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SubjectPredicateObject
http://purl.uniprot.org/unirules/MF_03154#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_03154#construct-template-list-0
http://purl.uniprot.org/unirules/MF_03154#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:847297 up:source unirule:MF_03154 . _:847298 up:source unirule:MF_03154 . _:847299 up:source unirule:MF_03154 . _:847300 up:source unirule:MF_03154 . _:847301 up:source unirule:MF_03154 . _:847302 up:source unirule:MF_03154 . _:847303 up:source unirule:MF_03154 . _:847304 up:source unirule:MF_03154 . _:847305 up:source unirule:MF_03154 . _:847306 up:source unirule:MF_03154 . _:847307 up:source unirule:MF_03154 . _:847308 up:source unirule:MF_03154 . _:847309 up:source unirule:MF_03154 . _:847310 up:source unirule:MF_03154 . _:847311 up:source unirule:MF_03154 . _:847312 up:source unirule:MF_03154 . _:847313 up:source unirule:MF_03154 . _:847314 up:source unirule:MF_03154 . _:847315 up:source unirule:MF_03154 . _:847316 up:source unirule:MF_03154 . _:847317 up:source unirule:MF_03154 . _:847318 up:source unirule:MF_03154 . _:847319 up:source unirule:MF_03154 . _:847320 up:source unirule:MF_03154 . _:847321 up:source unirule:MF_03154 . _:847322 up:source unirule:MF_03154 . _:847323 up:source unirule:MF_03154 . _:847324 up:source unirule:MF_03154 . _:847325 up:source unirule:MF_03154 . _:847326 up:source unirule:MF_03154 . _:847327 up:source unirule:MF_03154 . ?this up:annotation ?annotation0 ; up:classifiedWith GO:0005634 , GO:0005737 , keyword:539 , keyword:963 . ?annotation0 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the acireductone dioxygenase (ARD) family.' . ?case1 up:alternativeName ?name3 , ?name4 ; up:classifiedWith GO:0005506 , GO:0010308 , GO:0010309 , GO:0016151 , GO:0019509 , keyword:223 , keyword:28 , keyword:408 , keyword:479 , keyword:486 , keyword:533 , keyword:560 ; up:recommendedName ?name2 . ?name2 up:fullName 'Acireductone dioxygenase' ; rdf:type up:Structured_Name . ?name3 up:ecName '1.13.11.54' ; up:fullName 'Acireductone dioxygenase (Fe(2+)-requiring)' ; up:shortName "ARD'" , 'Fe-ARD' ; rdf:type up:Structured_Name . ?name4 up:ecName '1.13.11.53' ; up:fullName 'Acireductone dioxygenase (Ni(2+)-requiring)' ; up:shortName 'ARD' , 'Ni-ARD' ; rdf:type up:Structured_Name . ?case7 up:classifiedWith keyword:1003 , keyword:472 . ?pfs13 up:annotation ?annotation14 , ?annotation20 , ?annotation26 , ?annotation32 , ?annotation38 , ?annotation44 , ?annotation50 , ?annotation56 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:29033 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:49786 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf chebi:29033 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf chebi:49786 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:29033 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:49786 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf chebi:29033 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; up:ligand ?ligand59 ; rdf:type up:Binding_Site_Annotation . ?pfsb57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand59 rdfs:subClassOf chebi:49786 . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; rdf:type up:Initiator_Methionine_Annotation ; rdfs:comment 'Removed' . ?pfsb64 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . _:847328 a rdf:Statement ; up:attribution _:847297 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:847329 a rdf:Statement ; up:attribution _:847298 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:847330 a rdf:Statement ; up:attribution _:847299 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:539 . _:847331 a rdf:Statement ; up:attribution _:847300 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:847332 a rdf:Statement ; up:attribution _:847301 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005634 . _:847333 a rdf:Statement ; up:attribution _:847302 ; rdf:subject ?case1 ; rdf:predicate up:recommendedName ; rdf:object ?name2 . _:847334 a rdf:Statement ; up:attribution _:847303 ; rdf:subject ?case1 ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:847335 a rdf:Statement ; up:attribution _:847304 ; rdf:subject ?case1 ; rdf:predicate up:alternativeName ; rdf:object ?name4 . _:847336 a rdf:Statement ; up:attribution _:847305 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:847337 a rdf:Statement ; up:attribution _:847306 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:223 . _:847338 a rdf:Statement ; up:attribution _:847307 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:486 . _:847339 a rdf:Statement ; up:attribution _:847308 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:847340 a rdf:Statement ; up:attribution _:847309 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:847341 a rdf:Statement ; up:attribution _:847310 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:847342 a rdf:Statement ; up:attribution _:847311 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object keyword:533 . _:847343 a rdf:Statement ; up:attribution _:847312 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005506 . _:847344 a rdf:Statement ; up:attribution _:847313 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0016151 . _:847345 a rdf:Statement ; up:attribution _:847314 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0010308 . _:847346 a rdf:Statement ; up:attribution _:847315 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0010309 . _:847347 a rdf:Statement ; up:attribution _:847316 ; rdf:subject ?case1 ; rdf:predicate up:classifiedWith ; rdf:object GO:0019509 . _:847348 a rdf:Statement ; up:attribution _:847317 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:847349 a rdf:Statement ; up:attribution _:847318 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:847350 a rdf:Statement ; up:source unirule:MF_03154 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:847351 a rdf:Statement ; up:attribution _:847319 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:847352 a rdf:Statement ; up:source unirule:MF_03154 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:847353 a rdf:Statement ; up:attribution _:847320 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:847354 a rdf:Statement ; up:source unirule:MF_03154 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:847355 a rdf:Statement ; up:attribution _:847321 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:847356 a rdf:Statement ; up:source unirule:MF_03154 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:847357 a rdf:Statement ; up:attribution _:847322 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:847358 a rdf:Statement ; up:source unirule:MF_03154 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:847359 a rdf:Statement ; up:attribution _:847323 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:847360 a rdf:Statement ; up:source unirule:MF_03154 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:847361 a rdf:Statement ; up:attribution _:847324 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:847362 a rdf:Statement ; up:source unirule:MF_03154 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:847363 a rdf:Statement ; up:attribution _:847325 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:847364 a rdf:Statement ; up:source unirule:MF_03154 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:847365 a rdf:Statement ; up:attribution _:847326 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:847366 a rdf:Statement ; up:source unirule:MF_03154 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:847367 a rdf:Statement ; up:attribution _:847327 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_03154 #Rule MF_03154 Created by:? on:2012-12-07 Modified by:Edouard de Castro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_03154 . ?thisOrganism rdfs:subClassOf+ taxon:2759 . BIND(URI(CONCAT(STR(?this), '#MF_03154a0')) AS ?annotation0) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionQ0367773 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0367775 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ03677MF_0315468 . ?templateMotifSequenceMatchRegionQ0367773 faldo:begin ?templateMotifSequenceMatchBeginQ0367774 . ?templateMotifSequenceMatchBeginQ0367774 faldo:position ?templateMotifSequenceMatchBeginPositionQ0367769 ; faldo:reference isoform:Q03677-1 . ?templateMotifSequenceProfileAlignmentOperationQ0367775 edam:has_input signature:MF_03154 ; rdf:type edam:operation_0300 . ?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0315479 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ03677MF_0315470 . ?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0315478 . ?targetMotifMatchRegionMatchBeginMF_0315478 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0315471 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0315479 edam:has_input signature:MF_03154 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03677MF_0315468, 1, (STRLEN(?templateMotifCigarQ03677MF_0315468) - STRLEN(REPLACE(?templateMotifCigarQ03677MF_0315468, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionQ0367769) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) . BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0315471) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03677MF_0315468, 1, (STRLEN(?templateMotifCigarQ03677MF_0315468) - STRLEN(REPLACE(?templateMotifCigarQ03677MF_0315468, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionQ0367769) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) . BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0315471) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t85) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03677MF_0315468, 1, (STRLEN(?templateMotifCigarQ03677MF_0315468) - STRLEN(REPLACE(?templateMotifCigarQ03677MF_0315468, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionQ0367769) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) . BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0315471) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs1t88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03677MF_0315468, 1, (STRLEN(?templateMotifCigarQ03677MF_0315468) - STRLEN(REPLACE(?templateMotifCigarQ03677MF_0315468, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionQ0367769) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) . BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0315471) - 1) AS ?thisPositionOn36) . BIND(?thisPositionOn36 