statement ;
up:attribution _:780206 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033290 .
_:780235 a rdf:Statement ;
up:attribution _:780207 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:780236 a rdf:Statement ;
up:attribution _:780208 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:780237 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:780238 a rdf:Statement ;
up:attribution _:780209 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:780239 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:780240 a rdf:Statement ;
up:attribution _:780210 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:780241 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:780242 a rdf:Statement ;
up:attribution _:780211 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:780243 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:780244 a rdf:Statement ;
up:attribution _:780212 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:780245 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:780246 a rdf:Statement ;
up:attribution _:780213 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:780247 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:780248 a rdf:Statement ;
up:attribution _:780214 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:780249 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:780250 a rdf:Statement ;
up:attribution _:780215 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:780251 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:780252 a rdf:Statement ;
up:attribution _:780216 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:780253 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:780254 a rdf:Statement ;
up:attribution _:780217 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:780255 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:780256 a rdf:Statement ;
up:attribution _:780218 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:780257 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:780258 a rdf:Statement ;
up:attribution _:780219 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:780259 a rdf:Statement ;
up:source unirule:MF_03001 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:780260 a rdf:Statement ;
up:attribution _:780220 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03001
#Rule MF_03001 Created by:? on:2009-01-29 Modified by:ipedruzz on:2021-03-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03001 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03001a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a2')) AS ?annotation2) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP5588491 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5588493 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55884MF_0300186 .
?templateMotifSequenceMatchRegionP5588491 faldo:begin ?templateMotifSequenceMatchBeginP5588492 .
?templateMotifSequenceMatchBeginP5588492 faldo:position ?templateMotifSequenceMatchBeginPositionP5588487 ;
faldo:reference isoform:P55884-1 .
?templateMotifSequenceProfileAlignmentOperationP5588493 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300197 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55884MF_0300188 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300196 .
?targetMotifMatchRegionMatchBeginMF_0300196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300189 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0300197 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacetyl) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_0300186, 1, (STRLEN(?templateMotifCigarP55884MF_0300186) - STRLEN(REPLACE(?templateMotifCigarP55884MF_0300186, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP5588487) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_0300188, 1, (STRLEN(?targetMotifMatchCigarP55884MF_0300188) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_0300188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_0300188, 1, (STRLEN(?targetMotifMatchCigarP55884MF_0300188) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_0300188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0300189) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP06103106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06103108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06103MF_03001101 .
?templateMotifSequenceMatchRegionP06103106 faldo:begin ?templateMotifSequenceMatchBeginP06103107 .
?templateMotifSequenceMatchBeginP06103107 faldo:position ?templateMotifSequenceMatchBeginPositionP06103102 ;
faldo:reference isoform:P06103-1 .
?templateMotifSequenceProfileAlignmentOperationP06103108 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06103MF_03001103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001111 .
?targetMotifMatchRegionMatchBeginMF_03001111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03001112 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4891 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06103MF_03001101, 1, (STRLEN(?templateMotifCigarP06103MF_03001101) - STRLEN(REPLACE(?templateMotifCigarP06103MF_03001101, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP06103102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06103MF_03001103, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001103) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06103MF_03001103, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001103) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_03001104) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06103MF_03001101, 1, (STRLEN(?templateMotifCigarP06103MF_03001101) - STRLEN(REPLACE(?templateMotifCigarP06103MF_03001101, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP06103102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06103MF_03001103, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001103) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06103MF_03001103, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001103) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_03001104) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs2t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP06103123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06103125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06103MF_03001118 .
?templateMotifSequenceMatchRegionP06103123 faldo:begin ?templateMotifSequenceMatchBeginP06103124 .
?templateMotifSequenceMatchBeginP06103124 faldo:position ?templateMotifSequenceMatchBeginPositionP06103119 ;
faldo:reference isoform:P06103-1 .
?templateMotifSequenceProfileAlignmentOperationP06103125 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06103MF_03001120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001128 .