AS ?thisPositionOn37) . BIND(?this AS ?pfs1t91) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03677MF_0315468, 1, (STRLEN(?templateMotifCigarQ03677MF_0315468) - STRLEN(REPLACE(?templateMotifCigarQ03677MF_0315468, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionQ0367769) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) . BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0315471) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t94) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'E')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03677MF_0315468, 1, (STRLEN(?templateMotifCigarQ03677MF_0315468) - STRLEN(REPLACE(?templateMotifCigarQ03677MF_0315468, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionQ0367769) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) . BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0315471) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs1t97) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'E')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03677MF_0315468, 1, (STRLEN(?templateMotifCigarQ03677MF_0315468) - STRLEN(REPLACE(?templateMotifCigarQ03677MF_0315468, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionQ0367769) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) . BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0315471) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs1t100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03677MF_0315468, 1, (STRLEN(?templateMotifCigarQ03677MF_0315468) - STRLEN(REPLACE(?templateMotifCigarQ03677MF_0315468, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionQ0367769) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03677MF_0315470, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_0315470) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_0315470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) . BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0315471) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs1t103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'H')) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionQ03677109 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ03677111 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ03677MF_03154104 . ?templateMotifSequenceMatchRegionQ03677109 faldo:begin ?templateMotifSequenceMatchBeginQ03677110 . ?templateMotifSequenceMatchBeginQ03677110 faldo:position ?templateMotifSequenceMatchBeginPositionQ03677105 ; faldo:reference isoform:Q03677-1 . ?templateMotifSequenceProfileAlignmentOperationQ03677111 edam:has_input signature:MF_03154 ; rdf:type edam:operation_0300 . ?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03154115 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ03677MF_03154106 . ?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03154114 . ?targetMotifMatchRegionMatchBeginMF_03154114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03154107 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_03154115 edam:has_input signature:MF_03154 ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ03677MF_03154104, 1, (STRLEN(?templateMotifCigarQ03677MF_03154104) - STRLEN(REPLACE(?templateMotifCigarQ03677MF_03154104, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionQ03677105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ03677MF_03154106, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_03154106) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_03154106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ03677MF_03154106, 1, (STRLEN(?targetMotifMatchCigarQ03677MF_03154106) - STRLEN(REPLACE(?targetMotifMatchCigarQ03677MF_03154106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_03154107) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs2t118) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'M')) . BIND(URI(CONCAT(STR(?this), '#MF_03154a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag119) . BIND(URI(CONCAT(STR(?this), '#MF_03154a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_03154a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_03154a4')) AS ?name4) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag119, ?UNBOUND_VARIABLE) AS ?case1) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag120) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag120, ?UNBOUND_VARIABLE) AS ?case5) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:7742 . })) . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:40674 . BIND(?this AS ?caseWithTag121) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag121, ?UNBOUND_VARIABLE) AS ?case9) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:40674 . })) . BIND(?this AS ?caseWithTag122) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag122, ?UNBOUND_VARIABLE) AS ?case10) . OPTIONAL { ?this a up:Protein . VALUES ?supertaxon123 {taxon:4751 taxon:33083} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon123 . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:7742 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:40674 . })) . BIND(?this AS ?case12) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_03154http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_03154#construct
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