?targetMotifMatchRegionMatchBeginMF_03001128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03001129 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4891 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06103MF_03001118, 1, (STRLEN(?templateMotifCigarP06103MF_03001118) - STRLEN(REPLACE(?templateMotifCigarP06103MF_03001118, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionP06103119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06103MF_03001120, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001120) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06103MF_03001120, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001120) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_03001121) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06103MF_03001118, 1, (STRLEN(?templateMotifCigarP06103MF_03001118) - STRLEN(REPLACE(?templateMotifCigarP06103MF_03001118, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP06103119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06103MF_03001120, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001120) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06103MF_03001120, 1, (STRLEN(?targetMotifMatchCigarP06103MF_03001120) - STRLEN(REPLACE(?targetMotifMatchCigarP06103MF_03001120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_03001121) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs2t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP55884140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55884MF_03001135 .
?templateMotifSequenceMatchRegionP55884140 faldo:begin ?templateMotifSequenceMatchBeginP55884141 .
?templateMotifSequenceMatchBeginP55884141 faldo:position ?templateMotifSequenceMatchBeginPositionP55884136 ;
faldo:reference isoform:P55884-1 .
?templateMotifSequenceProfileAlignmentOperationP55884142 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55884MF_03001137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001145 .
?targetMotifMatchRegionMatchBeginMF_03001145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03001146 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001135, 1, (STRLEN(?templateMotifCigarP55884MF_03001135) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001135, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP55884136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001137, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001137) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001137, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001137) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_03001138) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001135, 1, (STRLEN(?templateMotifCigarP55884MF_03001135) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001135, CONCAT('^(?:-*[^-]){', STR(((413 - ?templateMotifSequenceMatchBeginPositionP55884136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001137, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001137) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001137, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001137) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_03001138) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs3t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP55884157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55884MF_03001152 .
?templateMotifSequenceMatchRegionP55884157 faldo:begin ?templateMotifSequenceMatchBeginP55884158 .
?templateMotifSequenceMatchBeginP55884158 faldo:position ?templateMotifSequenceMatchBeginPositionP55884153 ;
faldo:reference isoform:P55884-1 .
?templateMotifSequenceProfileAlignmentOperationP55884159 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55884MF_03001154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001162 .
?targetMotifMatchRegionMatchBeginMF_03001162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03001163 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001152, 1, (STRLEN(?templateMotifCigarP55884MF_03001152) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001152, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP55884153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001154, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001154) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001154, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001154) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_03001155) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001152, 1, (STRLEN(?templateMotifCigarP55884MF_03001152) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001152, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP55884153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001154, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001154) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001154, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001154) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_03001155) - 1) AS ?thisPositionOn43) .
BIND(?this AS ?pfs3t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP55884174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55884MF_03001169 .
?templateMotifSequenceMatchRegionP55884174 faldo:begin ?templateMotifSequenceMatchBeginP55884175 .
?templateMotifSequenceMatchBeginP55884175 faldo:position ?templateMotifSequenceMatchBeginPositionP55884170 ;
faldo:reference isoform:P55884-1 .
?templateMotifSequenceProfileAlignmentOperationP55884176 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55884MF_03001171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001179 .
?targetMotifMatchRegionMatchBeginMF_03001179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03001180 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001169, 1, (STRLEN(?templateMotifCigarP55884MF_03001169) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001169, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP55884170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001171, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001171) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001171, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001171) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_03001172) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs3t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP55884189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55884MF_03001184 .
?templateMotifSequenceMatchRegionP55884189 faldo:begin ?templateMotifSequenceMatchBeginP55884190 .
?templateMotifSequenceMatchBeginP55884190 faldo:position ?templateMotifSequenceMatchBeginPositionP55884185 ;
faldo:reference isoform:P55884-1 .
?templateMotifSequenceProfileAlignmentOperationP55884191 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55884MF_03001186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001194 .
?targetMotifMatchRegionMatchBeginMF_03001194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03001195 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001184, 1, (STRLEN(?templateMotifCigarP55884MF_03001184) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001184, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP55884185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001186, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001186) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001186, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001186) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_03001187) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs3t198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP55884204 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884206 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55884MF_03001199 .
?templateMotifSequenceMatchRegionP55884204 faldo:begin ?templateMotifSequenceMatchBeginP55884205 .
?templateMotifSequenceMatchBeginP55884205 faldo:position ?templateMotifSequenceMatchBeginPositionP55884200 ;
faldo:reference isoform:P55884-1 .
?templateMotifSequenceProfileAlignmentOperationP55884206 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001210 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55884MF_03001201 .
?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001209 .
?targetMotifMatchRegionMatchBeginMF_03001209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001202 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03001210 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001199, 1, (STRLEN(?templateMotifCigarP55884MF_03001199) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001199, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionP55884200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001201, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001201) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001201, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001201) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_03001202) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs3t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP55884219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55884MF_03001214 .
?templateMotifSequenceMatchRegionP55884219 faldo:begin ?templateMotifSequenceMatchBeginP55884220 .
?templateMotifSequenceMatchBeginP55884220 faldo:position ?templateMotifSequenceMatchBeginPositionP55884215 ;
faldo:reference isoform:P55884-1 .
?templateMotifSequenceProfileAlignmentOperationP55884221 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55884MF_03001216 .
?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001224 .
?targetMotifMatchRegionMatchBeginMF_03001224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03001225 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001214, 1, (STRLEN(?templateMotifCigarP55884MF_03001214) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001214, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP55884215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001216, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001216) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001216, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001216) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_03001217) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs3t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP55884234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55884MF_03001229 .
?templateMotifSequenceMatchRegionP55884234 faldo:begin ?templateMotifSequenceMatchBeginP55884235 .
?templateMotifSequenceMatchBeginP55884235 faldo:position ?templateMotifSequenceMatchBeginPositionP55884230 ;
faldo:reference isoform:P55884-1 .
?templateMotifSequenceProfileAlignmentOperationP55884236 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55884MF_03001231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001239 .
?targetMotifMatchRegionMatchBeginMF_03001239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03001240 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001229, 1, (STRLEN(?templateMotifCigarP55884MF_03001229) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001229, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP55884230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001231, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001231) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001231, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001231) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_03001232) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs3t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP55884249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55884MF_03001244 .
?templateMotifSequenceMatchRegionP55884249 faldo:begin ?templateMotifSequenceMatchBeginP55884250 .
?templateMotifSequenceMatchBeginP55884250 faldo:position ?templateMotifSequenceMatchBeginPositionP55884245 ;
faldo:reference isoform:P55884-1 .
?templateMotifSequenceProfileAlignmentOperationP55884251 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55884MF_03001246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001254 .
?targetMotifMatchRegionMatchBeginMF_03001254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03001255 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001244, 1, (STRLEN(?templateMotifCigarP55884MF_03001244) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001244, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionP55884245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001246, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001246) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001246, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001246) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_03001247) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs3t258) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP55884264 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55884266 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP55884MF_03001259 .
?templateMotifSequenceMatchRegionP55884264 faldo:begin ?templateMotifSequenceMatchBeginP55884265 .
?templateMotifSequenceMatchBeginP55884265 faldo:position ?templateMotifSequenceMatchBeginPositionP55884260 ;
faldo:reference isoform:P55884-1 .
?templateMotifSequenceProfileAlignmentOperationP55884266 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03001270 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP55884MF_03001261 .
?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03001269 .
?targetMotifMatchRegionMatchBeginMF_03001269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03001262 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03001270 edam:has_input signature:MF_03001 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55884MF_03001259, 1, (STRLEN(?templateMotifCigarP55884MF_03001259) - STRLEN(REPLACE(?templateMotifCigarP55884MF_03001259, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP55884260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55884MF_03001261, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001261) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55884MF_03001261, 1, (STRLEN(?targetMotifMatchCigarP55884MF_03001261) - STRLEN(REPLACE(?targetMotifMatchCigarP55884MF_03001261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) .
BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_03001262) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs3t273) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03001a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag274) .
}
BIND(IF(BOUND(?tagacetyl), ?caseWithTag274, ?UNBOUND_VARIABLE) AS ?case3) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7214 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon275 {taxon:7214 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon275 .
})) .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon276 {taxon:33090 taxon:4751 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon276 .
})) .
BIND(?this AS ?case13) .
}
}
"xsd:string |
